genome.fa.s1.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  58  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10543378--10543426	19	2.6	18	90	9	80	18	0	0	81	0.69
10543377--10543426	14	3.8	13	82	17	59	20	0	0	80	0.72
10543377--10543429	23	2.3	24	84	15	76	20	0	0	79	0.74
10543377--10543429	4	13.8	4	74	21	51	20	0	0	79	0.74
10543460--10543546	5	17.6	5	69	21	51	13	5	3	77	1.09
10543452--10543546	17	6.3	15	72	19	65	13	7	3	75	1.13
10543563--10543961	60	6.7	58	89	4	575	44	7	13	34	1.72
10543563--10543961	177	2.2	177	91	1	647	44	7	13	34	1.72
10549453--10549490	15	2.5	15	87	12	51	52	5	36	5	1.47
10554361--10554428	8	7.9	9	71	15	63	77	0	10	11	0.98
10554382--10554442	15	3.9	16	81	12	65	77	0	13	9	1.00
10555448--10555676	42	5.5	42	86	9	310	24	16	21	36	1.94
10555448--10555678	127	1.8	127	90	3	376	24	16	22	36	1.94
10555701--10555751	12	4.5	11	78	9	57	84	9	0	5	0.78
10555701--10555750	16	2.9	16	82	8	55	84	10	0	6	0.79
10555701--10555751	10	5.6	9	77	11	50	84	9	0	5	0.78
10555898--10555937	16	2.5	16	88	12	64	17	0	2	80	0.83
10555899--10555937	8	4.9	8	84	12	53	15	0	2	82	0.79
10555899--10555946	23	2.0	24	84	4	62	16	2	2	79	0.93
10555918--10555959	11	3.5	12	83	6	50	23	2	2	71	1.10
10555977--10556087	45	2.5	46	81	11	131	26	2	1	69	1.12
10556659--10556696	18	2.1	18	90	9	60	50	2	47	0	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10556941--10556980	15	2.7	14	88	7	53	12	0	5	82	0.82
10557013--10557073	18	3.3	17	73	13	50	14	8	3	73	1.19
10557021--10557116	14	6.9	13	69	17	52	16	6	3	73	1.16
10557024--10557116	19	4.7	19	76	15	75	17	6	3	73	1.18
10557128--10557404	117	2.3	115	89	7	423	44	7	13	35	1.71
10557128--10557404	56	4.7	58	91	6	425	44	7	13	35	1.71
10558195--10558247	26	2.0	26	92	7	90	28	20	24	26	1.99
10558696--10558747	26	2.0	25	88	3	77	26	21	25	26	1.99
10559932--10559983	26	2.0	25	85	10	70	25	21	26	26	1.99
10560139--10560191	26	2.0	26	100	0	106	30	16	22	30	1.96
10560165--10560598	157	2.7	155	79	7	444	24	29	28	17	1.97
10561692--10561744	26	2.0	26	92	0	88	24	18	28	28	1.98
10561863--10562318	157	2.9	154	72	11	381	23	29	27	19	1.98
10562362--10562414	26	2.0	26	92	7	90	22	20	30	26	1.98
10562907--10562959	26	2.0	26	85	7	72	30	18	22	28	1.98
10562932--10563432	158	3.2	158	77	8	446	22	30	26	19	1.98
10563406--10563458	26	2.0	26	92	0	88	30	20	22	26	1.98
10563811--10564272	158	2.9	157	80	6	495	25	32	25	17	1.97
10564478--10564530	26	2.0	26	82	7	63	32	18	20	28	1.97
10564282--10564633	193	1.8	193	85	3	494	24	26	26	21	2.00
10563616--10565100	690	2.1	693	83	2	1838	24	29	26	20	1.99
10564504--10565001	157	3.2	155	78	5	545	22	29	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10564975--10565027	26	2.0	26	92	0	88	24	20	26	28	1.99
10565723--10566166	160	2.8	158	79	6	486	22	31	28	17	1.96
10567222--10567274	26	2.0	26	88	0	79	24	16	28	30	1.97
10567430--10567482	26	2.0	26	92	7	90	28	20	24	26	1.99
10567929--10567981	26	2.0	26	92	0	88	30	20	22	26	1.98
10568490--10568541	25	2.0	26	88	3	79	26	19	25	28	1.98
10568964--10569016	26	2.0	26	92	0	88	22	20	30	26	1.98
10568879--10569219	185	1.9	183	86	4	499	24	26	26	22	2.00
10569149--10569201	26	2.0	26	89	7	81	28	20	24	26	1.99
10569996--10570048	26	2.0	26	89	7	81	28	20	24	26	1.99
10570721--10570771	26	2.0	26	88	7	77	31	17	23	27	1.97
10570744--10571031	158	1.8	158	85	4	393	22	30	28	18	1.97
10570744--10571087	158	2.2	158	80	4	381	22	29	27	20	1.98
10571174--10571473	159	1.9	158	81	3	361	22	31	27	19	1.98
10571482--10571534	26	2.0	26	88	0	79	26	15	28	30	1.96
10571667--10571719	26	2.0	26	89	7	81	28	18	24	28	1.98
