genome.fa.s1.2.7.7.80.10.50.1000.398.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  398  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35958783--35958835	26	2.0	26	92	7	90	26	26	20	26	1.99
35958481--35958837	196	1.8	196	84	2	484	22	25	27	24	2.00
35959291--35959340	26	1.9	26	88	8	75	24	26	22	28	1.99
35960022--35960072	26	2.0	26	92	0	84	23	27	19	29	1.98
35960524--35960576	26	2.0	26	89	7	81	26	24	20	28	1.99
35960893--35960945	26	2.0	26	88	0	79	24	28	24	22	2.00
35961234--35961286	26	2.0	26	92	0	88	26	26	20	26	1.99
35961542--35961593	11	4.7	11	92	0	86	17	30	38	13	1.88
35961539--35961593	22	2.5	22	100	0	110	18	30	36	14	1.91
35962328--35962380	26	2.0	26	85	7	72	28	22	18	30	1.98
35962709--35962761	26	2.0	26	92	0	88	28	28	18	24	1.98
35962430--35963328	355	2.5	356	80	5	941	20	26	28	24	1.99
35963319--35963392	32	2.3	32	97	0	139	25	21	40	12	1.88
35964505--35964556	26	2.0	26	92	0	86	30	19	17	32	1.95
35964904--35964956	26	2.0	26	85	7	72	30	26	16	26	1.97
35965101--35965153	26	2.0	26	85	7	72	30	18	22	28	1.98
35965298--35965350	26	2.0	26	92	7	90	28	20	24	26	1.99
35971443--35971492	26	1.9	26	84	8	66	30	20	24	26	1.98
35972152--35972508	158	2.3	158	80	3	378	25	29	24	19	1.98
35972152--35972584	159	2.7	158	77	3	404	24	30	26	18	1.98
35973634--35974100	196	2.4	196	81	2	517	26	25	24	23	2.00
35974030--35974082	26	2.0	26	88	0	79	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35974189--35974947	159	5.0	146	73	10	477	23	29	28	18	1.97
35974189--35974947	304	2.5	304	82	3	880	23	29	28	18	1.97
35975742--35976231	158	3.1	156	74	7	470	25	27	26	20	1.99
35976208--35976266	26	2.4	25	72	8	66	27	15	28	28	1.96
35976778--35976830	26	2.0	26	85	7	72	28	20	24	26	1.99
35977271--35977322	25	2.0	25	85	10	70	26	21	25	26	1.99
35977674--35978038	159	2.3	158	77	5	378	25	29	24	20	1.99
35978150--35978202	26	2.0	26	89	7	81	26	18	26	28	1.98
35978518--35978570	26	2.0	26	88	0	79	26	18	26	28	1.98
35978703--35978752	26	1.9	26	92	8	84	30	22	24	24	1.99
35978359--35978972	185	3.3	184	80	4	643	24	27	26	21	1.99
35978885--35978936	26	2.0	26	85	3	70	26	19	25	28	1.98
35979071--35979374	159	1.9	158	81	3	369	24	30	28	16	1.97
35979411--35979461	26	2.0	26	88	7	77	31	17	19	31	1.95
35978728--35979754	527	2.0	523	80	3	1148	24	28	26	20	1.99
35980498--35980549	26	2.0	26	92	7	88	28	19	25	26	1.98
35980681--35980733	26	2.0	26	88	0	79	24	22	26	26	2.00
35979622--35981611	902	2.2	904	88	1	2954	26	23	24	25	2.00
35981404--35981456	26	2.0	26	92	7	90	28	20	24	26	1.99
35981904--35981956	26	2.0	26	92	7	90	30	16	22	30	1.96
35983030--35983393	184	2.0	182	83	2	451	23	28	26	20	1.99
35984029--35984081	26	2.0	26	89	7	81	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35983857--35984250	195	2.0	197	82	3	474	24	27	25	22	2.00
35984196--35984529	159	2.1	160	78	3	352	25	32	24	17	1.97
35984700--35984752	26	2.0	26	82	13	65	28	13	24	33	1.93
35985432--35985485	26	2.1	26	86	6	74	29	18	22	29	1.97
35987093--35987145	26	2.0	26	85	7	72	28	16	24	30	1.97
35987277--35987708	171	2.5	171	80	3	449	25	28	26	19	1.99
35987423--35987747	171	1.9	171	80	3	386	25	31	25	18	1.98
35987790--35987842	26	2.0	26	92	0	88	30	18	24	26	1.98
35989119--35989171	26	2.0	26	86	13	74	30	16	22	30	1.96
35990500--35990792	158	1.9	158	88	1	444	24	28	27	19	1.99
35990523--35991368	447	1.9	447	81	4	1046	25	28	26	19	1.98
35990970--35992617	159	10.2	157	71	11	691	22	29	27	20	1.98
35990969--35991819	317	2.7	316	81	5	907	23	29	26	19	1.99
35992593--35992643	26	2.0	26	88	0	75	27	17	27	27	1.98
35993748--35993799	26	2.0	26	88	0	77	28	15	26	28	1.96
