genome.fa.s1.2.7.7.80.10.50.1000.383.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  383  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34801215--34801647	160	2.7	158	76	4	397	24	29	27	19	1.98
34802403--34802455	26	2.0	26	89	7	81	28	22	22	26	1.99
34803272--34803324	26	2.0	26	89	7	81	28	15	26	30	1.96
34803113--34803481	184	2.0	185	84	1	481	24	28	26	20	1.99
34803297--34804181	159	5.6	161	76	5	703	21	28	29	20	1.98
34803297--34804151	317	2.7	313	82	3	924	21	28	29	20	1.98
34804248--34804300	26	2.0	26	92	0	88	24	18	28	28	1.98
34804593--34804642	26	1.9	26	91	0	82	26	20	28	26	1.99
34804051--34804824	345	2.2	345	84	0	1003	24	27	27	20	1.99
34805129--34805181	26	2.0	26	92	0	88	24	18	28	28	1.98
34805847--34805899	26	2.0	26	85	0	70	28	20	20	30	1.98
34805872--34806372	156	3.2	156	75	4	405	24	29	25	19	1.98
34807223--34807275	26	2.0	26	89	7	81	30	20	22	26	1.98
34807258--34807548	159	1.8	159	80	4	345	24	30	27	17	1.97
34807724--34807779	26	2.2	26	93	0	94	25	17	26	30	1.97
34808768--34808820	26	2.0	26	92	0	88	24	18	28	28	1.98
34809945--34809997	26	2.0	26	85	0	70	28	22	24	24	2.00
34813265--34813317	26	2.0	26	92	0	88	26	26	22	24	2.00
34813633--34813685	26	2.0	26	92	0	88	26	26	20	26	1.99
34813254--34813950	368	1.9	368	85	1	966	20	28	29	21	1.98
34813880--34814172	158	1.8	159	81	2	365	22	29	26	21	1.99
34813916--34814488	159	3.6	158	73	7	437	21	28	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34813798--34814489	317	2.1	316	82	5	805	22	27	27	22	1.99
34814462--34814514	26	2.0	26	89	7	81	26	24	18	30	1.98
34815544--34815596	26	2.0	26	92	0	88	32	28	15	24	1.95
34815609--34815950	159	2.2	158	83	2	427	18	27	32	21	1.97
34815777--34816768	498	2.0	497	82	3	1201	20	26	29	24	1.99
34816376--34817272	487	1.8	490	82	5	1166	20	25	28	24	1.99
34817275--34817571	157	1.9	157	79	10	338	16	24	34	24	1.95
34817556--34817605	26	1.9	26	84	8	66	36	24	8	32	1.84
34818592--34818644	26	2.0	26	92	7	90	26	24	20	28	1.99
34819325--34819377	26	2.0	26	92	0	88	28	28	18	24	1.98
34825179--34825231	26	2.0	26	89	7	81	26	22	20	30	1.98
34825283--34825580	159	1.9	157	86	4	429	18	27	30	23	1.97
34826587--34826639	26	2.0	26	92	7	90	26	24	20	28	1.99
34826954--34827006	26	2.0	26	100	0	106	26	30	20	22	1.98
34826202--34827311	355	3.2	343	76	8	1045	21	28	27	22	1.99
34826980--34827480	159	3.2	157	77	3	513	20	27	27	23	1.99
34827454--34827506	26	2.0	26	88	0	79	24	22	20	32	1.98
34828172--34828224	26	2.0	26	92	7	90	26	26	20	26	1.99
34829212--34829264	26	2.0	26	92	0	88	26	26	20	26	1.99
34829580--34829632	26	2.0	26	85	7	72	30	26	16	26	1.97
34829901--34829951	26	2.0	26	92	0	84	27	31	15	25	1.96
34830268--34830320	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34829679--34830498	368	2.3	356	84	3	996	20	26	29	23	1.99
34830778--34830830	26	2.0	26	92	7	90	26	22	20	30	1.98
34831493--34831544	26	2.0	26	92	0	86	26	23	19	30	1.98
34831847--34831899	26	2.0	26	92	0	88	26	26	20	26	1.99
34831873--34832377	158	3.2	158	76	5	347	21	26	28	23	1.99
34833348--34833402	26	2.1	27	93	3	94	21	29	20	29	1.98
34833517--34833811	157	1.9	158	80	3	344	22	26	27	23	1.99
34834510--34834576	26	2.6	26	87	0	98	29	26	17	25	1.98
34834768--34834821	23	2.3	24	93	6	101	18	22	48	11	1.79
34834925--34834977	26	2.0	26	92	0	88	28	28	18	24	1.98
34835090--34835456	158	2.3	159	79	6	411	19	25	29	26	1.98
34836210--34836262	26	2.0	26	92	0	88	26	20	28	24	1.99
34837438--34837490	26	2.0	26	92	0	88	30	20	22	26	1.98
34838600--34838653	26	2.1	26	93	6	92	27	20	25	25	1.99
34838246--34838915	355	1.9	356	81	4	832	24	28	25	20	1.99
34838626--34839032	160	2.6	158	77	7	376	26	28	26	19	1.99
