genome.fa.s1.2.7.7.80.10.50.1000.360.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  360  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32905581--32907079	701	2.1	705	80	5	1672	23	28	26	21	1.99
32906836--32907405	158	3.6	155	73	5	455	25	28	26	19	1.99
32913047--32913099	26	2.0	26	85	7	72	28	20	24	26	1.99
32913766--32913817	26	2.0	26	92	7	88	28	19	25	26	1.98
32913990--32914425	159	2.8	158	76	7	427	22	30	28	18	1.97
32914643--32914976	158	2.1	158	81	4	370	20	31	29	18	1.97
32914798--32915531	354	2.1	354	83	4	892	22	29	27	20	1.99
32913791--32915335	512	3.0	520	78	7	1363	22	29	27	20	1.98
32915183--32915677	196	2.6	187	80	6	518	25	28	26	19	1.99
32915538--32915590	26	2.0	26	89	7	81	30	22	20	26	1.98
32915570--32915787	112	1.9	112	84	9	293	27	31	26	15	1.96
32916176--32916228	26	2.0	26	89	7	81	30	20	22	26	1.98
32917197--32917248	26	2.0	26	92	7	88	28	19	25	26	1.98
32917221--32917642	159	2.7	158	78	7	451	22	30	28	18	1.97
32917699--32917749	26	2.0	26	88	0	75	27	13	29	29	1.94
32917221--32918438	670	1.8	671	82	4	1571	22	29	27	20	1.99
32917863--32918394	158	3.4	157	73	6	457	22	28	26	21	1.99
32919090--32919143	26	2.1	26	93	6	92	29	20	22	27	1.98
32919115--32919544	159	2.7	157	74	7	413	23	30	27	19	1.98
32919591--32919643	26	2.0	26	92	0	88	26	20	26	26	1.99
32919758--32920094	158	2.1	159	83	3	412	21	30	28	19	1.98
32920826--32920878	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32921501--32921804	159	1.9	157	86	4	432	23	31	27	17	1.97
32930179--32930231	26	2.0	26	85	0	70	26	20	22	30	1.98
32930370--32930664	159	1.9	159	82	2	378	25	29	26	18	1.98
32931077--32931129	26	2.0	26	89	7	81	26	16	28	28	1.97
32930931--32931386	184	2.5	184	87	2	664	23	26	28	20	1.99
32931261--32931313	26	2.0	26	88	0	79	26	18	26	28	1.98
32931943--32931995	26	2.0	26	85	7	72	30	18	22	28	1.98
32932443--32932493	26	2.0	26	88	0	75	27	13	25	33	1.94
32932614--32932917	159	1.9	159	81	2	369	21	26	30	20	1.98
32932969--32933047	26	3.0	26	90	0	122	25	17	27	29	1.98
32933345--32933397	26	2.0	26	89	7	81	28	20	24	26	1.99
32934185--32934543	159	2.3	159	80	4	386	24	31	24	19	1.98
32934318--32934679	159	2.3	158	82	2	422	24	31	26	17	1.97
32934704--32934756	26	2.0	26	88	0	79	26	18	26	28	1.98
32935492--32935769	145	1.9	146	88	2	416	25	28	26	19	1.99
32936652--32936704	26	2.0	26	88	0	79	24	18	26	30	1.98
32936377--32936745	197	1.9	197	85	1	515	24	29	25	20	1.99
32937284--32937316	11	3.0	11	100	0	66	18	36	27	18	1.94
32937386--32937438	26	2.0	26	92	7	90	30	20	22	26	1.98
32937412--32937985	157	3.6	157	77	3	540	23	28	28	19	1.98
32938607--32938981	158	2.4	158	78	4	416	26	29	24	19	1.98
32940733--32941060	159	2.1	159	80	1	361	22	28	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32947028--32947080	26	2.0	26	92	0	88	24	18	28	28	1.98
32947216--32947507	158	1.8	159	85	0	406	23	31	28	16	1.96
32947552--32947604	26	2.0	26	85	0	70	28	15	22	33	1.94
32949768--32949820	26	2.0	26	89	7	81	28	18	24	28	1.98
32949793--32950231	159	2.8	157	78	4	416	24	28	28	18	1.98
32950270--32950324	27	2.0	27	86	6	76	25	18	27	29	1.98
32952526--32953119	158	3.8	158	77	4	560	22	30	27	18	1.98
32953157--32953207	26	2.0	26	92	0	84	27	17	25	29	1.98
32953878--32953930	26	2.0	26	88	0	79	28	24	22	24	2.00
32956618--32956670	26	2.0	26	92	0	88	24	15	28	32	1.95
32963271--32963323	26	2.0	26	89	7	81	30	18	24	26	1.98
32963768--32963819	26	2.0	26	92	0	86	25	17	25	32	1.97
32964136--32964188	26	2.0	26	86	13	74	28	15	26	30	1.96
32964637--32964689	26	2.0	26	85	7	72	30	16	22	30	1.96
32966489--32966541	26	2.0	26	85	7	72	26	16	26	30	1.97
