genome.fa.s8.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  106  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30858977--30859147	93	1.8	93	96	0	315	27	29	22	20	1.98
30858969--30859149	46	3.9	46	81	9	233	27	29	21	20	1.98
30861061--30861112	26	2.0	26	100	0	104	23	26	7	42	1.81
30863909--30863943	15	2.4	14	90	9	61	28	0	0	71	0.86
30866072--30866113	19	2.2	20	83	12	52	50	21	0	28	1.49
30867776--30867951	46	3.8	45	79	10	203	21	19	30	28	1.98
30867772--30867943	93	1.8	93	93	0	299	20	20	30	27	1.98
30872041--30872098	29	2.0	29	100	0	116	41	13	6	37	1.72
30888616--30888792	93	1.9	93	88	6	270	24	27	20	27	1.99
30891738--30891798	30	2.0	30	100	0	122	40	9	9	39	1.72
30893747--30893802	22	2.5	22	97	0	103	16	30	26	26	1.96
30894001--30894065	32	2.0	32	87	0	94	21	3	21	53	1.59
30896899--30897027	57	2.3	57	95	0	240	38	17	14	28	1.90
30898146--30898180	17	2.1	18	89	10	56	31	11	8	48	1.69
30901792--30901882	40	2.2	42	86	7	123	46	3	4	46	1.39
30901973--30902012	2	20.0	2	100	0	80	50	0	0	50	1.00
30913129--30913289	29	5.6	29	93	0	259	26	14	32	26	1.95
30924050--30924210	29	5.6	29	93	0	259	26	14	32	26	1.95
30935892--30935946	20	2.8	20	80	8	58	60	1	7	30	1.35
30935908--30935954	20	2.3	20	82	17	69	53	4	6	36	1.46
30935932--30935995	31	2.1	29	83	11	76	57	3	1	37	1.24
30936094--30936130	17	2.1	17	90	5	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30939097--30939135	16	2.3	17	91	8	62	35	0	0	64	0.94
30939098--30939143	9	5.3	9	80	15	53	39	0	0	60	0.97
30939097--30939143	17	2.7	18	87	12	64	38	0	0	61	0.96
30946696--30946844	42	3.5	41	83	7	174	31	14	24	30	1.94
30953810--30953903	40	2.3	40	82	7	111	24	14	27	32	1.95
30956321--30956536	45	4.7	44	75	13	177	24	28	19	28	1.98
30968444--30968554	58	1.9	57	87	1	159	28	18	27	24	1.98
30968444--30968545	29	3.6	29	80	11	120	28	19	27	24	1.99
30971217--30971313	28	3.5	28	95	1	169	19	10	25	44	1.82
30972932--30972969	20	1.9	20	88	0	58	52	10	2	34	1.50
30979195--30979290	28	3.5	28	95	1	167	19	10	25	44	1.82
30980907--30980944	20	1.9	20	88	0	58	52	10	2	34	1.50
30986565--30986703	41	3.4	40	83	3	116	27	27	17	27	1.98
30986589--30986715	41	3.1	41	87	3	168	25	28	20	25	1.99
30991623--30991719	27	3.5	28	94	4	171	30	26	13	28	1.94
30999791--30999953	39	4.2	39	93	0	263	23	20	31	24	1.98
30999791--30999983	39	4.9	39	90	0	251	23	21	31	23	1.98
31002866--31002962	27	3.5	28	94	4	171	30	26	13	28	1.94
31005266--31005333	6	13.4	5	79	17	54	20	4	0	75	0.98
31008780--31008834	24	2.3	24	96	0	101	52	14	25	7	1.67
31008757--31008840	8	10.6	8	77	6	73	51	16	22	9	1.73
31009050--31009164	29	4.0	29	81	6	128	26	14	29	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31009063--31009173	57	1.9	58	85	1	152	26	15	30	27	1.96
31012820--31012919	29	3.5	29	81	1	112	27	14	30	29	1.95
31014505--31014630	46	2.7	46	95	0	216	21	22	26	29	1.99
31039335--31039465	48	2.8	48	82	13	157	23	25	20	29	1.99
31045457--31045622	40	4.2	40	89	1	235	24	21	27	27	1.99
31048621--31048673	25	2.1	25	89	0	79	28	15	24	32	1.95
31051979--31052009	13	2.4	13	94	0	53	0	0	16	83	0.64
31052186--31052389	43	4.7	44	76	4	171	30	18	16	34	1.93
31052222--31052393	44	3.9	44	77	2	130	31	19	16	32	1.94
31052351--31052576	96	2.3	97	80	2	231	29	18	16	35	1.93
31053997--31054066	27	2.6	27	88	2	104	31	25	14	28	1.95
31054075--31054180	42	2.5	42	96	0	194	21	33	15	30	1.94
31061463--31061670	40	5.2	39	84	1	209	25	25	22	26	2.00
31061463--31061668	80	2.6	81	84	3	247	24	26	22	26	2.00
31069446--31069653	40	5.2	39	84	1	209	25	25	22	26	2.00
31069446--31069651	80	2.6	81	84	3	247	24	26	22	26	2.00
