genome.fa.s1.2.7.7.80.10.50.1000.314.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  314  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29404546--29404950	158	2.6	160	77	5	421	21	31	26	20	1.98
29404546--29404999	158	2.9	158	74	9	413	21	29	27	20	1.98
29405308--29405810	158	3.2	157	78	5	512	24	29	26	19	1.99
29406480--29406532	26	2.0	26	86	13	74	30	16	22	30	1.96
29407032--29407098	26	2.6	26	90	0	107	25	19	25	29	1.98
29408013--29408065	26	2.0	26	88	0	79	26	22	24	26	2.00
29408381--29408433	26	2.0	26	89	7	81	30	20	22	26	1.98
29408843--29408895	26	2.0	26	89	7	81	24	16	28	30	1.97
29409706--29409758	26	2.0	26	88	0	79	28	20	24	26	1.99
29410316--29410372	14	4.0	14	80	15	64	38	0	1	59	1.08
29410321--29410371	25	2.0	25	85	7	68	39	0	1	58	1.09
29410760--29410813	26	2.1	26	89	6	83	44	5	14	35	1.69
29411373--29411413	21	1.9	22	95	5	75	14	4	2	78	1.03
29411478--29411568	27	3.2	27	62	17	67	42	5	15	36	1.70
29411470--29411748	58	4.7	58	90	5	443	45	6	13	33	1.70
29411598--29411688	28	3.1	28	63	22	69	40	6	16	36	1.75
29411783--29411811	6	4.8	6	100	0	58	17	0	13	68	1.20
29416881--29417164	41	7.0	41	90	3	384	22	19	22	36	1.95
29417172--29417208	8	4.5	8	93	6	65	89	10	0	0	0.49
29417172--29417208	17	2.2	17	95	4	67	89	10	0	0	0.49
29417493--29417549	14	4.0	14	80	15	64	38	0	1	59	1.08
29417498--29417548	25	2.0	25	85	7	68	39	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29418511--29418567	27	2.1	27	80	6	62	15	5	1	77	1.03
29418527--29418567	21	1.9	22	90	5	66	12	4	2	80	0.97
29418536--29418597	29	2.1	30	82	11	74	11	8	1	79	1.01
29418631--29418721	27	3.2	27	62	17	67	42	5	15	36	1.70
29418623--29419023	58	6.7	59	88	6	585	46	6	13	33	1.68
29418623--29419023	120	3.4	118	91	4	619	46	6	13	33	1.68
29418623--29419023	182	2.2	179	92	3	648	46	6	13	33	1.68
29419058--29419086	6	4.8	6	100	0	58	17	0	13	68	1.20
29419666--29419718	26	2.0	26	92	0	88	24	18	28	28	1.98
29420008--29420060	26	2.0	26	96	0	97	24	20	28	26	1.99
29420205--29420255	26	2.0	26	88	7	77	31	13	25	29	1.94
29419997--29420364	196	1.9	196	87	1	540	22	26	28	22	1.99
29420231--29420721	158	3.1	157	74	7	386	24	29	26	19	1.99
29420703--29420755	26	2.0	26	88	0	79	26	18	24	30	1.98
29421397--29421449	26	2.0	26	92	7	90	28	20	24	26	1.99
29421445--29421963	270	1.9	270	83	3	677	23	32	27	16	1.96
29422009--29422065	26	2.2	26	87	6	80	24	19	26	29	1.98
29422754--29423155	158	2.5	158	77	5	375	24	28	27	19	1.98
29423405--29423937	158	3.4	157	76	6	468	22	30	26	20	1.98
29425467--29425519	26	2.0	26	92	0	88	26	20	26	26	1.99
29426317--29426447	26	5.0	26	96	0	235	24	19	29	27	1.98
29426789--29427290	158	3.2	158	77	5	440	21	28	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29427265--29427316	26	2.0	25	88	3	77	26	21	23	28	1.99
29427985--29428037	26	2.0	26	82	7	63	30	16	22	30	1.96
29428010--29428670	159	4.2	157	78	5	596	23	29	27	20	1.99
29428010--29428670	317	2.1	317	79	5	685	23	29	27	20	1.99
29428854--29429146	158	1.8	159	82	5	378	24	32	24	18	1.97
29428819--29429199	159	2.4	157	78	6	419	24	32	25	18	1.97
29429318--29429370	26	2.0	26	92	0	88	24	18	28	28	1.98
29429843--29429895	26	2.0	26	88	0	79	26	18	26	28	1.98
29429001--29430452	525	2.8	522	78	4	1423	23	28	27	21	1.99
29430370--29430422	26	2.0	26	85	0	70	28	18	24	28	1.98
29430720--29430771	26	2.0	26	88	0	77	30	17	25	26	1.97
29430746--29431564	159	5.2	157	74	7	674	22	29	27	20	1.98
29430745--29431564	317	2.6	315	84	4	1015	22	29	27	20	1.98
29432258--29432310	26	2.0	26	86	13	74	30	20	20	28	1.98
29433323--29433375	26	2.0	26	88	0	79	26	18	26	28	1.98