34839176--34839486	170	1.8	169	83	2	417	22	27	27	21	1.99
34839767--34839810	21	2.1	21	91	0	70	9	43	20	27	1.82
34840326--34840378	26	2.0	26	92	0	88	24	18	28	28	1.98
34840511--34840845	159	2.1	158	87	1	483	20	33	29	16	1.94
34840852--34840904	26	2.0	26	88	0	79	26	22	26	24	2.00
34841574--34841652	26	3.0	26	85	3	88	29	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34843148--34843200	26	2.0	26	96	0	97	24	20	28	26	1.99
34843824--34843876	26	2.0	26	89	7	81	26	18	26	28	1.98
34845069--34845494	160	2.7	157	74	9	387	25	30	27	16	1.97
34847398--34847450	26	2.0	26	89	7	81	26	18	26	28	1.98
34847766--34847818	26	2.0	26	86	13	74	28	16	26	28	1.97
34847607--34847977	184	2.0	185	87	1	530	24	29	26	19	1.99
34847791--34848768	159	6.2	159	78	5	860	21	29	28	20	1.98
34847791--34848670	317	2.8	318	83	3	1076	21	29	29	19	1.98
34848742--34848794	26	2.0	26	92	0	88	24	18	28	28	1.98
34848546--34849387	345	2.4	345	84	1	1069	23	28	28	20	1.99
34849601--34849653	26	2.0	26	85	0	70	26	16	26	30	1.97
34850319--34850371	26	2.0	26	88	0	79	26	20	20	32	1.98
34850342--34850792	156	2.9	157	77	3	485	24	30	26	19	1.98
34850817--34850869	26	2.0	26	88	0	79	26	18	28	26	1.98
34851994--34852046	26	2.0	26	89	7	81	30	20	22	26	1.98
34852019--34852465	159	2.8	158	77	6	438	23	32	27	17	1.97
34852496--34852551	26	2.2	26	86	0	76	25	17	25	32	1.97
34853541--34853593	26	2.0	26	96	0	97	24	20	28	26	1.99
34854720--34854772	26	2.0	26	88	0	79	22	22	26	28	1.99
34855442--34855494	26	2.0	26	89	7	81	30	18	24	26	1.98
34855627--34855971	158	2.2	158	80	5	372	23	31	27	18	1.97
34855945--34855997	26	2.0	26	85	0	70	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855786--34856339	184	3.0	184	82	3	693	22	29	27	20	1.98
34855441--34856756	685	1.9	686	82	2	1649	23	28	27	20	1.99
34856154--34856570	159	2.6	158	75	6	396	23	28	27	19	1.98
34857350--34857850	159	3.2	157	81	3	587	23	30	26	19	1.98
34857824--34857876	26	2.0	26	89	7	81	26	18	28	26	1.98
34857665--34858034	184	2.0	184	85	2	501	23	29	26	20	1.99
34857849--34858282	159	2.7	156	78	5	442	23	31	28	17	1.97
34857352--34858427	501	2.2	497	83	3	1329	23	30	27	18	1.98
34858706--34858758	26	2.0	26	89	7	81	28	18	24	28	1.98
34859386--34859438	26	2.0	26	89	7	81	30	18	22	28	1.98
34858501--34859813	681	1.9	682	83	2	1683	23	29	26	20	1.99
34859412--34859912	158	3.2	156	76	8	494	23	28	26	21	1.99
34859886--34859938	26	2.0	26	92	0	88	26	20	26	26	1.99
34860507--34860535	11	2.6	11	100	0	58	20	24	27	27	1.99
34860848--34860903	26	2.2	26	90	6	87	28	17	23	30	1.97
34861349--34861401	26	2.0	26	92	0	88	24	18	26	30	1.98
34862570--34862622	26	2.0	26	85	0	70	26	15	28	30	1.96
34862939--34862989	26	2.0	26	88	0	75	29	13	27	29	1.94
34862384--34863277	368	2.4	366	79	4	1001	23	27	27	21	1.99
34863316--34863698	158	2.4	159	78	3	353	26	27	26	20	1.99
34864735--34864787	26	2.0	26	96	0	97	24	20	28	26	1.99
34864760--34865128	170	2.2	170	80	8	401	21	28	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34866337--34866389	26	2.0	26	89	7	81	28	20	22	28	1.99
34866362--34866862	158	3.2	157	78	6	465	23	29	27	19	1.98
34866838--34866888	26	2.0	26	96	0	93	27	19	25	27	1.99
34866876--34867198	171	1.9	171	82	6	404	21	30	28	19	1.97
34866864--34867231	171	2.2	171	80	8	401	21	28	28	21	1.98
34869963--34870008	24	1.9	24	100	0	92	36	13	19	30	1.90
34872377--34872896	196	2.6	195	84	2	657	24	27	26	21	1.99
34872770--34873266	158	3.1	158	75	9	372	22	31	26	19	1.98
34873246--34873298	26	2.0	26	88	0	79	26	18	26	28	1.98
34873933--34873983	26	2.0	26	88	7	77	27	21	23	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402