genome.fa.s1.2.7.7.80.10.50.1000.392.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  392  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493440--35493492	26	2.0	26	85	7	72	28	22	18	30	1.98
35494174--35494226	26	2.0	26	88	0	79	28	26	20	24	1.99
35495345--35495397	26	2.0	26	92	7	90	26	20	20	32	1.98
35495629--35495681	26	2.0	26	85	0	70	28	24	20	26	1.99
35496618--35496669	26	2.0	26	84	0	68	23	23	21	32	1.98
35496998--35497048	26	2.0	26	92	0	84	31	27	11	29	1.92
35497365--35497417	26	2.0	26	85	7	72	30	26	18	24	1.98
35496776--35497609	368	2.3	369	79	3	883	20	26	29	24	1.99
35497866--35497918	26	2.0	26	89	7	81	26	24	22	26	2.00
35498801--35499105	158	1.9	158	81	3	371	19	24	31	24	1.98
35498921--35499413	183	2.7	183	78	5	472	20	25	29	24	1.99
35499764--35499815	26	2.0	26	92	7	88	26	25	19	28	1.98
35500633--35501013	158	2.4	159	75	5	378	18	27	30	23	1.98
35500986--35501038	26	2.0	26	89	7	81	30	24	16	28	1.97
35501688--35502085	159	2.5	160	74	4	385	22	25	28	23	1.99
35502061--35502104	20	2.1	21	87	4	63	29	13	43	13	1.83
35503206--35503287	26	3.2	26	94	3	139	26	23	20	29	1.99
35503983--35504355	159	2.4	157	83	3	444	18	27	31	22	1.97
35504483--35504535	26	2.0	26	88	0	79	28	26	18	26	1.98
35505052--35505095	21	2.1	21	95	0	79	27	20	45	6	1.76
35505301--35505353	26	2.0	26	89	7	81	30	28	16	24	1.97
35505377--35505724	171	2.0	169	82	2	428	22	25	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35505807--35506236	159	2.7	159	78	5	359	20	26	27	25	1.99
35506210--35506263	26	2.1	26	89	6	83	25	24	20	29	1.99
35506565--35506617	26	2.0	26	85	7	72	26	20	20	32	1.98
35507018--35507070	26	2.0	26	96	0	97	26	28	20	24	1.99
35507075--35507106	15	2.1	16	94	5	57	31	28	34	6	1.82
35507298--35507325	13	2.2	13	100	0	56	7	46	25	21	1.76
35507362--35507414	26	2.0	26	88	0	79	28	26	18	26	1.98
35507857--35507909	26	2.0	26	89	7	81	28	22	20	28	1.99
35508576--35508628	26	2.0	26	92	0	88	26	28	20	24	1.99
35509358--35509410	26	2.0	26	92	7	90	28	20	24	26	1.99
35509860--35509912	26	2.0	26	92	0	88	24	15	28	32	1.95
35510227--35510279	26	2.0	26	92	0	88	26	18	28	26	1.98
35511453--35511505	26	2.0	27	88	3	81	28	18	28	24	1.98
35512481--35512853	157	2.4	157	79	3	392	24	29	25	19	1.98
35513311--35513361	26	2.0	26	96	0	93	29	15	25	29	1.96
35514191--35514533	158	2.2	158	80	4	377	24	30	25	19	1.98
35514507--35514559	26	2.0	26	88	0	79	26	18	26	28	1.98
35514876--35514926	26	2.0	26	84	0	66	25	15	31	27	1.96
35515231--35515283	26	2.0	26	88	0	79	26	18	26	28	1.98
35514263--35515693	368	4.0	362	79	5	1443	22	29	27	20	1.99
35515599--35515651	26	2.0	26	88	0	79	26	18	26	28	1.98
35516676--35516728	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35517397--35517446	26	1.9	26	91	0	82	36	22	20	22	1.96
35517434--35517923	159	3.1	158	73	4	459	24	28	26	20	1.99
35517897--35517949	26	2.0	26	88	0	79	28	20	24	26	1.99
35518266--35518318	26	2.0	26	89	7	81	28	18	24	28	1.98
35518609--35518661	26	2.0	26	88	0	79	22	18	30	28	1.98
35519674--35519726	26	2.0	26	92	7	90	28	20	24	26	1.99
35525610--35525662	26	2.0	26	92	0	88	24	18	28	28	1.98
35526340--35526392	26	2.0	26	92	7	90	28	20	24	26	1.99
35527777--35527829	26	2.0	26	85	7	72	30	15	22	32	1.94
35528433--35528729	159	1.9	159	83	1	389	23	30	27	18	1.97
35528788--35528838	26	2.0	26	88	0	75	25	15	27	31	1.96
35528018--35529555	527	2.9	518	82	5	1725	23	29	26	20	1.99
35528966--35529303	159	2.1	157	82	3	401	22	30	26	21	1.99
35529316--35529368	26	2.0	26	92	0	88	24	18	28	28	1.98
35529665--35529717	26	2.0	26	92	0	88	24	18	28	28	1.98
35530414--35531155	159	4.7	159	75	4	604	24	28	27	20	1.99
