genome.fa.s1.2.7.7.80.10.50.1000.396.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  396  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35798129--35798182	26	2.1	26	89	0	81	27	16	27	27	1.97
35797584--35798879	368	3.6	366	80	4	1261	22	28	27	21	1.99
35798499--35798551	26	2.0	26	92	7	90	28	20	24	26	1.99
35799167--35799219	26	2.0	26	88	0	79	26	18	26	28	1.98
35799356--35799646	159	1.8	159	83	2	388	22	30	28	18	1.97
35799694--35799746	26	2.0	26	96	0	97	28	16	24	30	1.97
35800445--35800890	158	2.8	157	76	10	355	23	32	28	16	1.96
35802149--35802701	159	3.5	159	78	3	612	23	30	26	19	1.98
35802149--35802786	159	4.0	159	76	3	577	22	30	27	19	1.98
35802192--35802841	317	2.1	317	83	1	820	23	30	26	19	1.98
35802815--35802867	26	2.0	26	85	7	72	28	15	24	32	1.95
35803317--35803369	26	2.0	26	88	0	79	24	20	28	26	1.99
35804390--35804442	26	2.0	26	92	7	90	28	20	24	26	1.99
35804890--35804942	26	2.0	26	85	0	70	28	22	22	26	1.99
35805258--35805310	26	2.0	26	89	7	81	30	20	22	26	1.98
35805099--35805574	196	2.5	190	82	5	561	24	28	27	19	1.98
35811634--35811684	26	2.0	25	92	3	84	25	15	29	29	1.96
35812855--35812907	26	2.0	26	92	0	88	24	18	28	28	1.98
35813868--35813920	26	2.0	26	82	7	63	30	18	20	30	1.97
35813866--35814222	196	1.8	195	86	4	513	26	26	24	22	2.00
35814090--35814802	159	4.6	158	77	8	649	24	29	27	18	1.98
35814090--35814832	305	2.4	305	81	5	814	23	30	27	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35814870--35814922	26	2.0	26	92	0	88	24	18	28	28	1.98
35816091--35816142	26	2.0	26	88	0	77	23	17	30	28	1.97
35816458--35816510	26	2.0	26	85	7	72	30	18	22	28	1.98
35816654--35816706	26	2.0	26	89	7	81	28	22	24	24	2.00
35817552--35817988	159	2.8	158	75	2	358	23	29	26	21	1.99
35818017--35818072	26	2.2	26	90	0	85	26	17	25	30	1.97
35818108--35818132	13	1.9	13	100	0	50	24	24	48	4	1.68
35818840--35818892	26	2.0	26	96	0	97	24	20	28	26	1.99
35819206--35819258	26	2.0	26	92	7	90	26	16	26	30	1.97
35819929--35819981	26	2.0	26	89	7	81	30	20	22	26	1.98
35819954--35820385	159	2.7	158	77	7	410	25	30	26	17	1.97
35820537--35820842	159	1.9	158	80	4	348	22	30	28	18	1.98
35820877--35820928	25	2.0	26	92	3	88	25	21	26	26	1.99
35823238--35823290	26	2.0	26	89	7	81	28	18	24	28	1.98
35823743--35823793	26	2.0	26	88	0	75	25	17	27	29	1.98
35824107--35824159	26	2.0	26	88	0	79	22	18	28	30	1.98
35823948--35824397	184	2.4	184	84	2	539	24	27	28	20	1.99
35826412--35826464	26	2.0	26	82	7	63	30	20	18	30	1.97
35826253--35827246	364	2.7	363	81	5	1128	24	28	26	20	1.99
35827550--35827602	26	2.0	26	82	7	63	32	18	22	26	1.97
35828052--35828104	26	2.0	26	85	7	72	28	18	24	28	1.98
35827735--35828548	355	2.3	343	79	7	802	25	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35828579--35828631	26	2.0	26	89	7	81	30	20	22	26	1.98
35828248--35828789	184	3.0	179	79	7	506	25	29	25	20	1.99
35828605--35829106	158	3.2	158	73	8	387	23	29	26	21	1.99
35828574--35829744	502	2.3	500	86	2	1600	23	28	26	20	1.99
35829582--35829634	26	2.0	26	96	0	97	24	20	28	26	1.99
35830997--35831048	26	2.0	26	88	0	77	25	15	28	30	1.96
35831662--35832163	159	3.2	154	76	8	429	22	29	27	20	1.98
35832137--35832189	26	2.0	26	88	0	79	24	16	28	30	1.97
35832840--35833268	159	2.7	158	80	3	477	24	31	27	17	1.97
35833316--35833368	26	2.0	26	92	7	90	26	16	26	30	1.97
35833655--35833707	26	2.0	26	88	0	79	11	37	24	26	1.89
35833717--35833769	26	2.0	26	96	0	97	32	20	22	24	1.98
35833881--35834235	158	2.2	159	77	6	371	23	30	26	19	1.98
35834217--35834269	26	2.0	26	85	7	72	24	16	26	32	1.97
35835480--35835533	26	2.0	27	92	3	92	25	20	27	25	1.99
35834912--35835824	356	2.5	353	82	5	1042	23	29	26	20	1.99
