genome.fa.s1.2.7.7.80.10.50.1000.334.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  334  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30821940--30822282	157	2.2	158	80	6	372	20	24	30	25	1.99
30822256--30822308	26	2.0	26	82	7	63	24	20	22	32	1.98
30822561--30822589	12	2.3	13	94	5	51	13	34	27	24	1.93
30822871--30823429	159	3.5	158	74	7	475	18	28	30	22	1.98
30822947--30823402	159	2.9	158	75	5	479	19	28	30	21	1.98
30823548--30823597	26	1.9	26	95	0	91	24	28	22	26	1.99
30823434--30824257	343	2.4	342	85	2	1082	20	28	28	22	1.98
30823920--30824292	159	2.4	156	75	7	374	21	27	29	22	1.99
30823969--30824729	159	4.8	156	74	8	513	19	27	28	23	1.99
30825481--30825942	159	2.9	158	75	8	407	19	26	30	23	1.98
30825440--30825941	158	3.2	155	74	9	451	20	26	29	23	1.99
30826243--30826295	26	2.0	26	85	7	72	32	28	15	24	1.95
30826333--30826769	159	2.8	159	79	4	427	18	28	29	23	1.98
30826277--30826770	158	3.1	157	76	6	476	20	27	29	22	1.98
30826744--30826796	26	2.0	26	85	7	72	24	22	22	30	1.99
30826586--30826955	184	2.0	184	84	0	479	22	26	27	24	2.00
30827459--30827509	26	2.0	26	96	0	93	27	25	19	27	1.99
30827086--30827826	345	2.2	343	87	1	1036	19	27	29	23	1.99
30827549--30827986	159	2.8	158	79	6	456	19	27	29	23	1.98
30827485--30827984	158	3.2	157	78	6	508	20	26	29	24	1.99
30827675--30829368	343	4.9	338	78	6	1375	20	27	28	22	1.99
30828313--30828366	27	2.0	27	89	3	83	25	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30828160--30828512	185	1.9	186	81	4	426	21	28	28	22	1.99
30827089--30828683	857	1.9	846	83	3	2106	20	27	29	23	1.99
30828657--30828709	26	2.0	26	92	0	88	24	30	20	24	1.99
30827886--30829368	687	2.1	687	82	3	1785	20	27	28	23	1.99
30829131--30829528	158	2.5	159	81	4	464	18	28	29	24	1.98
30829032--30829526	159	3.1	158	78	4	507	18	27	29	24	1.98
30830299--30830760	158	2.9	161	78	5	467	19	27	29	22	1.98
30830734--30830800	25	2.6	26	95	4	127	26	22	20	29	1.99
30833210--30833616	158	2.6	157	72	6	365	20	27	27	24	1.99
30833590--30833642	26	2.0	26	85	7	72	28	22	18	30	1.98
30833970--30834355	150	2.5	156	73	11	387	19	27	30	22	1.98
30834501--30835001	158	3.2	157	68	8	397	21	26	27	24	1.99
30834975--30835027	26	2.0	26	89	7	81	28	24	18	28	1.98
30835676--30835728	26	2.0	26	92	7	90	30	24	16	28	1.97
30835846--30835898	26	2.0	26	92	0	88	28	26	20	24	1.99
30836297--30836349	26	2.0	26	89	7	81	26	20	20	32	1.98
30836850--30836902	26	2.0	26	92	7	90	26	24	20	28	1.99
30837417--30837469	26	2.0	26	92	7	90	30	24	16	28	1.97
30837586--30837638	26	2.0	26	92	0	88	28	24	20	26	1.99
30838933--30838985	26	2.0	26	88	0	79	28	28	16	26	1.97
30839432--30839484	26	2.0	26	85	7	72	28	22	18	30	1.98
30839534--30840047	158	3.3	157	79	4	520	19	27	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30840064--30840116	26	2.0	26	86	13	74	30	24	16	28	1.97
30841131--30841183	26	2.0	26	85	7	72	28	26	20	24	1.99
30841853--30841906	26	2.0	27	92	3	92	25	27	20	25	1.99
30841920--30842216	158	1.9	157	86	6	431	17	28	32	21	1.96
30842195--30842247	26	2.0	26	89	7	81	28	20	20	30	1.98
30842317--30842349	11	3.0	11	90	0	57	21	27	33	18	1.96
30843110--30843162	26	2.0	26	89	7	81	32	18	18	30	1.96
30842896--30843332	185	2.3	188	80	7	458	20	26	28	24	1.99
30843491--30843542	26	2.0	26	88	0	77	32	25	15	26	1.95
30843991--30844043	26	2.0	26	89	7	81	28	24	18	28	1.98
30844200--30844250	26	2.0	26	96	0	93	29	29	15	25	1.96
30844542--30844620	26	3.0	26	94	3	133	29	24	17	29	1.97
30845303--30845354	26	2.0	26	85	7	70	26	25	17	30	1.97
30845486--30845741	129	2.0	129	85	0	341	18	29	29	22	1.97
30845907--30845959	26	2.0	26	92	0	88	28	28	18	24	1.98
