Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  21  of  402  ( 48166 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4821053--4821148
43
2.4
38
74
15
102
56
0
4
39
1.19
4821063--4821151
43
2.1
43
95
0
160
59
0
3
37
1.14
4821284--4821328
22
2.0
23
86
4
65
35
2
11
51
1.50
4821368--4821415
23
2.1
23
84
7
62
47
6
0
45
1.27
4821829--4821882
25
2.2
25
82
0
63
51
1
0
46
1.11
4821817--4821912
37
2.6
36
80
11
97
48
1
0
50
1.07
4821939--4821970
10
3.1
11
86
13
50
25
6
0
68
1.12
4821953--4822068
13
9.5
13
68
14
52
26
3
3
66
1.24
4821959--4822063
16
6.9
15
68
24
51
27
3
3
64
1.28
4822024--4822069
13
3.5
14
77
11
53
26
2
0
71
0.97
4822072--4822151
28
3.0
27
75
8
74
48
0
1
50
1.08
4822253--4822295
20
2.3
18
80
11
50
48
0
0
51
1.00
4826412--4826506
15
5.6
17
70
20
67
49
1
0
49
1.07
4826412--4826495
16
5.1
16
72
20
59
47
1
0
51
1.08
4826410--4826494
34
2.7
32
82
15
97
48
1
0
50
1.08
4826541--4826670
11
12.5
11
66
19
64
45
0
0
53
1.05
4826551--4826664
8
14.4
8
67
21
62
44
0
0
54
1.06
4826522--4826670
38
3.9
37
74
21
130
42
1
0
55
1.13
4844304--4844338
18
1.9
18
94
0
61
37
0
0
62
0.95
4844306--4844347
18
2.4
18
80
11
52
38
0
2
59
1.10
4847148--4847190
22
2.0
22
86
4
61
39
4
13
41
1.66
4850013--4850068
22
2.5
23
82
8
71
35
0
1
62
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4850025--4850071
10
4.4
11
87
12
71
34
0
2
63
1.06
4855593--4855651
29
2.0
30
87
9
86
40
0
0
59
0.97
4867383--4867407
13
1.9
13
100
0
50
32
8
32
28
1.86
4867874--4868444
284
2.0
284
86
2
797
31
19
18
29
1.96
4872579--4872603
13
1.9
13
100
0
50
28
32
8
32
1.86
4872612--4872646
18
1.9
18
88
0
52
51
8
14
25
1.70
4877367--4877476
52
2.1
52
91
0
175
37
13
19
30
1.90
4877682--4877748
19
3.6
18
77
15
64
49
0
0
50
1.00
4877680--4877748
27
2.4
27
83
7
75
50
0
0
49
1.00
4879709--4879772
31
2.1
31
100
0
128
39
9
18
32
1.83
4882388--4882430
21
2.0
22
86
4
61
34
0
2
62
1.08
4882413--4882482
20
3.5
20
73
15
63
32
0
5
61
1.20
4882418--4882493
28
2.5
31
79
16
79
34
0
5
60
1.19
4885350--4885558
103
2.0
103
90
1
330
28
14
28
28
1.95
4895741--4895775
18
1.9
19
88
11
56
62
5
17
14
1.49
4895741--4895781
18
2.2
19
83
12
50
60
9
14
14
1.57
4907220--4907247
2
14.0
2
100
0
56
50
0
0
50
1.00
4907245--4907288
4
11.5
4
90
9
74
27
0
22
50
1.50
4907290--4907314
4
6.2
4
100
0
50
52
24
0
24
1.48
4910030--4910166
68
2.0
68
94
0
238
43
14
16
25
1.85
4916388--4916442
28
2.0
28
92
0
92
43
10
23
21
1.84
4916483--4916680
108
1.8
108
80
8
242
45
10
11
32
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4918668--4918767
51
2.0
51
88
4
148
52
5
15
28
1.63
4919660--4919762
52
2.0
52
90
0
161
47
6
17
28
1.73
4921707--4921789
6
13.5
6
75
12
62
22
1
1
74
0.95
4921697--4921792
22
4.1
22
78
15
88
22
1
1
75
0.94
4921732--4921788
3
18.7
3
76
16
55
29
1
0
68
1.00
4921735--4921791
18
3.2
18
85
11
82
29
1
0
68
1.00
4921697--4921797
11
9.0
11
74
15
66
22
0
1
74
0.98
4921697--4921800
9
12.9
8
72
22
67
23
0
1
74
0.98
4922610--4922638
14
2.0
15
93
6
51
75
0
3
20
0.94
4922621--4922974
196
1.8
196
85
7
504
47
7
9
35
1.64
4924318--4924350
17
1.9
17
88
11
50
30
21
3
45
1.67
4930458--4930505
22
2.2
22
88
7
71
35
10
18
35
1.85
4931081--4931190
44
2.6
44
82
5
129
24
15
18
41
1.89
4931244--4931394
44
3.4
44
83
2
187
27
13
17
42
1.86
4931574--4931681
17
6.4
17
66
28
54
21
1
2
74
1.05
4931578--4931678
