genome.fa.s1.2.7.7.80.10.50.1000.393.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  393  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35570450--35570502	26	2.0	26	92	0	88	28	28	18	24	1.98
35570925--35570977	26	2.0	26	89	7	81	24	24	22	28	2.00
35570775--35571136	184	2.0	184	85	2	485	20	25	28	24	1.99
35572707--35572756	26	1.9	26	87	0	73	26	26	18	30	1.98
35572733--35573231	158	3.2	157	75	6	470	20	26	30	23	1.98
35573205--35573257	26	2.0	26	89	7	81	30	22	16	30	1.96
35573895--35573947	26	2.0	26	92	0	88	26	30	20	22	1.98
35573921--35574748	159	5.2	158	74	7	591	19	25	30	25	1.98
35573924--35574493	316	1.8	316	82	6	744	18	25	31	24	1.98
35574722--35574774	26	2.0	26	92	0	88	26	26	20	26	1.99
35575608--35576130	159	3.3	159	76	7	380	20	26	28	24	1.99
35576815--35576867	26	2.0	26	92	7	90	26	24	20	28	1.99
35576234--35577571	729	1.8	730	87	2	2013	27	22	21	27	1.99
35578060--35578109	26	1.9	26	95	0	91	28	28	18	26	1.98
35578511--35578561	26	2.0	26	84	7	68	29	21	19	29	1.98
35579512--35579563	25	2.0	26	96	3	97	26	26	21	25	1.99
35581125--35581177	26	2.0	26	88	0	79	28	26	18	26	1.98
35581151--35581652	159	3.2	159	78	4	550	18	27	31	21	1.97
35583112--35583164	26	2.0	26	85	7	72	30	24	16	28	1.97
35583475--35583529	26	2.1	26	82	3	65	23	25	18	32	1.97
35583709--35584010	158	1.9	158	83	5	396	21	26	27	24	1.99
35583782--35584163	157	2.4	157	83	3	457	20	25	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35584893--35584964	26	2.8	26	84	0	99	25	25	22	27	2.00
35586167--35586651	158	3.1	157	77	5	483	19	27	30	22	1.98
35586538--35587370	354	2.3	355	80	7	933	19	27	30	22	1.98
35587027--35587531	159	3.2	158	78	5	482	18	27	30	23	1.97
35587503--35587555	26	2.0	26	89	7	81	26	26	18	28	1.98
35588333--35588385	26	2.0	26	89	7	81	28	24	16	30	1.97
35588530--35588582	26	2.0	26	89	7	81	28	24	18	28	1.98
35589604--35589656	26	2.0	26	88	0	79	32	26	15	26	1.95
35589478--35589816	185	1.8	185	85	2	475	20	27	29	22	1.98
35589186--35591657	344	7.3	342	76	9	1781	19	27	29	23	1.98
35589948--35589999	25	2.0	26	96	3	97	30	26	17	25	1.97
35590046--35590963	159	5.6	158	72	10	632	18	27	31	23	1.97
35590447--35590499	26	2.0	26	96	0	97	30	28	16	24	1.97
35591287--35591339	26	2.0	26	85	7	72	32	28	15	24	1.95
35591385--35591969	158	3.7	157	80	4	565	16	30	30	23	1.96
35592670--35592722	26	2.0	26	86	13	74	30	26	16	26	1.97
35593826--35593878	26	2.0	26	85	7	72	26	20	20	32	1.98
35594207--35594258	26	2.0	26	88	0	77	32	26	11	28	1.91
35593812--35594843	380	2.7	380	82	2	1088	22	26	27	23	1.99
35594587--35594639	26	2.0	26	89	7	81	30	24	16	28	1.97
35595512--35595887	158	2.4	157	75	10	377	20	25	30	23	1.99
35596006--35596057	25	2.0	26	92	3	88	26	25	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35596203--35596252	26	1.9	26	88	8	75	24	24	24	28	2.00
35596922--35596974	26	2.0	26	88	0	79	30	28	16	24	1.97
35597423--35597475	26	2.0	26	85	7	72	28	22	18	30	1.98
35597387--35597841	195	2.3	196	90	1	707	21	27	28	22	1.99
35598498--35598550	26	2.0	26	92	0	88	28	22	20	28	1.99
35599221--35599274	26	2.0	28	89	7	85	31	29	16	22	1.96
35600106--35600158	26	2.0	26	92	0	88	26	26	20	26	1.99
35600129--35600635	159	3.2	158	81	3	608	20	26	29	23	1.99
35600609--35600667	26	2.3	26	100	0	118	23	18	23	33	1.97
35602030--35602082	26	2.0	26	85	7	72	28	22	20	28	1.99
35601600--35602279	355	1.9	355	83	6	875	18	26	30	23	1.98
35602089--35602377	159	1.8	158	81	2	355	15	28	32	22	1.95
35602532--35602584	26	2.0	26	89	7	81	26	20	20	32	1.98
35603239--35603971	342	2.1	342	83	2	889	21	27	27	24	1.99
35604109--35604158	26	1.9	26	84	8	66	26	22	20	32	1.98