32968429--32968486	26	2.2	27	84	9	75	31	18	20	29	1.97
32968770--32968822	26	2.0	26	92	0	88	26	20	26	26	1.99
32969164--32969667	160	3.2	159	77	5	554	22	28	27	21	1.99
32970545--32970597	26	2.0	26	92	0	88	24	18	28	28	1.98
32971267--32971319	26	2.0	26	89	7	81	28	18	24	28	1.98
32971293--32971525	128	1.8	128	82	3	299	25	26	31	16	1.96
32973025--32973075	26	2.0	26	92	0	84	25	19	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32973394--32973446	26	2.0	26	85	7	72	30	22	22	24	1.99
32973419--32973798	157	2.4	157	79	4	435	25	30	27	17	1.97
32974542--32974594	26	2.0	26	92	0	88	24	18	30	26	1.98
32975734--32975772	20	2.0	20	100	0	78	20	17	30	30	1.96
32976400--32976452	26	2.0	26	92	0	88	28	15	24	32	1.95
32977117--32977167	26	2.0	26	84	7	68	27	19	21	31	1.97
32977813--32977865	26	2.0	26	85	7	72	32	16	24	26	1.97
32977838--32978254	159	2.6	159	78	4	430	24	28	28	18	1.98
32978315--32978367	26	2.0	26	92	0	88	24	18	28	28	1.98
32979291--32979343	26	2.0	26	89	7	81	26	20	26	26	1.99
32979316--32979649	171	2.0	170	80	8	374	23	31	25	19	1.98
32979684--32980029	159	2.2	159	81	3	374	24	30	25	19	1.98
32980003--32980055	26	2.0	26	88	0	79	26	18	26	28	1.98
32980486--32980538	26	2.0	26	92	7	90	28	20	24	26	1.99
32980511--32980969	158	2.9	156	75	7	435	24	31	25	18	1.98
32980980--32981035	26	2.2	25	87	6	78	25	17	28	28	1.98
32981340--32981392	26	2.0	26	82	7	63	30	22	18	28	1.98
32980804--32981475	354	1.9	354	80	5	793	24	29	26	19	1.99
32981204--32981551	185	1.9	183	82	3	439	23	29	27	19	1.99
32981365--32981804	159	2.8	158	75	6	415	23	29	27	18	1.98
32981842--32981894	26	2.0	26	92	0	88	24	18	28	28	1.98
32987330--32987382	26	2.0	26	89	7	81	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32987355--32987789	159	2.7	157	83	5	507	23	30	28	18	1.98
32987832--32987884	26	2.0	26	85	7	72	26	16	26	30	1.97
32988728--32988780	26	2.0	26	88	0	79	28	20	22	28	1.99
32988544--32988891	184	1.9	185	83	1	457	25	28	25	21	1.99
32989094--32989144	26	2.0	26	92	7	86	29	19	23	27	1.98
32989276--32989328	26	2.0	26	88	0	79	24	16	30	28	1.97
32989808--32989838	12	2.6	12	100	0	62	32	19	29	19	1.96
32990010--32990062	26	2.0	26	85	7	72	30	18	20	30	1.97
32990352--32990407	26	2.2	26	87	6	78	30	14	23	32	1.94
32990544--32990872	158	2.1	158	92	0	550	24	32	24	18	1.97
32990544--32990943	158	2.5	158	87	1	525	25	31	25	17	1.97
32990990--32991040	26	2.0	26	88	0	75	31	15	23	29	1.95
32991358--32991410	26	2.0	26	89	7	81	28	18	24	28	1.98
32991542--32991593	25	2.0	26	88	3	79	26	19	25	28	1.98
32991778--32992220	159	2.8	157	75	6	401	24	29	25	19	1.99
32992619--32992671	26	2.0	26	89	7	81	24	18	28	28	1.98
32993878--32993930	26	2.0	26	92	7	90	28	20	24	26	1.99
32994381--32994431	26	2.0	26	84	7	68	27	15	27	29	1.96
32995865--32995917	26	2.0	26	92	7	90	28	20	24	26	1.99
32996771--32996823	26	2.0	26	96	0	97	26	20	24	28	1.99
32997271--32997323	26	2.0	26	85	7	72	30	16	24	28	1.97
32997813--32998227	159	2.6	157	76	7	403	24	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32998846--32998898	26	2.0	26	92	0	88	24	18	28	28	1.98
33000477--33000529	26	2.0	26	92	7	90	28	20	24	26	1.99
32998884--33001620	895	3.1	890	89	1	4133	26	24	23	25	2.00
33002118--33002170	26	2.0	26	89	7	81	30	16	24	28	1.97
33002143--33002560	159	2.6	159	80	3	466	25	29	26	17	1.98
33002622--33002671	26	1.9	26	87	0	73	30	20	28	22	1.98
33003208--33003692	158	3.1	158	75	5	379	23	30	25	20	1.98
33003666--33003718	26	2.0	26	92	7	90	26	20	26	26	1.99
33005506--33005558	26	2.0	26	92	7	90	30	16	22	30	1.96
33005531--33005903	159	2.3	159	79	5	378	24	28	26	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402