genome.fa.s1.2.7.7.80.10.50.1000.386.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  386  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35012958--35013009	26	2.0	26	85	3	70	25	13	28	32	1.93
35013677--35013729	26	2.0	26	89	7	81	28	18	24	28	1.98
35016786--35016838	26	2.0	26	89	7	81	30	18	22	28	1.98
35017299--35017368	26	2.7	26	86	0	95	25	20	25	28	1.99
35018360--35018410	25	2.0	26	92	3	86	29	17	25	27	1.98
35018847--35018899	26	2.0	26	88	0	79	26	15	26	32	1.95
35020186--35020216	12	2.6	12	94	0	53	12	41	19	25	1.87
35020409--35020486	26	3.0	26	88	3	113	29	16	25	28	1.97
35020459--35020862	159	2.6	154	75	10	365	26	29	25	17	1.97
35020931--35020983	26	2.0	26	92	0	88	24	18	28	28	1.98
35021800--35021852	26	2.0	26	85	0	70	24	22	28	24	2.00
35022532--35022584	26	2.0	26	89	7	81	26	22	24	26	2.00
35022557--35023083	158	3.3	158	76	4	447	23	28	27	20	1.99
35023251--35023740	158	3.1	157	73	7	449	24	29	26	19	1.98
35023716--35023766	26	2.0	26	84	0	66	29	13	25	31	1.94
35024081--35024133	26	2.0	26	89	7	81	28	18	24	28	1.98
35024179--35024600	158	2.7	158	76	9	405	23	30	26	20	1.98
35024107--35024608	158	3.2	158	76	8	402	24	29	26	20	1.99
35024584--35024634	26	2.0	26	84	0	66	29	17	27	25	1.98
35024740--35024769	12	2.5	12	94	0	51	10	43	26	20	1.83
35025427--35025479	26	2.0	26	82	13	65	30	16	22	30	1.96
35025453--35026116	159	4.2	157	76	8	549	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35026453--35026505	26	2.0	26	85	7	72	30	18	22	28	1.98
35026295--35026662	183	2.0	183	85	2	497	23	27	28	20	1.99
35026478--35026942	159	2.9	157	78	5	452	22	31	28	18	1.97
35028140--35028639	159	3.2	157	74	7	453	23	31	26	19	1.98
35028615--35028665	26	2.0	26	92	0	84	27	13	29	29	1.94
35030064--35030134	26	2.7	26	97	0	133	29	19	18	32	1.96
35030548--35030599	26	2.0	26	88	3	79	26	23	23	26	2.00
35031700--35031751	25	2.0	26	96	3	97	25	21	26	26	1.99
35032054--35032104	26	2.0	26	92	0	84	27	17	27	27	1.98
35036320--35036371	26	2.0	25	89	10	79	28	21	25	25	1.99
35037057--35037584	159	3.3	159	76	4	503	24	28	26	20	1.99
35038746--35039107	184	2.0	184	86	2	512	24	27	25	21	1.99
35039383--35039435	26	2.0	26	92	0	88	24	18	28	28	1.98
35040537--35040589	26	2.0	26	88	0	79	24	16	28	30	1.97
35040181--35040932	197	4.0	187	79	12	666	22	28	28	20	1.98
35040496--35040891	196	2.0	195	85	4	530	21	28	28	21	1.99
35040757--35041259	159	3.2	158	73	6	462	23	29	27	19	1.98
35041233--35041285	26	2.0	26	92	0	88	24	18	28	28	1.98
35041611--35041664	26	2.1	26	93	6	92	29	20	24	25	1.99
35042081--35042133	26	2.0	26	89	7	81	24	15	30	30	1.95
35042716--35042756	11	3.7	11	80	0	55	12	21	36	29	1.90
35042826--35042878	26	2.0	26	88	0	79	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35043499--35043807	159	1.9	159	84	2	406	25	30	26	18	1.98
35043854--35043906	26	2.0	26	88	0	79	26	18	26	28	1.98
35044965--35045551	159	3.7	157	79	7	632	23	31	28	16	1.96
35044601--35046228	671	2.4	663	81	6	1756	22	30	27	19	1.98
35045761--35046613	159	5.4	158	73	5	639	22	29	27	20	1.98
35045769--35046610	316	2.7	315	81	3	888	22	29	27	19	1.98
35047252--35047995	158	4.6	157	71	9	423	24	28	26	20	1.99
35047252--35047985	316	2.3	320	80	6	806	24	28	26	20	1.99
35048262--35048315	26	2.1	26	93	6	92	29	20	24	25	1.99
35047895--35048413	196	2.6	196	79	4	580	24	28	26	19	1.99
35048288--35049036	159	4.7	158	77	5	703	23	30	28	18	1.97
35048289--35049045	316	2.4	316	85	2	1013	22	30	28	18	1.97
35048288--35049055	157	4.9	157	77	5	719	22	30	27	18	1.98
35049092--35049141	26	1.9	26	84	8	66	30	14	22	34	1.93
35049118--35049925	159	5.1	157	74	6	594	23	30	27	18	1.98
