genome.fa.s1.2.7.7.80.10.50.1000.355.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  355  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32510715--32510767	26	2.0	26	92	0	88	24	18	28	28	1.98
32510398--32511523	343	3.3	340	85	2	1387	23	28	28	19	1.99
32511058--32511110	26	2.0	26	92	7	90	26	20	26	26	1.99
32511597--32511647	26	2.0	26	92	7	86	29	21	21	27	1.99
32512101--32512153	26	2.0	26	88	0	79	30	16	26	26	1.97
32512606--32512965	159	2.3	158	77	6	343	21	32	25	20	1.98
32513334--32513386	26	2.0	26	88	0	79	26	18	28	26	1.98
32513516--32513924	158	2.6	159	77	6	447	22	29	26	20	1.99
32513516--32513973	159	2.9	159	76	5	462	22	29	28	20	1.98
32515095--32515147	26	2.0	26	81	0	61	24	22	22	30	1.99
32514953--32515305	184	1.9	184	80	3	415	22	29	26	21	1.99
32515137--32515522	158	2.4	158	81	3	465	23	29	29	18	1.97
32514756--32515463	342	2.1	343	78	5	725	23	29	27	19	1.98
32516376--32516427	26	2.0	26	84	0	68	26	15	26	30	1.96
32516768--32517213	159	2.8	157	77	7	463	25	30	26	17	1.97
32518312--32518363	26	2.0	26	88	7	79	28	17	25	28	1.97
32518475--32518841	159	2.3	159	77	7	370	22	29	26	20	1.99
32518812--32518864	26	2.0	26	92	0	88	26	20	26	26	1.99
32519217--32519719	158	3.2	158	75	6	381	23	29	26	20	1.99
32519693--32519745	26	2.0	26	88	0	79	26	18	26	28	1.98
32518108--32519988	881	2.1	880	83	2	2366	23	28	26	20	1.99
32519217--32520480	698	1.8	685	83	3	1674	23	29	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32520391--32520443	26	2.0	26	92	0	88	24	18	28	28	1.98
32521645--32521697	26	2.0	26	92	0	88	30	20	22	26	1.98
32520989--32521771	343	2.3	340	84	3	1031	25	28	26	19	1.98
32522367--32522419	26	2.0	26	89	7	81	30	20	20	28	1.98
32522723--32523385	318	2.1	324	81	5	765	22	29	27	19	1.98
32522843--32523331	159	3.1	157	73	10	427	22	30	28	18	1.98
32522955--32523385	159	2.7	157	76	7	397	22	30	27	19	1.98
32523359--32523411	26	2.0	26	88	0	79	26	22	26	24	2.00
32523741--32523793	26	2.0	26	92	7	90	28	20	24	26	1.99
32524243--32524292	26	2.0	26	88	4	75	24	20	26	30	1.98
32524609--32524661	26	2.0	26	81	0	61	26	16	24	32	1.97
32525330--32525382	26	2.0	26	86	13	74	28	20	24	26	1.99
32525523--32525842	171	1.9	170	84	1	435	20	30	27	20	1.98
32525519--32525881	171	2.1	171	81	4	419	22	29	27	21	1.99
32525855--32525907	26	2.0	26	86	13	74	32	18	24	24	1.97
32526783--32526832	26	1.9	26	88	8	75	28	24	18	30	1.97
32527501--32527553	26	2.0	26	88	0	79	32	26	18	22	1.97
32527969--32528021	26	2.0	26	89	7	81	28	24	18	28	1.98
32528352--32528402	26	2.0	26	84	7	68	31	21	19	27	1.97
32528472--32528870	159	2.5	159	78	4	396	18	29	28	23	1.98
32529567--32530066	158	3.2	157	78	8	548	19	26	30	23	1.98
32530040--32530092	26	2.0	26	85	7	72	24	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32535077--32535571	160	3.1	158	78	8	495	21	28	28	22	1.99
32535555--32535606	26	2.0	25	85	10	70	26	23	17	32	1.96
32535933--32535985	26	2.0	26	85	7	72	28	30	16	24	1.97
32537151--32537203	26	2.0	26	85	0	70	30	26	16	26	1.97
32537498--32537550	26	2.0	26	85	7	72	26	22	18	32	1.97
32539063--32539140	26	3.0	26	92	1	131	29	26	17	25	1.98
32539246--32539619	159	2.3	160	78	7	411	20	25	28	25	1.99
32539729--32540262	159	3.4	160	76	5	449	20	26	28	23	1.99
32539814--32540801	513	1.9	513	85	2	1378	20	27	29	23	1.99
32541465--32541517	26	2.0	26	85	0	70	30	26	16	26	1.97
32542657--32542709	26	2.0	26	86	13	74	30	24	16	28	1.97
32543341--32543393	26	2.0	26	85	7	72	24	22	22	30	1.99
32543477--32543550	28	2.6	29	91	2	114	33	27	20	18	1.96
32543663--32543715	26	2.0	26	96	0	97	26	28	20	24	1.99
32543689--32544178	159	3.1	156	77	4	516	18	28	31	22	1.97