35530426--35531233	158	5.1	156	74	6	570	24	28	26	20	1.99
35530414--35531233	317	2.6	314	81	3	928	24	28	26	20	1.99
35531207--35531259	26	2.0	26	92	0	88	26	18	28	26	1.98
35531393--35531826	159	2.7	157	77	4	442	23	29	27	18	1.98
35533349--35533401	26	2.0	26	88	0	79	24	16	28	30	1.97
35534071--35534123	26	2.0	26	85	7	72	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35534096--35534526	159	2.7	157	76	6	395	25	30	26	17	1.97
35534571--35534623	26	2.0	26	92	7	90	26	20	26	26	1.99
35535223--35535275	26	2.0	26	92	0	88	28	18	24	28	1.98
35535724--35535776	26	2.0	26	88	0	79	24	16	28	30	1.97
35535920--35536289	184	2.0	184	83	1	472	24	26	26	22	2.00
35537303--35537354	26	2.0	26	92	7	88	28	19	25	26	1.98
35538090--35538649	158	3.6	157	72	9	431	22	30	25	20	1.98
35538634--35538681	25	1.9	25	91	8	80	25	20	29	25	1.99
35539353--35539405	26	2.0	26	92	7	90	24	16	28	30	1.97
35539388--35539879	159	3.1	155	76	8	444	23	31	26	18	1.98
35539853--35539905	26	2.0	26	96	0	97	24	20	28	26	1.99
35541425--35541477	26	2.0	26	92	7	90	30	18	24	26	1.98
35541450--35541951	159	3.2	158	78	7	502	23	30	26	19	1.98
35541925--35541977	26	2.0	26	92	0	88	24	20	26	28	1.99
35542936--35542988	26	2.0	26	92	0	88	24	18	28	28	1.98
35543133--35543186	26	2.1	26	89	0	81	33	18	24	24	1.97
35542916--35543290	195	1.9	195	85	2	520	22	26	29	21	1.99
35543159--35543605	159	2.8	157	77	5	414	21	30	27	19	1.98
35543631--35543683	26	2.0	26	85	0	70	26	16	26	30	1.97
35542623--35544394	695	2.6	678	82	5	1981	22	28	27	20	1.99
35543809--35544339	157	3.4	156	72	6	455	22	29	27	19	1.98
35544313--35544365	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35545045--35545096	26	2.0	26	88	7	79	30	19	23	26	1.98
35545385--35545437	26	2.0	26	88	0	79	24	18	26	30	1.98
35545580--35545632	26	2.0	26	92	7	90	28	20	24	26	1.99
35546787--35546839	26	2.0	26	92	0	88	24	18	28	28	1.98
35546820--35547179	170	2.1	171	80	4	397	21	31	27	18	1.97
35547153--35547205	26	2.0	26	89	7	81	30	20	22	26	1.98
35547179--35547579	157	2.5	159	83	4	515	23	30	28	17	1.97
35547186--35547680	159	3.1	154	80	5	526	22	30	27	18	1.98
35547654--35547706	26	2.0	26	85	0	70	28	18	26	26	1.98
35553176--35553228	26	2.0	26	92	7	90	28	20	24	26	1.99
35553867--35554369	159	3.2	158	76	4	501	23	30	26	19	1.98
35554343--35554395	26	2.0	26	96	0	97	24	20	28	26	1.99
35554184--35554738	184	3.0	183	81	4	641	24	29	26	19	1.98
35555808--35555860	26	2.0	26	92	0	88	24	18	28	28	1.98
35556005--35556506	158	3.2	157	81	3	524	22	30	27	19	1.98
35556480--35556532	26	2.0	26	96	0	97	24	20	28	26	1.99
35556848--35556901	26	2.1	26	85	0	72	24	22	25	27	2.00
35562811--35562862	26	2.0	25	88	3	77	26	23	21	28	1.99
35563468--35564286	158	5.2	159	73	9	521	19	27	30	22	1.98
35564430--35564482	26	2.0	26	92	0	88	28	28	18	24	1.98
35564575--35565113	158	3.4	158	79	6	601	17	27	31	23	1.97
35563854--35565486	668	2.4	660	80	8	1694	19	27	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35565455--35565504	26	1.9	26	92	8	84	26	24	20	30	1.98
35566174--35566226	26	2.0	26	92	0	88	28	28	18	24	1.98
35566200--35566634	159	2.7	158	84	5	574	18	28	31	20	1.97
35566689--35566741	26	2.0	26	85	0	70	26	28	18	26	1.98
35567188--35567240	26	2.0	26	85	7	72	26	24	18	30	1.98
35567310--35567350	11	3.7	11	80	0	55	29	36	21	12	1.90
35567310--35567353	22	2.0	22	90	0	70	29	34	25	11	1.91
35567931--35567984	27	2.0	26	86	10	74	27	27	16	27	1.97
35568401--35568454	26	2.1	26	93	6	92	25	24	20	29	1.99
35568781--35568833	26	2.0	26	92	0	88	28	28	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402