29434229--29434281	26	2.0	26	88	0	79	24	20	26	28	1.99
29434740--29434789	26	1.9	26	87	0	73	36	20	20	24	1.95
29434898--29434925	12	2.3	12	100	0	56	7	32	25	35	1.83
29434923--29435312	158	2.5	156	78	7	403	25	29	25	19	1.98
29434923--29435388	159	2.9	154	75	7	425	24	29	27	19	1.98
29435427--29435477	26	2.0	26	88	7	77	25	9	33	31	1.88
29434419--29436464	685	3.0	684	79	6	2092	23	28	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29435624--29435676	26	2.0	26	85	7	72	30	18	22	28	1.98
29435333--29435826	186	2.6	198	80	7	491	24	27	27	21	1.99
29434226--29436254	701	2.9	685	78	7	2077	24	28	27	20	1.99
29435650--29436152	159	3.2	157	76	5	487	24	28	26	21	1.99
29436126--29436181	26	2.2	26	93	0	94	25	17	26	30	1.97
29436505--29436557	26	2.0	26	89	7	81	28	18	24	28	1.98
29437006--29437058	26	2.0	26	85	0	70	24	18	26	30	1.98
29438071--29438123	26	2.0	26	92	0	88	30	20	22	26	1.98
29438465--29438517	26	2.0	26	88	0	79	26	18	26	28	1.98
29438503--29438794	158	1.8	158	82	4	374	23	30	26	18	1.98
29438490--29438827	158	2.1	158	78	5	351	23	28	26	20	1.99
29439003--29439055	26	2.0	26	89	7	81	30	18	24	26	1.98
29438775--29439279	196	2.6	188	81	6	556	24	28	24	21	1.99
29439187--29439239	26	2.0	26	85	7	72	24	18	26	30	1.98
29439870--29439920	26	2.0	26	88	0	75	27	11	31	29	1.92
29440067--29440119	26	2.0	26	88	0	79	26	18	26	28	1.98
29440252--29440304	26	2.0	26	85	0	70	28	18	26	26	1.98
29439973--29440412	185	2.4	185	85	0	592	24	27	26	21	1.99
29440619--29440671	26	2.0	26	82	7	63	30	20	20	28	1.98
29441902--29442396	159	3.1	158	74	6	381	23	28	27	21	1.99
29442374--29442429	26	2.2	25	85	14	80	26	19	25	28	1.99
29444582--29444634	26	2.0	26	89	7	81	24	24	22	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29444559--29445186	184	3.3	184	76	15	617	19	25	29	25	1.98
29444769--29444818	26	1.9	26	92	8	84	24	24	20	32	1.98
29444975--29445026	25	2.0	26	92	3	88	26	28	19	25	1.98
29445318--29445370	26	2.0	26	88	0	79	24	22	20	32	1.98
29446225--29446274	26	1.9	26	91	0	82	24	28	20	28	1.99
29446716--29446773	26	2.2	26	90	9	91	27	22	20	29	1.99
29446880--29447259	157	2.4	158	82	11	440	19	25	29	26	1.98
29448445--29448497	26	2.0	26	89	7	81	32	24	15	28	1.95
29448883--29449354	159	3.0	159	78	4	423	20	26	29	22	1.99
29449324--29449379	26	2.2	26	87	6	78	30	21	17	30	1.96
29449877--29449929	26	2.0	26	89	7	81	28	26	18	26	1.98
29450601--29450660	26	2.4	26	86	5	88	26	25	20	28	1.99
29451093--29451142	26	1.9	26	88	8	75	24	26	22	28	1.99
29451405--29451429	13	1.9	13	100	0	50	12	48	16	24	1.79
29451469--29451521	26	2.0	26	89	7	81	30	26	15	28	1.96
29451969--29452021	26	2.0	26	85	7	72	26	24	22	26	2.00
29450590--29452719	879	2.4	865	82	3	2411	21	27	27	23	1.99
29452345--29452400	26	2.2	26	83	6	69	26	25	21	26	1.99
29453326--29453375	26	1.9	26	92	8	84	24	24	22	30	1.99
29453482--29453866	159	2.4	158	78	6	359	18	28	30	22	1.97
29453482--29453877	158	2.5	159	78	7	410	18	28	30	22	1.98
29454149--29454201	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29454490--29454541	26	2.0	26	85	7	70	25	23	21	30	1.99
29455210--29455262	26	2.0	26	92	0	88	26	26	20	26	1.99
29455233--29455578	158	2.2	158	80	5	385	21	23	28	25	1.99
29456430--29456482	26	2.0	26	85	7	72	26	24	20	28	1.99
29457388--29457440	26	2.0	26	92	0	88	26	26	20	26	1.99
29458285--29458337	26	2.0	26	92	0	88	26	26	18	28	1.98
29458707--29459131	171	2.5	171	78	6	441	19	25	29	25	1.98
29459105--29459157	26	2.0	26	88	0	79	26	26	20	26	1.99
29459284--29459633	159	2.2	159	78	4	364	21	24	28	24	1.99
29459607--29459659	26	2.0	26	85	7	72	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402