10571323--10571877	185	3.0	181	78	6	562	23	27	27	21	1.99
10572202--10572250	26	1.9	25	91	4	80	32	22	22	22	1.98
10572227--10572584	157	2.3	158	80	7	388	25	31	25	17	1.97
10572682--10572737	26	2.2	26	90	0	85	25	21	25	28	1.99
10573404--10573456	26	2.0	26	85	7	72	28	16	26	28	1.97
10573431--10573811	159	2.4	159	85	1	487	24	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10574672--10574723	26	2.0	26	88	7	79	32	15	25	26	1.95
10574166--10575251	515	2.1	502	81	6	1188	24	27	27	21	1.99
10575174--10575226	26	2.0	26	96	0	97	26	18	26	28	1.98
10576399--10576451	26	2.0	26	96	0	97	24	20	28	26	1.99
10576789--10577290	158	3.2	158	77	5	485	23	29	27	19	1.99
10577264--10577316	26	2.0	26	96	0	97	24	20	28	26	1.99
10577079--10577721	354	1.8	354	88	4	985	21	29	28	19	1.98
10577618--10577670	26	2.0	26	92	0	88	26	18	28	26	1.98
10577992--10578044	26	2.0	26	89	7	81	28	18	24	28	1.98
10578928--10579423	159	3.1	157	74	6	428	23	29	26	20	1.99
10579765--10579822	26	2.2	27	90	9	93	29	20	22	27	1.99
10579791--10580200	159	2.6	159	76	6	382	23	29	27	18	1.98
10580267--10580319	26	2.0	26	96	0	97	24	20	28	26	1.99
10579754--10581041	697	1.8	697	84	4	1754	23	29	26	20	1.99
10580964--10581016	26	2.0	26	85	7	72	24	20	26	28	1.99
10581323--10581383	26	2.4	26	81	10	74	29	18	24	27	1.98
10580595--10582176	868	1.8	869	82	2	2032	22	29	27	20	1.98
10582180--10582553	158	2.4	157	74	7	353	22	28	27	21	1.99
10582527--10582579	26	2.0	26	88	0	79	28	20	24	26	1.99
10583250--10583302	26	2.0	26	85	7	72	30	18	22	28	1.98
10583276--10583714	159	2.8	159	78	3	400	23	29	28	17	1.97
10583777--10584175	171	2.3	170	79	7	414	22	29	27	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10584851--10585249	157	2.5	156	74	5	372	23	29	28	18	1.98
10585326--10585376	26	2.0	26	88	0	75	25	19	27	27	1.99
10585888--10585940	26	2.0	26	92	0	88	26	20	26	26	1.99
10586616--10587113	158	3.2	157	80	3	577	25	31	25	18	1.97
10587087--10587138	25	2.1	24	86	10	70	30	23	19	26	1.98
10587837--10587889	26	2.0	26	89	7	81	30	18	22	28	1.98
10590772--10590824	26	2.0	26	88	0	79	26	18	26	28	1.98
10590950--10591394	155	2.8	158	78	5	492	24	29	27	18	1.98
10592034--10592496	159	2.9	158	80	3	430	23	31	27	17	1.97
10592503--10592555	26	2.0	26	92	0	88	24	18	28	28	1.98
10593236--10593288	26	2.0	26	89	7	81	28	18	24	28	1.98
10593738--10593790	26	2.0	26	92	7	90	26	20	26	26	1.99
10594262--10594314	26	2.0	26	92	0	88	24	18	26	30	1.98
10595481--10595803	171	1.9	171	83	2	409	23	30	26	18	1.98
10596511--10596563	26	2.0	26	85	7	72	30	16	24	28	1.97
10596993--10597045	26	2.0	26	88	0	79	24	20	28	26	1.99
10595650--10597117	679	2.1	687	81	4	1658	23	28	27	19	1.99
10597674--10597726	26	2.0	26	89	7	81	32	20	20	26	1.98
10597699--10598069	171	2.2	171	81	7	414	22	30	26	21	1.99
10598913--10598937	12	2.1	12	100	0	50	36	16	32	16	1.90
10605201--10605251	26	2.0	26	88	0	75	25	19	25	29	1.99
10605294--10605824	159	3.3	159	77	4	498	22	31	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10606062--10606114	26	2.0	26	92	0	88	26	16	28	28	1.97
10606793--10606845	26	2.0	26	92	7	90	28	20	24	26	1.99
10606989--10607039	26	2.0	26	88	7	77	29	17	23	29	1.97
10608168--10608220	26	2.0	26	92	0	88	24	15	28	32	1.95
10609826--10609877	11	4.7	11	80	0	59	13	23	32	30	1.93
10609825--10609886	22	2.8	22	87	0	88	16	22	32	29	1.95
10610463--10610757	158	1.9	158	81	2	360	23	32	23	20	1.97
10611224--10611276	26	2.0	26	85	7	72	32	18	20	28	1.97
10610341--10611993	875	1.9	874	82	2	2057	24	29	25	21	1.99
10612104--10612156	26	2.0	26	85	7	72	24	18	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402