30847475--30847526	26	2.0	26	84	0	68	32	26	11	28	1.91
30848144--30848196	26	2.0	26	85	0	70	30	24	18	26	1.98
30848910--30848962	26	2.0	26	89	7	81	28	24	18	28	1.98
30849110--30849159	26	1.9	26	95	0	91	24	26	22	28	1.99
30849463--30849514	26	2.0	26	85	3	70	26	26	19	26	1.99
30850550--30850858	159	2.0	157	83	1	393	16	28	32	22	1.95
30850831--30850883	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30851921--30851973	26	2.0	26	85	7	72	26	24	22	26	2.00
30852643--30852693	26	2.0	26	88	7	77	27	27	17	27	1.98
30852847--30853152	159	1.9	159	84	2	409	17	26	31	23	1.97
30853126--30853178	26	2.0	26	85	7	72	24	22	20	32	1.98
30859771--30859822	26	2.0	26	84	0	68	30	30	15	23	1.95
30859850--30860299	159	2.8	159	79	5	464	19	27	30	22	1.98
30860271--30860323	26	2.0	26	85	7	72	30	24	16	28	1.97
30860640--30860692	26	2.0	26	85	7	72	32	28	15	24	1.95
30860220--30860874	356	1.8	362	81	6	835	19	27	30	23	1.98
30860774--30860994	110	2.0	110	90	0	343	15	27	33	23	1.95
30861973--30862025	26	2.0	26	85	0	70	28	24	18	28	1.98
30862206--30862236	12	2.6	12	94	0	53	25	19	41	12	1.87
30862353--30862696	158	2.2	159	80	5	374	20	24	30	25	1.99
30862670--30862722	26	2.0	26	82	7	63	24	20	22	32	1.98
30862975--30863004	13	2.3	13	100	0	60	13	33	30	23	1.93
30863054--30863104	26	2.0	26	92	0	84	29	27	17	25	1.98
30863362--30863816	159	2.9	158	75	5	459	19	27	30	22	1.98
30863215--30863751	159	3.4	158	76	4	517	18	26	31	23	1.98
30863963--30864012	26	1.9	26	95	0	91	24	28	22	26	1.99
30863849--30864672	343	2.4	341	85	2	1069	19	28	29	22	1.98
30864379--30865139	159	4.8	158	75	5	640	19	27	29	23	1.98
30864428--30865139	317	2.2	318	82	2	874	19	27	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30865572--30865629	26	2.2	26	84	3	71	60	5	6	27	1.44
30865855--30866356	158	3.2	156	74	8	460	20	26	29	23	1.99
30866658--30866710	26	2.0	26	92	0	88	28	30	16	24	1.97
30867158--30867210	26	2.0	26	85	7	72	24	20	24	30	1.99
30867002--30867369	184	2.0	182	82	2	441	22	26	27	24	2.00
30867874--30867926	26	2.0	26	85	10	72	26	26	20	26	1.99
30868711--30868763	26	2.0	26	92	0	88	26	26	20	26	1.99
30869054--30869106	26	2.0	26	92	0	88	24	30	20	24	1.99
30868535--30869651	343	3.3	343	81	6	1176	21	27	28	22	1.99
30870725--30871186	158	2.9	161	78	5	485	19	27	29	23	1.98
30871160--30871227	26	2.6	26	100	0	136	26	22	20	30	1.98
30874041--30874094	26	2.0	27	92	3	92	27	20	25	25	1.99
30874756--30874808	26	2.0	26	82	13	65	28	18	24	28	1.98
30874781--30875125	160	2.2	159	78	7	353	25	28	26	20	1.99
30875099--30875151	26	2.0	26	89	7	81	28	20	24	26	1.99
30875343--30875638	159	1.9	159	83	2	389	22	29	26	20	1.99
30875337--30875696	159	2.3	159	79	4	368	24	29	25	20	1.99
30875810--30875862	26	2.0	26	88	0	79	26	18	26	28	1.98
30876533--30876584	26	2.0	26	88	3	79	30	21	19	28	1.97
30876569--30877056	159	3.1	158	77	4	554	23	30	26	19	1.98
30877231--30877730	156	3.2	154	83	6	508	23	28	26	21	1.99
30877704--30877756	26	2.0	26	86	13	74	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30878335--30878367	11	3.0	11	90	0	57	21	36	24	18	1.95
30878437--30878489	26	2.0	26	89	7	81	28	18	24	28	1.98
30878938--30878990	26	2.0	26	96	0	97	24	16	28	30	1.97
30878753--30880462	355	5.0	350	77	8	1483	23	29	26	20	1.99
30879611--30879660	26	1.9	26	88	8	75	28	20	24	28	1.99
30879954--30880005	26	2.0	26	84	0	68	26	15	26	30	1.96
30880149--30880517	184	2.0	184	87	0	522	23	28	26	20	1.99
30880624--30881280	355	1.8	356	86	2	955	22	30	27	18	1.97
30881164--30881216	26	2.0	26	96	0	97	24	20	28	26	1.99
30887953--30888005	26	2.0	26	88	0	79	22	22	30	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402