genome.fa.s1.2.7.7.80.10.50.1000.369.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  369  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33665756--33665808	26	2.0	26	92	0	88	26	16	26	30	1.97
33666122--33666174	26	2.0	26	89	7	81	28	18	26	26	1.98
33665964--33666507	183	3.0	182	85	3	696	23	28	27	20	1.99
33666330--33666705	158	2.4	158	77	4	389	23	30	27	18	1.98
33666330--33666776	159	2.8	157	76	4	423	22	30	28	18	1.98
33666806--33666858	26	2.0	26	88	0	79	26	18	26	28	1.98
33667511--33667563	26	2.0	26	89	7	81	28	18	24	28	1.98
33668012--33668064	26	2.0	26	96	0	97	24	20	28	26	1.99
33668392--33668701	159	1.9	158	82	5	383	26	30	24	18	1.98
33668392--33668737	159	2.2	157	80	6	367	26	28	24	19	1.99
33668711--33668763	26	2.0	26	82	13	65	28	16	26	28	1.97
33669997--33670722	159	4.6	158	77	4	685	23	30	28	18	1.98
33669997--33670722	317	2.3	317	84	2	949	23	30	28	18	1.98
33675582--33675634	26	2.0	26	88	0	79	26	18	24	30	1.98
33676316--33676368	26	2.0	26	82	7	63	32	18	22	26	1.97
33676341--33676705	158	2.3	158	81	5	432	24	30	27	18	1.97
33676341--33676844	159	3.2	159	77	6	459	22	29	27	20	1.98
33676818--33676870	26	2.0	26	88	0	79	26	18	26	28	1.98
33677518--33677569	26	2.0	26	85	3	70	26	19	25	28	1.98
33678262--33679329	342	3.3	317	74	12	814	23	29	27	19	1.98
33678262--33678924	159	4.2	159	80	4	701	22	29	28	19	1.98
33678926--33679296	159	2.4	156	77	8	358	25	29	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33679766--33679817	26	2.0	26	88	7	79	30	19	23	26	1.98
33679606--33679968	184	2.0	184	85	3	498	26	28	25	20	1.99
33680266--33680318	26	2.0	26	88	0	79	28	16	24	30	1.97
33681014--33681516	159	3.2	157	79	5	548	24	30	26	19	1.98
33683938--33683992	26	2.1	27	86	3	76	30	18	27	23	1.97
33684682--33685183	159	3.2	159	76	6	406	24	29	26	19	1.99
33684973--33685629	355	1.8	358	79	4	773	23	28	27	21	1.99
33685526--33685578	26	2.0	26	89	7	81	28	20	24	26	1.99
33687631--33687665	12	2.9	12	95	0	61	0	31	31	37	1.58
33687687--33687739	26	2.0	26	89	7	81	32	18	20	28	1.97
33688188--33688238	26	2.0	26	88	0	75	27	17	25	29	1.98
33688909--33688961	26	2.0	26	89	7	81	28	22	24	24	2.00
33689388--33689448	26	2.4	26	76	10	65	26	14	26	32	1.95
33690618--33690670	26	2.0	26	100	0	106	26	20	26	26	1.99
33690998--33691050	26	2.0	26	85	0	70	32	18	22	26	1.97
33691024--33691524	158	3.2	158	78	4	497	23	29	27	20	1.99
33692010--33692062	26	2.0	26	92	7	90	24	22	26	26	2.00
33690729--33692132	512	2.7	506	80	7	1519	22	29	27	20	1.98
33692643--33692673	11	2.8	11	95	0	53	19	38	29	12	1.89
33692936--33693427	159	3.0	160	74	10	402	23	29	27	18	1.98
33693541--33693593	26	2.0	26	89	7	81	26	18	26	28	1.98
33694041--33694093	26	2.0	26	82	7	63	24	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33694739--33694791	26	2.0	26	92	0	88	24	20	30	24	1.99
33694597--33694949	184	1.9	182	84	1	463	22	29	28	19	1.98
33694377--33695022	341	1.9	341	79	6	734	23	28	27	19	1.99
33695240--33695292	26	2.0	26	89	7	81	26	18	26	28	1.98
33695419--33695471	26	2.0	26	92	7	90	28	20	24	26	1.99
33696226--33696278	26	2.0	26	96	0	97	24	20	28	26	1.99
33696594--33696646	26	2.0	26	96	0	97	24	16	28	30	1.97
33703228--33703621	158	2.5	156	79	5	436	25	29	26	18	1.98
33703688--33703740	26	2.0	26	88	0	79	28	20	24	26	1.99
33704153--33704879	159	4.6	157	74	7	522	22	29	27	20	1.99
33704859--33704910	25	2.0	26	92	3	88	26	21	25	26	1.99
33704543--33705258	341	2.1	341	88	1	1031	23	29	27	19	1.98
33705200--33705252	26	2.0	26	85	0	70	28	22	22	26	1.99
33705959--33706454	158	3.1	157	76	4	440	22	30	28	18	1.98
33706840--33707253	171	2.4	170	82	2	492	24	31	26	18	1.97
33707362--33707412	26	2.0	26	88	0	75	23	17	27	31	1.97