35048449--35049689	669	1.9	669	84	3	1676	24	29	27	19	1.98
35049118--35049933	316	2.6	317	82	4	921	23	30	27	18	1.98
35048092--35049987	828	2.3	828	77	5	1812	23	29	27	19	1.98
35049907--35049959	26	2.0	26	92	0	88	24	18	28	28	1.98
35050630--35051132	159	3.2	160	78	4	493	23	30	27	19	1.98
35051106--35051158	26	2.0	26	88	0	79	30	16	24	28	1.97
35051826--35051878	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35052327--35052379	26	2.0	26	88	0	79	26	18	26	28	1.98
35052708--35052760	26	2.0	26	92	0	88	28	18	22	30	1.98
35052734--35053236	159	3.2	159	78	5	509	21	29	28	20	1.98
35053210--35053262	26	2.0	26	92	0	88	24	22	28	24	2.00
35053968--35054311	157	2.2	156	79	5	361	24	29	27	19	1.98
35054409--35054461	26	2.0	26	92	0	88	26	18	28	26	1.98
35055045--35055097	26	2.0	26	89	7	81	30	20	22	26	1.98
35055070--35055490	158	2.7	158	78	2	443	24	29	28	17	1.97
35056151--35056967	316	2.6	316	81	2	953	24	30	26	18	1.98
35056152--35056967	158	5.2	157	74	5	640	24	30	26	18	1.98
35056941--35056993	26	2.0	26	96	0	97	24	20	28	26	1.99
35058368--35059131	342	2.2	342	83	2	958	22	29	28	20	1.98
35059027--35059079	26	2.0	26	96	0	97	24	20	28	26	1.99
35059743--35059794	26	2.0	26	88	3	79	23	19	28	28	1.98
35059427--35060137	342	2.1	341	83	3	892	24	29	26	19	1.99
35060085--35060162	26	3.0	26	92	1	122	29	17	24	28	1.98
35060282--35060593	171	1.8	171	83	5	416	26	30	24	18	1.98
35061213--35061989	158	4.9	158	75	6	617	22	29	27	19	1.98
35061255--35061989	317	2.3	314	82	3	888	22	29	27	19	1.98
35062911--35062963	26	2.0	26	85	0	70	28	22	26	22	1.99
35064458--35064510	26	2.0	26	85	0	70	28	22	26	22	1.99
35065505--35065557	26	2.0	26	85	7	72	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35066007--35066059	26	2.0	26	85	0	70	28	22	26	22	1.99
35066366--35066418	26	2.0	26	92	0	88	26	20	26	26	1.99
35067112--35067575	159	2.9	155	72	10	395	22	29	27	20	1.98
35069503--35069560	26	2.2	27	84	3	73	27	18	24	29	1.98
35070614--35070734	26	4.6	26	79	10	138	29	20	23	26	1.99
35073144--35073550	159	2.6	158	79	4	435	24	29	27	18	1.98
35073144--35073638	158	3.1	157	76	5	440	22	29	27	20	1.98
35073619--35073671	26	2.0	26	92	0	88	28	18	24	28	1.98
35073987--35074039	26	2.0	26	96	0	97	24	20	28	26	1.99
35080633--35080997	158	2.3	158	78	5	378	26	28	25	18	1.98
35080606--35081585	505	1.9	509	83	4	1260	24	28	26	20	1.99
35081614--35081665	26	2.0	26	88	0	77	28	19	25	26	1.98
35082619--35082671	26	2.0	26	88	0	79	26	18	26	28	1.98
35083000--35083052	26	2.0	26	86	13	74	30	13	22	33	1.92
35084222--35084274	26	2.0	26	89	7	81	28	18	22	30	1.98
35084247--35084627	159	2.4	158	77	3	390	23	28	27	20	1.99
35084406--35085210	336	2.4	336	84	2	941	22	28	28	20	1.99
35085426--35085478	26	2.0	26	92	7	90	26	20	26	26	1.99
35085929--35085982	26	2.1	26	89	0	81	25	22	27	24	2.00
35086563--35086612	26	1.9	26	95	0	91	36	18	20	26	1.95
35086558--35086624	26	2.5	26	85	2	89	31	20	19	28	1.97
35087130--35087182	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35088234--35088291	26	2.2	27	84	9	75	29	18	22	29	1.98
35088440--35088731	158	1.8	158	86	0	422	21	30	29	18	1.97
35088440--35088783	158	2.2	158	80	4	388	21	29	28	20	1.98
35088757--35088809	26	2.0	26	92	7	90	26	16	26	30	1.97
35089504--35089957	159	2.9	157	75	7	427	24	29	27	18	1.98
35090855--35090907	26	2.0	26	89	7	81	30	20	22	26	1.98
35090696--35091164	184	2.5	184	84	2	593	23	27	29	19	1.98
35091039--35091091	26	2.0	26	92	7	90	26	20	26	26	1.99
35091762--35091814	26	2.0	26	89	7	81	28	22	24	24	2.00
35091787--35092252	158	2.9	158	75	5	413	24	31	26	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402