35835860--35835912	26	2.0	26	85	7	72	30	18	22	28	1.98
35836018--35836070	26	2.0	26	89	7	81	28	20	24	26	1.99
35836648--35836680	11	3.0	11	90	0	57	15	36	30	18	1.91
35836750--35836801	25	2.0	26	89	10	81	28	21	23	26	1.99
35836933--35836985	26	2.0	26	88	0	79	26	18	26	28	1.98
35837660--35838161	159	3.2	157	78	5	501	22	27	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35838137--35838187	26	2.0	26	92	0	84	29	19	27	23	1.98
35838868--35838919	26	2.0	26	85	7	70	26	17	26	28	1.97
35839369--35839421	26	2.0	26	92	7	90	26	20	26	26	1.99
35838865--35839909	502	2.1	502	83	3	1298	24	27	26	21	1.99
35841582--35841634	26	2.0	26	88	0	79	24	15	32	28	1.95
35842858--35843251	159	2.5	158	79	3	443	25	29	26	18	1.98
35845762--35845814	26	2.0	26	82	7	63	28	20	24	26	1.99
35847540--35847885	158	2.2	157	78	5	349	26	31	23	18	1.98
35847596--35847980	159	2.4	157	78	5	393	23	30	26	19	1.98
35847038--35847977	512	1.8	512	81	2	1152	24	29	26	20	1.99
35849967--35850016	26	1.9	26	88	8	75	34	18	24	24	1.96
35849990--35850411	160	2.6	159	77	4	427	23	28	28	18	1.98
35850470--35850522	26	2.0	26	88	0	79	20	20	32	26	1.98
35851444--35851543	38	2.7	38	87	4	132	29	20	39	12	1.88
35852200--35852252	26	2.0	26	92	0	88	24	18	28	28	1.98
35852890--35852942	26	2.0	26	89	7	81	30	20	22	26	1.98
35852915--35853352	159	2.8	158	72	9	404	23	30	26	19	1.98
35853390--35853442	26	2.0	26	85	7	72	24	15	28	32	1.95
35854045--35854448	159	2.5	159	76	3	391	22	29	29	18	1.98
35854514--35854566	26	2.0	26	88	0	79	28	16	24	30	1.97
35854890--35855700	316	2.6	312	81	4	876	23	28	26	21	1.99
35855109--35855635	159	3.3	158	74	6	490	22	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35855555--35855849	148	2.0	148	80	3	333	22	29	28	20	1.98
35855831--35855883	26	2.0	26	96	0	97	24	20	28	26	1.99
35856301--35857399	490	2.2	493	81	4	1221	26	28	24	20	1.99
35856859--35857347	158	3.1	156	76	4	462	24	30	25	19	1.98
35857322--35857372	26	2.0	25	88	3	75	27	19	23	29	1.98
35856964--35859178	864	2.6	867	80	6	2337	24	28	26	20	1.99
35859054--35859106	26	2.0	26	92	0	88	24	18	28	28	1.98
35859316--35859365	26	1.9	26	87	0	73	22	6	12	60	1.53
35859775--35859827	26	2.0	26	82	7	63	28	18	24	28	1.98
35860491--35860543	26	2.0	26	89	7	81	28	18	24	28	1.98
35861689--35861741	26	2.0	26	89	7	81	30	20	22	26	1.98
35861714--35862162	159	2.8	158	76	4	447	25	29	26	18	1.98
35862190--35862242	26	2.0	26	88	0	79	26	18	24	30	1.98
35862362--35862668	159	1.9	158	82	4	377	25	28	27	19	1.99
35862706--35862758	26	2.0	26	88	0	79	28	16	24	30	1.97
35863338--35863390	26	2.0	26	89	7	81	30	20	22	26	1.98
35863363--35863807	157	2.8	156	73	5	421	23	28	27	20	1.99
35863363--35863863	158	3.2	156	73	7	440	23	28	26	20	1.99
35863837--35863889	26	2.0	26	92	0	88	24	18	28	28	1.98
35865257--35865309	26	2.0	26	92	7	90	28	20	24	26	1.99
35864141--35865539	698	2.0	698	86	3	1976	27	24	24	23	2.00
35865454--35866546	367	3.1	338	80	7	1098	24	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35866100--35866152	26	2.0	26	96	0	97	24	20	28	26	1.99
35866467--35866519	26	2.0	26	96	0	97	24	20	28	26	1.99
35879078--35879130	26	2.0	26	86	13	74	28	16	24	30	1.97
35879103--35879405	158	1.9	158	85	4	423	22	31	28	18	1.97
35879103--35879445	158	2.2	158	82	5	392	23	30	27	18	1.98
35879420--35879471	26	2.0	26	88	3	79	26	19	26	26	1.99
35879077--35879938	367	2.4	341	76	12	798	23	29	26	19	1.98
35879837--35880400	158	3.6	157	73	7	494	23	30	27	18	1.98
35880996--35881048	26	2.0	26	89	7	81	26	22	24	26	2.00
35881179--35881754	159	3.6	159	76	5	581	25	28	26	19	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402