33706251--33707919	923	1.8	930	86	3	2432	24	28	25	21	1.99
33707946--33708000	26	2.1	26	82	0	65	25	16	25	32	1.96
33708673--33708723	26	2.0	26	84	7	68	29	19	21	29	1.98
33709172--33709224	26	2.0	26	85	0	70	28	18	26	26	1.98
33709553--33709625	26	2.8	26	89	4	112	30	19	21	28	1.98
33710088--33710140	26	2.0	26	81	0	61	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33711474--33711526	26	2.0	26	89	7	81	26	22	24	26	2.00
33711817--33711869	26	2.0	26	92	0	88	26	20	26	26	1.99
33712906--33712975	26	2.7	26	93	0	122	28	18	25	27	1.98
33712948--33713392	159	2.8	156	78	4	462	25	30	26	18	1.98
33713424--33713474	26	2.0	26	88	0	75	31	17	23	27	1.97
33713265--33713634	184	2.0	184	81	3	431	24	29	25	20	1.99
33713080--33714029	501	1.9	500	82	1	1195	25	29	24	20	1.99
33714833--33715202	158	2.3	159	79	5	367	23	29	26	20	1.99
33715315--33715367	26	2.0	26	96	0	97	28	20	24	26	1.99
33715406--33715841	159	2.8	155	77	6	437	24	30	25	19	1.98
33714947--33715886	500	1.9	500	84	1	1256	24	29	25	20	1.99
33715815--33715867	26	2.0	26	96	0	97	24	20	28	26	1.99
33714853--33720539	505	11.1	498	70	14	2754	23	29	26	20	1.99
33716001--33716261	138	1.9	138	87	1	380	26	27	27	18	1.98
33716318--33716366	26	1.9	25	91	4	80	28	14	26	30	1.95
33716886--33717386	158	3.2	158	72	9	405	23	29	27	19	1.98
33717360--33717412	26	2.0	26	96	0	97	24	20	28	26	1.99
33717546--33717805	138	1.9	138	86	6	375	25	27	28	18	1.98
33718213--33718263	26	2.0	26	92	0	84	33	17	21	27	1.96
33718891--33718943	26	2.0	26	96	0	97	24	20	28	26	1.99
33719077--33719337	138	1.9	138	87	1	389	25	28	28	18	1.98
33719210--33719870	344	1.9	343	83	4	866	23	29	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33719581--33720148	197	3.0	183	75	10	525	23	29	26	20	1.99
33719979--33720464	158	3.1	158	74	4	485	22	30	27	19	1.98
33721639--33721691	26	2.0	26	92	0	88	24	18	28	28	1.98
33723095--33723145	26	2.0	26	88	7	77	31	13	25	29	1.94
33723121--33723621	158	3.2	158	74	4	452	23	29	26	20	1.99
33724502--33724554	26	2.0	26	92	0	88	22	20	30	26	1.98
33725029--33725081	26	2.0	26	92	0	88	24	18	28	28	1.98
33724498--33725659	527	2.2	525	82	2	1375	24	27	26	20	1.99
33725199--33725518	159	2.0	158	83	4	394	22	30	28	19	1.98
33726289--33726338	26	1.9	26	92	8	84	30	22	24	24	1.99
33726714--33726766	26	2.0	26	92	0	88	28	18	24	28	1.98
33727228--33727280	26	2.0	26	85	0	70	26	16	26	30	1.97
33728297--33728348	26	2.0	26	96	0	95	25	15	28	30	1.96
33727991--33728727	343	2.1	342	82	3	890	24	28	25	20	1.99
33728639--33728691	26	2.0	26	89	7	81	26	22	24	26	2.00
33728842--33729349	158	3.2	157	81	5	540	22	27	28	21	1.99
33730036--33730408	158	2.4	158	78	3	399	24	29	27	18	1.98
33730717--33730974	140	1.8	140	87	0	381	23	30	30	16	1.96
33732460--33733111	317	2.1	317	80	4	726	24	28	25	21	1.99
33732427--33732985	159	3.5	158	74	7	515	24	28	26	20	1.99
33733085--33733140	26	2.2	26	90	0	85	25	19	25	30	1.98
33733255--33733577	159	2.0	158	86	0	448	21	31	29	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33733612--33733664	26	2.0	26	96	0	97	24	20	28	26	1.99
33734830--33734882	26	2.0	26	85	0	70	24	18	28	28	1.98
33735562--33735614	26	2.0	26	89	7	81	30	18	22	28	1.98
33736065--33736115	26	2.0	26	88	0	75	27	19	31	21	1.97
33736247--33736296	26	1.9	26	87	0	73	26	20	28	26	1.99
33737324--33737376	26	2.0	26	96	0	97	24	16	28	30	1.97
33737350--33738066	347	2.1	343	81	4	827	24	29	26	19	1.98
33738040--33738092	26	2.0	26	85	7	72	28	20	24	26	1.99
33737880--33738447	196	3.0	183	75	10	552	25	27	24	22	2.00
33738236--33738288	26	2.0	26	85	7	72	32	18	20	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402