35605353--35605405	26	2.0	26	88	0	79	32	26	16	24	1.97
35605202--35605564	184	2.0	184	86	1	512	20	26	29	23	1.99
35605412--35605845	157	2.7	158	81	4	482	17	28	32	22	1.96
35606010--35606062	26	2.0	26	92	7	90	26	20	20	32	1.98
35606294--35606346	26	2.0	26	85	0	70	28	24	20	26	1.99
35606964--35607465	158	3.2	158	75	7	410	18	25	31	23	1.98
35607439--35607491	26	2.0	26	92	7	90	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35606882--35607843	500	1.9	500	80	4	1098	19	25	30	24	1.98
35608116--35608168	26	2.0	26	86	13	74	30	26	16	26	1.97
35609159--35609214	26	2.2	26	90	0	85	30	25	17	26	1.97
35609664--35609733	26	2.7	26	97	0	131	24	24	21	30	1.99
35611518--35611581	21	3.0	21	97	0	119	28	21	43	6	1.77
35611787--35611839	26	2.0	26	89	7	81	28	28	18	24	1.98
35612627--35612680	26	2.1	26	93	6	92	25	25	20	27	1.99
35612982--35613034	26	2.0	26	89	7	81	26	22	20	30	1.98
35613435--35613487	26	2.0	26	92	0	88	28	28	18	24	1.98
35613492--35613523	15	2.1	16	94	5	57	31	28	34	6	1.82
35613780--35613832	26	2.0	26	85	0	70	30	26	16	26	1.97
35614998--35615050	26	2.0	26	92	0	88	26	28	20	24	1.99
35615816--35616158	158	2.2	157	82	5	388	23	28	27	20	1.99
35616132--35616184	26	2.0	26	92	0	88	24	18	28	28	1.98
35617726--35617778	26	2.0	26	89	7	81	28	18	24	28	1.98
35617325--35618045	356	2.0	364	79	4	789	22	26	28	22	1.99
35619068--35619120	26	2.0	26	92	7	90	30	20	22	26	1.98
35624917--35624969	26	2.0	26	85	0	70	26	15	28	30	1.96
35625650--35625702	26	2.0	26	92	7	90	28	20	24	26	1.99
35627192--35627244	26	2.0	26	85	7	72	30	15	22	32	1.94
35626950--35627925	486	2.0	490	82	3	1178	23	29	26	20	1.99
35627864--35628156	159	1.8	159	82	2	374	25	31	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35628204--35628254	26	2.0	26	92	0	84	25	13	27	33	1.94
35627433--35628808	527	2.6	525	83	3	1627	23	28	26	20	1.99
35628391--35628697	159	1.9	158	86	0	434	23	30	26	19	1.98
35629457--35629507	26	2.0	25	88	3	75	31	17	21	29	1.96
35629480--35629925	157	2.8	157	76	4	412	24	30	26	18	1.98
35629955--35630007	26	2.0	26	89	7	81	26	18	26	28	1.98
35630608--35630660	26	2.0	26	92	0	88	28	18	24	28	1.98
35631109--35631161	26	2.0	26	88	0	79	24	16	28	30	1.97
35631466--35631517	26	2.0	26	85	7	70	30	17	23	28	1.97
35632662--35632713	26	2.0	26	92	7	88	28	19	25	26	1.98
35632687--35633186	158	3.2	157	76	6	492	21	28	28	21	1.99
35633273--35634014	158	4.7	155	75	7	636	22	29	26	21	1.99
35633273--35634014	315	2.3	315	85	2	979	22	29	26	21	1.99
35633988--35634040	26	2.0	26	92	7	90	26	20	26	26	1.99
35634711--35634763	26	2.0	26	89	7	81	24	18	28	28	1.98
35634743--35635100	158	2.3	158	77	8	352	24	31	25	18	1.98
35635212--35635264	26	2.0	26	96	0	97	24	20	28	26	1.99
35636783--35636835	26	2.0	26	92	7	90	32	18	22	26	1.97
35636808--35637273	159	2.9	157	78	6	444	25	30	25	18	1.98
35637283--35637338	26	2.2	26	90	0	85	25	17	25	32	1.97
35638299--35638351	26	2.0	26	92	0	88	24	18	28	28	1.98
35638495--35638550	26	2.2	26	93	0	94	35	17	23	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35638267--35638644	196	1.9	196	83	3	483	24	27	26	21	1.99
35638523--35638958	159	2.8	158	75	2	444	23	30	27	19	1.98
35638523--35639014	158	3.1	156	75	3	480	22	30	26	20	1.98
35638996--35639048	26	2.0	26	85	0	70	26	16	26	30	1.97
35637961--35639761	697	2.6	677	79	6	1943	23	28	27	20	1.99
35639680--35639732	26	2.0	26	92	0	88	24	18	28	28	1.98
35641450--35641496	24	2.0	24	87	8	69	25	21	29	23	1.99
35641835--35642336	159	3.2	158	78	4	517	23	29	27	19	1.98
35642310--35642362	26	2.0	26	85	0	70	28	18	26	26	1.98
35652246--35652298	26	2.0	26	88	0	79	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402