10
10.3
10
72
18
61
21
1
2
73
1.07
4931575--4931681
14
7.4
14
73
9
54
20
1
2
74
1.03
4932509--4932537
14
2.0
15
93
6
51
75
0
3
20
0.94
4937110--4937157
20
2.4
21
79
6
55
52
2
12
33
1.51
4939522--4939574
16
3.4
16
79
10
56
39
5
3
50
1.44
4942801--4942826
2
13.0
2
100
0
52
50
0
0
50
1.00
4943501--4943548
22
2.1
22
84
3
60
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4950629--4950657
2
14.5
2
100
0
58
51
0
0
48
1.00
4953529--4953584
24
2.4
23
76
5
58
58
16
12
12
1.62
4956434--4956466
17
1.9
17
88
11
50
57
9
18
15
1.63
4962342--4962390
22
2.3
21
83
13
64
55
4
0
40
1.19
4964214--4964254
3
13.7
3
100
0
82
31
0
0
68
0.90
4979245--4979297
13
4.3
12
79
11
54
33
3
1
60
1.26
4979243--4979305
19
3.3
19
78
8
56
36
3
1
58
1.23
4985653--4985723
37
1.9
37
83
11
92
52
1
0
46
1.09
4987356--4987395
21
1.9
21
84
0
53
67
0
0
32
0.91
4993920--4993946
11
2.5
11
100
0
54
25
18
29
25
1.98
4995798--4995838
22
2.0
21
85
9
57
68
0
0
31
0.90
4996106--4996141
2
18.0
2
100
0
72
50
0
0
50
1.00
4999216--4999253
13
2.9
13
88
7
51
76
0
2
21
0.91
5001103--5001135
2
16.5
2
93
0
57
51
48
0
0
1.00
5003511--5003551
22
1.9
22
90
5
66
17
4
0
78
0.93
5003914--5003954
21
2.0
21
85
0
55
43
7
0
48
1.30
5004014--5004080
5
12.8
5
78
9
53
32
0
0
67
0.91
5004008--5004061
27
2.0
27
92
7
92
37
0
0
62
0.95
5004014--5004082
15
4.7
15
73
12
63
33
0
0
66
0.92
5004011--5004082
37
2.0
36
88
2
108
34
0
0
65
0.93
5009725--5009759
17
2.1
17
100
0
70
40
11
31
17
1.85
5010432--5010485
21
2.6
20
88
8
81
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5011814--5011860
15
3.0
15
72
22
51
10
19
0
70
1.16
5013007--5013036
10
3.1
10
95
4
53
63
0
0
36
0.95
5016408--5016465
22
2.6
22
100
0
116
43
8
15
32
1.77
5024633--5024674
18
2.4
18
88
11
61
66
4
0
28
1.12
5024669--5024706
15
2.4
17
86
8
53
60
0
0
39
0.97
5028195--5028238
23
1.9
23
81
9
54
47
9
0
43
1.35
5034960--5035001
22
1.9
23
85
9
61
61
2
4
30
1.29
5037836--5038412
253
2.3
254
84
2
725
38
8
12
41
1.73
5048376--5048624
135
1.8
135
84
1
338
28
15
15
40
1.88
5057646--5057671
2
13.0
2
100
0
52
50
0
0
50
1.00
5060497--5060540
15
2.9
15
82
0
52
40
18
6
34
1.77
5061060--5061091
14
2.3
14
94
0
55
25
0
9
65
1.22
5062111--5062154
22
2.0
23
90
4
72
9
9
13
68
1.40
5066408--5066873
233
2.0
233
98
0
905
21
20
25
32
1.98
5071337--5071408
22
3.2
22
79
11
74
48
2
5
43
1.40
5071794--5071846
20
2.5
22
84
9
65
33
1
7
56
1.38
5072171--5072223
26
2.0
26
92
0
88
47
0
0
52
1.00
5073363--5073468
18
5.6
18
72
24
83
56
0
1
40
1.16
5073368--5073459
15
5.9
15
74
18
73
57
0
2
40
1.11
5073374--5073471
23
4.4
20
75
15
79
56
1
2
40
1.18
5074587--5074631
17
2.6
17
89
10
65
35
4
2
57
1.31
5074809--5074874
30
2.2
30
86
2
87
51
6
3
39
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5075134--5075251
32
3.7
31
76
11
96
40
3
5
50
1.44
5082480--5082516
2
18.5
2
88
0
56
48
2
0
48
1.15
5082470--5082513
12
3.7
12
81
0
52
47
4
0
47
1.22
5098980--5099005
5
5.2
5
100
0
52
38
0
0
61
0.96
5100295--5100335
6
6.8
6
91
8
66
0
34
0
65
0.93
5105645--5105690
23
2.0
22
84
12
58
26
0
8
65
1.21
5110758--5110809
19
2.7
19
82
14
54
75
3
17
3
1.11
5111091--5111125
17
2.1
17
100
0
70
34
17
11
37
1.85
5119345--5119412
35
1.9
35
87
0
100
45
27
2
23
1.67
5120664--5121024
187
1.9
186
92
0
605
35
13
19
32
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402