Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  18  of  402  ( 48166 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4238463--4238526
33
1.9
33
84
9
85
14
18
0
67
1.24
4243379--4243424
19
2.4
19
82
13
58
73
8
2
15
1.16
4243379--4243430
20
2.6
19
85
11
61
75
7
1
15
1.12
4256094--4256298
53
3.8
54
76
12
181
23
12
7
56
1.61
4256094--4256298
55
3.8
55
74
13
167
23
12
7
56
1.61
4256127--4256299
52
3.2
53
74
11
174
21
11
6
60
1.53
4256733--4256778
19
2.2
21
81
18
69
34
19
13
32
1.90
4256739--4256779
19
2.2
19
100
0
82
31
19
14
34
1.92
4257593--4257713
45
2.9
41
77
16
129
44
14
14
25
1.84
4257553--4257690
41
3.2
45
79
8
146
45
16
13
23
1.83
4257658--4257910
41
6.1
41
83
6
289
45
17
12
24
1.84
4257664--4257936
82
3.3
82
84
3
345
45
17
13
23
1.83
4257667--4257936
123
2.2
122
83
6
339
45
17
13
23
1.84
4259609--4259712
24
4.3
23
72
13
75
6
19
0
74
1.04
4259603--4259703
17
5.9
16
79
17
98
6
17
0
75
1.02
4259617--4259715
9
11.6
9
72
24
72
6
18
0
75
1.00
4259617--4259715
25
3.9
27
74
20
97
6
18
0
75
1.00
4264085--4264139
24
2.2
24
81
9
58
49
3
7
40
1.48
4264266--4264325
26
2.3
26
85
5
77
45
6
1
46
1.39
4265651--4265684
2
17.0
2
100
0
68
50
0
0
50
1.00
4265881--4265906
2
13.0
2
100
0
52
50
0
0
50
1.00
4281544--4281568
6
4.2
6
100
0
50
16
36
32
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4282216--4282250
18
1.9
18
88
0
52
57
2
31
8
1.44
4284317--4284343
3
9.0
3
100
0
54
33
0
0
66
0.92
4287850--4287919
20
3.7
18
80
12
77
12
1
7
78
1.01
4287853--4287911
11
5.9
10
72
20
52
15
1
6
76
1.07
4287853--4287911
5
11.8
5
77
15
52
15
1
6
76
1.07
4300187--4300481
40
7.5
40
75
10
268
28
13
16
41
1.86
4300187--4300485
81
3.8
80
80
9
328
28
14
16
41
1.87
4301653--4301720
25
2.6
27
77
11
79
11
1
8
77
1.04
4301676--4301711
19
1.9
19
88
5
56
16
0
8
75
1.04
4301759--4301792
9
3.9
9
88
3
52
23
0
8
67
1.18
4307307--4307355
2
24.5
2
82
0
62
44
2
6
46
1.39
4318837--4318866
10
3.1
10
95
4
53
63
0
0
36
0.95
4320910--4320942
14
2.4
14
94
0
57
0
9
3
87
0.63
4320910--4320945
13
2.7
13
91
4
54
0
11
2
86
0.68
4320910--4320948
14
2.6
15
88
8
53
0
12
2
84
0.72
4322812--4322837
10
2.6
10
100
0
52
46
0
0
53
1.00
4323646--4323802
62
2.6
62
80
6
187
41
10
13
34
1.79
4324449--4324506
29
2.0
29
96
0
107
46
5
0
48
1.24
4325043--4325163
65
1.9
64
84
3
163
48
9
5
35
1.60
4328069--4328110
21
2.0
21
100
0
84
19
14
33
33
1.91
4329280--4329317
18
2.1
19
85
5
51
52
5
0
42
1.24
4330451--4330525
38
2.0
36
87
5
105
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4330451--4330514
19
3.5
19
95
4
114
54
0
0
45
0.99
4331528--4331575
20
2.3
22
78
10
55
37
4
0
58
1.18
4333445--4333486
3
13.7
3
82
9
50
61
0
4
33
1.17
4333521--4333545
12
2.1
12
100
0
50
76
0
0
24
0.80
4333698--4333735
18
2.2
17
90
4
58
76
0
2
21
0.91
4333832--4333891
17
3.7
16
74
12
52
38
36
0
25
1.56
4335388--4335412
2
12.5
2
100
0
50
52
0
0
48
1.00
4337620--4337678
20
3.0
20
82
0
64
61
13
13
11
1.58
4337718--4337760
17
2.5
17
76
3
50
67
4
6
20
1.33
4338005--4338059
18
2.9
19
70
5
58
65
9
7
18
1.44
4338003--4338111
37
3.1
35
79
10
114
61
7
8
22
1.49
4338113--4338143
16
1.9
16
93
0
53
64
0
3
32
1.09
4345656--4345748
40
2.3
40
85
5
118
33
12
10
43
1.78
4345736--4345827
40
2.3
39
83
3
112
31
11
13
43
1.80
4345906--4346149
39
6.4
38
78
7
210
25
9
19
45
1.80
4345977--4346187
78
2.7
78
82
2
237
27
7