31073342--31073450	42	2.6	42	95	0	200	29	15	33	22	1.95
31073482--31073540	27	2.2	27	84	6	75	28	16	22	32	1.96
31075204--31075377	96	1.8	96	83	0	231	27	21	17	33	1.96
31075301--31075424	45	2.8	44	80	3	131	29	19	15	36	1.92
31075163--31075394	96	2.4	95	76	3	230	28	18	17	35	1.93
31090851--31090966	58	2.0	58	98	0	223	24	14	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31095550--31095600	26	2.0	26	84	0	66	15	19	27	37	1.92
31095806--31095872	32	2.1	32	94	0	116	31	19	13	35	1.90
31100869--31101056	40	4.7	40	83	6	222	23	27	23	25	2.00
31100862--31101055	80	2.4	80	83	4	248	23	27	23	24	2.00
31108938--31109165	39	5.8	40	89	5	322	23	28	24	23	2.00
31112560--31112731	93	1.8	93	96	0	317	27	30	22	20	1.98
31112552--31112727	46	3.8	46	81	10	232	28	29	21	20	1.98
31115109--31115197	30	3.0	30	80	8	101	57	15	16	10	1.65
31115109--31115188	15	5.4	15	80	7	92	58	13	17	10	1.62
31115120--31115197	15	5.2	15	78	9	79	56	15	16	11	1.67
31118151--31118322	93	1.8	93	96	0	317	27	30	22	20	1.98
31118143--31118318	46	3.8	46	81	10	232	28	29	21	20	1.98
31124226--31124396	46	3.7	47	76	7	170	29	21	26	22	1.99
31124226--31124489	46	5.7	44	74	12	158	28	19	28	23	1.98
31124320--31124682	49	7.6	49	76	13	228	26	18	30	25	1.98
31127554--31127595	19	2.2	19	100	0	84	38	28	4	28	1.77
31127745--31128020	50	5.5	50	80	3	270	31	27	16	23	1.96
31127792--31127973	101	1.8	101	90	0	292	29	26	18	25	1.98
31127724--31128018	150	1.9	151	87	4	425	31	26	17	24	1.97
31134477--31134530	19	2.8	20	83	5	67	44	9	18	27	1.80
31138283--31138469	40	4.7	40	86	5	236	22	21	28	26	1.99
31144515--31144639	29	4.3	30	86	7	161	25	13	29	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31145836--31145865	15	1.9	16	93	6	53	10	0	13	76	1.01
31147463--31147642	40	4.4	40	79	3	164	22	25	23	28	1.99
31160487--31160611	43	2.9	41	76	8	133	32	22	16	28	1.96
31163485--31163552	34	2.0	34	94	0	118	32	23	8	35	1.86
31167910--31168066	43	3.7	43	73	7	140	32	24	15	26	1.96
31177712--31177769	29	2.0	29	100	0	116	34	10	17	37	1.84
31184701--31184848	41	3.6	41	83	7	194	22	20	28	27	1.99
31186589--31186625	18	2.1	19	90	10	60	29	8	27	35	1.85
31190600--31190641	21	2.0	20	86	13	59	38	0	11	50	1.40
31193143--31193337	38	5.0	38	86	3	230	31	24	22	21	1.98
31198457--31198609	40	3.8	40	78	9	143	22	23	28	25	2.00
31203050--31203164	42	2.7	42	83	1	131	17	23	33	26	1.96
31215993--31216100	26	4.2	26	93	0	189	32	7	24	36	1.83
31220479--31220522	17	2.6	17	81	0	52	22	6	0	70	1.11
31226991--31227153	42	3.9	42	77	6	152	30	24	17	28	1.97
31229376--31229484	53	2.1	53	96	0	200	31	22	9	37	1.85
31231832--31231959	45	2.8	45	81	5	143	28	29	15	25	1.96
31243421--31243454	15	2.3	15	89	0	50	44	41	2	11	1.56
31244170--31244291	43	2.9	42	80	2	154	29	24	15	30	1.96
31246898--31247057	42	3.8	42	76	4	126	29	23	15	31	1.95
31259871--31260021	40	3.8	38	78	10	133	25	23	27	24	2.00
31267909--31268110	40	5.1	40	75	9	148	23	24	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31267908--31268059	78	1.9	79	84	5	200	25	23	26	24	2.00
31274190--31274250	31	2.0	31	93	0	104	24	24	14	36	1.93
31274457--31274542	26	3.4	25	86	10	113	26	22	23	27	1.99
31274470--31274541	26	2.8	26	93	2	119	27	22	25	25	2.00
31279500--31279533	17	2.0	17	94	0	59	20	20	17	41	1.91
31282155--31282376	46	4.8	45	75	11	171	28	18	28	24	1.98
31283312--31283367	29	2.0	28	82	10	69	17	19	41	21	1.91
31285715--31285747	13	2.6	13	90	4	50	48	12	0	39	1.40
31288655--31288706	20	2.7	19	85	8	61	76	0	7	15	0.99
31288675--31288727	18	2.9	18	86	8	63	75	0	11	13	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425