Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  17  of  402  ( 48166 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3978177--3978215
18
2.1
19
90
4
62
38
2
0
58
1.12
3978166--3978213
22
2.2
22
81
3
53
33
4
2
60
1.27
3981297--3981335
17
2.2
18
86
4
53
48
0
2
48
1.15
3982985--3983057
31
2.4
31
88
0
101
39
13
9
36
1.78
3985116--3985167
13
4.2
13
78
9
63
53
1
0
44
1.11
3985141--3985190
17
2.9
16
80
19
57
58
0
0
42
0.98
3985116--3985193
23
3.3
22
75
15
59
57
1
0
41
1.07
3985686--3985866
92
2.0
92
90
2
283
40
29
11
18
1.85
3993008--3993129
64
1.9
65
86
8
178
32
19
14
32
1.92
3994625--3994657
10
3.4
10
95
4
59
27
0
27
45
1.54
3995834--3995867
16
2.1
16
89
10
52
17
5
23
52
1.66
3997672--3997844
63
2.7
63
83
1
213
30
10
20
38
1.87
4001963--4001994
2
16.0
2
100
0
64
50
0
0
50
1.00
4002948--4002984
2
18.5
2
100
0
74
48
0
51
0
1.00
4004764--4004791
2
14.0
2
100
0
56
50
0
50
0
1.00
4005311--4005347
19
2.0
18
89
5
56
32
2
0
64
1.07
4007377--4007413
3
12.7
3
88
5
58
29
2
0
67
1.04
4008052--4008118
14
4.4
14
70
23
55
28
1
0
70
0.96
4008045--4008118
24
3.1
24
79
12
82
28
1
0
70
0.96
4008048--4008144
28
3.3
30
70
15
85
31
2
0
65
1.04
4008114--4008182
3
21.7
3
81
16
77
34
2
0
62
1.10
4008478--4008504
11
2.5
11
100
0
54
37
0
7
55
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4008899--4008959
3
20.0
3
88
6
88
31
3
0
65
1.09
4008991--4009177
75
2.5
76
81
5
222
50
6
9
33
1.61
4013367--4013427
16
3.6
18
77
18
69
80
0
16
3
0.84
4013356--4013427
34
2.2
31
88
9
108
79
1
15
4
0.96
4014480--4014531
20
2.6
20
96
0
95
34
17
17
30
1.93
4014626--4014706
21
3.7
21
75
12
72
40
9
12
37
1.76
4014620--4014710
46
2.0
46
91
0
146
40
9
12
37
1.76
4014790--4014983
92
2.1
92
87
2
273
35
13
14
36
1.85
4014795--4014958
48
3.5
48
70
9
149
37
14
13
34
1.85
4015320--4015695
42
8.9
42
77
10
248
21
13
20
45
1.85
4015344--4015520
86
2.1
85
87
3
257
22
14
19
43
1.87
4015321--4015711
41
9.3
39
77
11
203
20
13
19
46
1.84
4015966--4016023
16
3.1
18
79
20
57
20
5
1
72
1.13
4018225--4018390
61
2.8
61
84
5
196
47
7
9
35
1.64
4018145--4018496
192
1.8
193
86
4
514
46
6
11
34
1.66
4018373--4018405
15
2.3
15
89
5
50
63
9
0
27
1.24
4018312--4018457
72
2.0
75
86
6
210
47
6
10
35
1.62
4020034--4020075
13
3.0
14
79
10
50
73
4
0
21
1.01
4020035--4020077
22
2.0
22
86
9
61
76
4
0
18
0.95
4021796--4021839
19
2.3
19
84
7
54
36
2
0
61
1.09
4021810--4021839
10
3.1
10
95
4
53
36
0
0
63
0.95
4043554--4043864
171
1.8
172
85
2
446
25
16
16
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4051798--4051858
28
2.3
26
80
8
70
40
21
19
18
1.91
4053879--4053938
23
2.6
24
75
15
63
48
20
3
28
1.65
4054235--4054271
19
1.9
19
89
10
58
59
18
0
21
1.38
4054567--4054604
20
1.9
20
89
10
60
63
2
5
28
1.30
4066799--4066889
14
6.3
14
73
15
78
49
27
0
23
1.50
4066836--4066937
30
3.4
29
76
11
100
46
32
0
21
1.52
4066799--4066889
44
2.1
43
86
10
123
49
27
0
23
1.50
4066803--4066985
29
6.2
29
77
7
113
48
31
0
19
1.53
4071031--4071103
34
2.1
34
94
0
128
31
10
23
34
1.89
4085639--4085676
16
2.4
16
90
0
58
44
21
0
34
1.52
4094936--4095035
12
8.3
12
74
16
59
37
2
0
61
1.08
4094971--4095014
14
3.3
14
87
6
56
36
0
0
63
0.95
4094969--4095021
27
2.0
26
85
3
70
39
0
0
60
0.97
4094925--4095000
25
3.2
25
73
23
76
31
1
0
67
0.99
4094928--4095003
35
2.2
32
80
15
89
32
1
0
65
1.01
4096405--4097242
412
2.0