19
45
1.77
4346053--4346120
23
3.3
23
63
26
60
20
5
22
51
1.68
4346884--4346940
20
2.8
20
78
0
60
31
10
10
47
1.72
4347222--4347256
11
3.0
11
91
8
52
2
8
2
85
0.79
4347259--4347299
6
6.7
6
83
5
55
14
0
14
70
1.16
4347259--4347300
19
2.2
19
91
0
66
14
0
14
71
1.15
4347307--4347333
3
9.0
3
100
0
54
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4348440--4348479
20
2.0
20
85
0
53
35
0
5
60
1.19
4361660--4361714
22
2.5
22
100
0
110
38
14
18
29
1.90
4363280--4363319
14
2.6
16
77
22
50
55
0
0
45
0.99
4364283--4364319
3
12.3
3
88
0
56
0
0
64
35
0.94
4369666--4369692
10
2.7
10
100
0
54
48
0
0
51
1.00
4381093--4381436
45
7.5
45
78
6
323
29
12
18
38
1.88
4381084--4381436
93
3.8
93
80
5
331
31
12
18
37
1.88
4381186--4381453
137
2.0
137
90
0
428
29
11
19
38
1.88
4381171--4381504
45
7.1
50
78
8
179
30
11
18
39
1.86
4384607--4384646
13
3.2
13
82
3
55
42
0
0
57
0.98
4387141--4387171
3
10.3
3
100
0
62
35
0
0
64
0.94
4410327--4410451
15
8.6
15
66
18
52
1
32
2
64
1.16
4410327--4410452
19
6.5
19
69
17
73
1
32
2
63
1.17
4410462--4410513
12
4.2
12
85
2
68
0
46
0
53
1.00
4410462--4410513
18
2.8
18
85
2
68
0
46
0
53
1.00
4414660--4414701
21
2.0
21
81
9
50
69
0
4
26
1.08
4414700--4414724
13
1.9
13
100
0
50
60
0
0
40
0.97
4414752--4414786
3
11.7
3
100
0
70
34
0
0
65
0.93
4424286--4424333
21
2.2
22
81
11
62
47
12
16
22
1.80
4424292--4424334
21
2.0
21
90
0
68
46
13
18
20
1.83
4434418--4434444
14
1.9
14
100
0
54
25
0
0
74
0.83
4437675--4437750
23
3.6
23
71
20
83
42
14
7
35
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4437673--4437752
40
2.0
40
95
0
142
40
15
8
36
1.78
4438926--4438975
3
16.7
3
95
0
91
32
0
2
66
1.03
4439886--4439957
12
6.2
12
71
21
55
38
1
1
58
1.15
4441984--4442034
22
2.3
23
75
3
59
54
5
11
27
1.59
4442027--4442129
22
4.6
21
67
16
64
50
4
9
34
1.57
4442216--4442289
11
6.9
10
74
19
69
58
5
8
28
1.49
4442273--4442363
43
2.1
44
87
2
130
48
4
9
37
1.57
4442099--4442375
22
12.7
22
72
8
145
48
5
10
36
1.60
4442216--4442375
65
2.5
64
76
11
155
51
4
10
34
1.55
4442426--4442467
21
2.0
21
95
0
75
45
4
9
40
1.58
4442842--4442909
21
3.2
20
76
15
66
42
8
8
39
1.67
4443872--4443915
3
14.7
3
100
0
88
31
0
0
68
0.90
4444244--4444288
23
2.0
22
91
8
72
31
0
0
68
0.89
4445290--4445346
19
3.0
19
100
0
114
42
10
10
36
1.74
4445935--4445961
3
9.0
3
100
0
54
66
0
0
33
0.92
4446497--4446629
34
3.8
33
75
17
124
40
15
13
30
1.86
4446483--4446646
74
2.2
74
80
8
199
39
17
13
29
1.88
4446617--4446708
40
2.3
40
83
3
114
43
15
13
28
1.83
4446497--4446668
74
2.3
74
83
4
195
40
15
14
29
1.87
4454133--4454174
13
3.3
13
75
18
52
33
23
19
23
1.97
4454139--4454183
14
3.4
14
76
17
60
37
24
15
22
1.93
4454128--4454218
25
3.6
25
85
5
130
32
26
18
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4454808--4455026
16
13.7
15
70
14
102
48
31
1
19
1.57
4454818--4454946
33
3.9
33
75
18
101
48
31
2
17
1.60
4460980--4461011
2
16.0
2
100
0
64
50
0
0
50
1.00
4461610--4461676
27
2.6
25
77
15
64
28
4
2
64
1.28
4462121--4462167
3
15.7
3
100
0
94
31
0
0
68
0.90
4462306--4462370
5
13.4
5
78
18
50
78
6
0
15
0.94
4462297--4462359
18
3.8
17
74
18
60
76
4
0
19
0.96
4462716--4462765
20
2.5
20
96
3
93
62
14
0
24
1.32
4463926--4463952
13
2.1
13
100
0
54
29
7
14
48
1.71
4464806--4464903
49
2.0
49
90
2
153
44
0
3
52
1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402