35994501--35994936	159	2.8	155	77	3	431	25	31	26	16	1.96
35994974--35995052	26	3.0	26	94	0	140	25	18	27	27	1.98
35995902--35995961	26	2.4	26	83	5	79	26	18	26	28	1.98
35996962--35997014	26	2.0	26	86	13	74	28	16	24	30	1.97
35996988--35997487	158	3.2	156	71	6	418	23	30	27	19	1.98
35997461--35997513	26	2.0	26	92	7	90	26	20	26	26	1.99
35998498--35998550	26	2.0	26	96	0	97	20	20	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35998182--35999322	354	3.2	353	83	6	1292	21	29	28	19	1.98
35998852--35998904	26	2.0	26	96	0	97	24	20	28	26	1.99
35999220--35999275	26	2.2	26	93	0	94	25	19	25	30	1.98
36006151--36006203	26	2.0	26	86	13	74	26	16	26	30	1.97
36006494--36006546	26	2.0	26	92	0	88	24	18	28	28	1.98
36006861--36006913	26	2.0	26	85	7	72	30	18	22	28	1.98
36007363--36007413	26	2.0	26	92	7	86	27	19	27	25	1.99
36008108--36008538	159	2.7	159	74	3	413	24	29	27	18	1.98
36009306--36009355	26	1.9	26	88	8	75	30	16	22	32	1.95
36009966--36010017	26	2.0	26	92	7	88	26	23	26	23	2.00
36010697--36010749	26	2.0	26	82	7	63	32	18	22	26	1.97
36011225--36011272	25	1.9	25	83	8	62	25	18	27	29	1.98
36011058--36011803	356	2.1	354	83	5	936	23	29	27	19	1.98
36012048--36012100	26	2.0	26	85	7	72	30	18	22	28	1.98
36012073--36012522	159	2.9	157	74	5	388	23	29	27	19	1.98
36012572--36013005	171	2.4	182	74	12	428	21	29	29	18	1.97
36012654--36013048	171	2.3	171	82	2	506	20	30	29	19	1.97
36013403--36013455	26	2.0	26	92	0	88	26	20	26	26	1.99
36013822--36013874	26	2.0	26	85	0	70	24	16	26	32	1.97
36014546--36014598	26	2.0	26	89	7	81	28	18	24	28	1.98
36014571--36015070	158	3.2	157	72	8	397	25	29	26	18	1.98
36015402--36015454	26	2.0	26	89	7	81	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36014854--36015518	355	1.9	355	84	3	901	24	30	26	19	1.98
36016135--36016213	26	3.0	26	96	3	142	29	20	24	26	1.99
36016188--36016627	159	2.8	159	77	8	423	24	29	26	19	1.98
36017003--36017055	26	2.0	26	92	0	88	26	20	26	26	1.99
36017759--36018316	158	3.5	157	79	4	566	24	30	27	17	1.97
36018921--36018973	26	2.0	26	89	7	81	28	20	24	26	1.99
36019264--36019316	26	2.0	26	92	0	88	26	20	26	26	1.99
36020466--36020517	26	2.0	26	92	0	86	28	17	25	28	1.97
36020830--36020882	26	2.0	26	92	0	88	28	18	24	28	1.98
36021579--36022022	159	2.8	158	76	6	439	24	30	26	18	1.98
36022052--36022104	26	2.0	26	88	0	79	26	22	24	26	2.00
36022420--36022472	26	2.0	26	92	0	88	24	22	26	26	2.00
36024012--36024064	26	2.0	26	96	0	97	24	20	28	26	1.99
36023342--36024075	354	2.1	342	80	7	802	24	27	25	21	1.99
36024615--36024667	26	2.0	26	88	0	79	26	18	26	28	1.98
36024613--36026845	722	3.1	716	86	4	3169	27	22	23	26	1.99
36026049--36026101	26	2.0	26	92	0	88	24	18	28	28	1.98
36027272--36027325	26	2.0	26	89	3	81	31	20	25	22	1.98
36028111--36028163	26	2.0	26	89	7	81	26	18	26	28	1.98
36027875--36029208	331	4.0	327	74	12	934	24	29	26	20	1.99
36028622--36029046	158	2.7	157	80	2	483	24	30	26	18	1.98
36028630--36029110	159	3.0	157	78	3	489	24	30	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36029127--36029179	26	2.0	26	88	0	79	26	18	26	28	1.98
36030351--36030403	26	2.0	26	96	0	97	32	20	20	26	1.98
36031248--36031300	26	2.0	26	96	0	97	24	20	28	26	1.99
36031943--36031995	26	2.0	26	89	7	81	30	20	22	26	1.98
36033667--36033720	27	2.0	27	92	3	92	25	18	27	27	1.98
36033350--36034488	356	3.3	344	79	7	1035	22	29	27	20	1.98
36034023--36034075	26	2.0	26	85	7	72	30	18	22	28	1.98
36034363--36034415	26	2.0	26	89	7	81	26	18	26	28	1.98
36035744--36035796	26	2.0	26	92	7	90	28	20	24	26	1.99
36035927--36035976	26	1.9	26	95	0	91	26	20	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402