32544163--32544215	26	2.0	26	85	7	72	28	22	20	28	1.99
32544479--32544504	13	2.0	13	100	0	52	0	38	30	30	1.58
32544570--32545072	159	3.2	158	76	6	498	20	26	29	24	1.99
32554231--32554283	26	2.0	26	92	7	90	28	16	24	30	1.97
32554731--32554782	26	2.0	26	85	3	70	26	19	25	28	1.98
32554912--32555439	157	3.4	157	79	5	557	24	29	25	19	1.99
32556958--32557462	159	3.2	158	76	5	410	23	28	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32557436--32557488	26	2.0	26	92	0	88	28	16	22	32	1.96
32557835--32558281	159	2.8	157	76	6	418	24	29	26	19	1.98
32558323--32558375	26	2.0	26	89	7	81	30	18	24	26	1.98
32557634--32559914	513	4.5	506	74	9	1819	23	29	26	20	1.99
32558824--32558876	26	2.0	26	85	0	70	22	16	30	30	1.96
32558507--32559239	343	2.1	343	83	2	891	23	29	26	20	1.99
32559167--32559219	26	2.0	26	92	7	90	28	16	24	30	1.97
32559825--32559877	26	2.0	26	96	0	97	24	20	26	28	1.99
32560034--32560086	26	2.0	26	89	7	81	30	20	22	26	1.98
32560267--32560562	158	1.9	158	80	6	348	23	30	26	19	1.98
32560536--32560588	26	2.0	26	88	0	79	26	20	24	28	1.99
32559245--32560880	711	2.3	708	82	2	1940	24	29	26	20	1.99
32560881--32560910	15	1.9	16	93	6	53	3	40	23	33	1.71
32560908--32561319	158	2.6	159	78	3	384	24	28	26	20	1.99
32561403--32561455	26	2.0	26	89	7	81	26	18	26	28	1.98
32560940--32561992	489	2.1	494	79	5	1090	25	28	26	20	1.99
32562251--32562309	26	2.3	26	85	5	77	25	16	27	30	1.97
32562937--32562989	26	2.0	26	89	7	81	30	20	22	26	1.98
32563282--32563332	26	2.0	26	92	0	84	29	19	27	23	1.98
32563477--32563529	26	2.0	26	89	7	81	30	18	22	28	1.98
32563938--32563988	26	2.0	26	96	0	93	27	19	25	27	1.99
32564826--32564878	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32565255--32565633	158	2.4	157	79	4	411	23	30	27	19	1.98
32566385--32566437	26	2.0	26	92	0	88	26	20	28	24	1.99
32566068--32566766	355	2.0	343	81	7	811	23	28	27	20	1.99
32567222--32567689	159	2.9	156	76	8	471	23	31	26	17	1.97
32567725--32567777	26	2.0	26	85	0	70	26	16	26	30	1.97
32567751--32568117	170	2.2	170	82	1	439	21	31	26	20	1.98
32568091--32568143	26	2.0	26	85	0	70	26	20	26	26	1.99
32568592--32568644	26	2.0	26	88	0	79	24	16	28	30	1.97
32568947--32568999	26	2.0	26	89	7	81	28	18	24	28	1.98
32568429--32569082	355	1.8	355	81	3	814	24	27	27	20	1.99
32571470--32571522	26	2.0	26	86	13	74	28	16	24	30	1.97
32572393--32572437	21	2.1	21	87	0	63	4	42	22	31	1.73
32572602--32572654	26	2.0	26	88	0	79	26	18	26	28	1.98
32573029--32573602	159	3.5	158	77	7	540	23	30	27	18	1.98
32573676--32573780	26	4.0	26	92	0	174	24	15	27	32	1.95
32574450--32574502	26	2.0	26	92	7	90	28	20	24	26	1.99
32574487--32574686	106	1.9	107	82	5	253	29	24	29	17	1.97
32574898--32574950	26	2.0	26	89	7	81	26	20	28	24	1.99
32574577--32577110	672	3.7	673	79	4	2381	23	28	26	21	1.99
32576255--32576307	26	2.0	26	85	0	70	24	15	28	32	1.95
32576622--32576674	26	2.0	26	89	7	81	28	20	22	28	1.99
32576962--32577014	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32578574--32578651	30	2.8	26	83	14	111	29	19	25	25	1.98
32578584--32578646	30	2.1	30	100	0	126	31	15	26	25	1.96
32579394--32579446	26	2.0	26	92	0	88	30	16	22	30	1.96
32579604--32580104	158	3.2	157	77	5	522	22	28	28	20	1.98
32579762--32580888	343	3.3	340	84	2	1346	23	28	27	19	1.98
32580421--32580473	26	2.0	26	89	7	81	26	18	26	28	1.98
32580764--32580816	26	2.0	26	92	7	90	24	20	26	28	1.99
32580960--32581012	26	2.0	26	92	7	90	28	20	24	26	1.99
32580983--32581487	158	3.2	159	76	7	425	23	29	26	19	1.98
32581464--32581513	26	1.9	26	83	0	64	32	18	26	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402