413
96
0
1552
48
10
6
34
1.64
4103481--4103533
26
2.2
23
83
10
61
28
15
9
47
1.76
4107283--4107325
22
2.0
22
90
0
68
34
11
9
44
1.73
4109288--4109335
20
2.3
20
89
7
69
66
0
0
33
0.92
4109288--4109335
22
2.1
22
85
11
62
66
0
0
33
0.92
4110902--4110959
27
2.1
27
90
0
89
27
5
15
51
1.64
4122211--4122390
14
12.2
15
65
14
63
22
0
27
50
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4123985--4124018
15
2.3
15
94
0
59
44
0
0
55
0.99
4124541--4124577
19
1.9
19
94
0
65
62
0
2
35
1.10
4141626--4141659
16
2.1
17
88
5
52
29
0
0
70
0.87
4148310--4148625
55
5.6
56
76
11
247
50
4
8
36
1.53
4151641--4151700
26
2.3
27
82
5
86
36
0
3
60
1.14
4158485--4158634
57
2.7
57
81
8
148
52
2
11
34
1.52
4158540--4158758
57
3.8
58
74
12
191
51
3
9
35
1.51
4158699--4158732
12
2.6
13
90
9
52
67
0
2
29
1.05
4158719--4158809
47
1.9
47
82
6
112
51
3
4
40
1.38
4164067--4164128
31
2.1
29
91
8
99
62
0
0
37
0.95
4173762--4173800
18
2.0
20
85
9
55
17
5
5
71
1.23
4173745--4173796
23
2.1
25
86
10
72
15
5
5
73
1.22
4174504--4174555
2
25.5
2
88
3
77
50
1
48
0
1.12
4186190--4186242
21
2.5
21
87
0
70
47
3
9
39
1.54
4189052--4189100
23
2.1
23
81
7
55
63
2
6
28
1.30
4189062--4189120
23
2.6
23
82
15
77
59
1
3
35
1.24
4189068--4189138
22
3.0
24
81
8
74
57
4
4
33
1.37
4189342--4189375
17
2.0
17
88
0
50
41
14
20
23
1.89
4189691--4189980
149
1.9
150
86
3
415
40
14
10
33
1.81
4196289--4196322
16
2.1
16
88
0
50
58
2
2
35
1.28
4197993--4198020
2
14.0
2
100
0
56
50
0
0
50
1.00
4198388--4198412
2
12.5
2
100
0
50
52
0
48
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4199937--4199973
5
7.6
5
90
6
58
56
0
2
40
1.13
4205185--4205220
18
2.0
18
94
0
63
44
0
2
52
1.15
4205231--4205282
16
3.1
17
78
13
54
44
1
0
53
1.11
4206406--4206469
12
5.1
13
76
17
64
32
0
0
67
0.91
4206416--4206467
20
2.6
20
84
6
61
30
0
0
69
0.89
4206478--4206532
28
2.0
26
86
6
74
43
7
5
43
1.55
4209751--4209817
2
33.5
2
73
5
55
43
4
7
44
1.52
4213490--4213523
4
8.5
4
100
0
68
76
0
0
23
0.79
4216472--4216499
2
14.0
2
100
0
56
50
0
0
50
1.00
4217333--4217382
2
25.0
2
100
0
100
50
0
50
0
1.00
4218920--4218957
19
2.0
19
90
10
60
78
7
13
0
0.94
4220423--4220460
20
1.9
20
88
0
58
71
2
0
26
1.00
4221668--4221724
23
2.5
23
83
8
64
19
1
3
75
1.04
4221667--4221731
10
6.4
10
73
15
53
18
3
3
75
1.07
4227363--4227475
21
5.2
21
81
6
136
38
3
12
45
1.59
4227363--4227494
42
3.0
44
82
8
162
43
3
11
42
1.56
4227616--4227721
44
2.4
45
82
6
126
38
9
16
35
1.81
4227704--4227741
20
1.9
20
94
0
67
42
7
21
28
1.81
4227980--4228013
16
2.1
16
88
0
50
20
8
26
44
1.81
4227943--4228087
73
2.0
73
82
2
175
32
13
17
37
1.88
4228061--4228108
16
3.0
16
81
0
60
29
14
16
39
1.88
4227984--4228176
89
2.2
90
86
1
264
32
13
17
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4228199--4228250
27
1.9
27
88
0
77
36
11
13
38
1.81
4228226--4228262
17
2.2
17
90
0
56
35
13
13
37
1.84
4234929--4234965
19
1.9
19
100
0
74
32
0
0
67
0.91
4235372--4235436
32
2.0
32
85
5
87
73
4
1
20
1.08
4236521--4236593
32
2.3
32
84
9
96
31
10
19
38
1.86
4236524--4236604
32
2.6
32
78
9
87
33
12
17
37
1.87
4236769--4236829
21
2.9
21
75
0
68
42
16
6
34
1.74
4237150--4237211
24
2.8
21
85
11
72
41
12
4
40
1.65
4237150--4237250
45
2.2
45
84
3
123
42
14
3
38
1.65
4238471--4238506
14
2.3
17
86
13
51
16
19
0
63
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402