genome.fa.s8.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  157  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47815740--47815798	31	1.9	31	100	0	118	42	8	10	38	1.69
47819223--47819252	13	2.3	13	100	0	60	13	26	26	33	1.93
47821974--47822140	40	4.2	40	80	2	176	24	26	21	26	1.99
47825082--47825201	47	2.6	47	93	0	204	36	14	24	25	1.93
47825180--47825374	54	3.6	54	81	4	214	36	15	24	23	1.93
47825188--47825386	108	1.8	109	84	1	274	36	15	24	23	1.93
47830061--47830098	16	2.4	16	91	4	60	31	10	0	57	1.32
47830446--47830525	27	3.0	27	70	7	72	30	21	30	18	1.97
47835878--47835954	26	3.0	26	76	0	82	37	23	20	18	1.94
47837573--47837625	24	2.2	24	82	0	61	16	37	3	41	1.67
47844159--47844196	19	2.0	19	85	10	51	21	44	21	13	1.85
47847017--47847303	48	6.0	48	91	3	402	26	16	29	27	1.97
47870279--47870319	20	2.0	20	85	9	55	46	17	7	29	1.74
47871507--47871547	16	2.6	16	100	0	82	31	29	29	9	1.89
47871562--47871917	40	8.9	40	90	0	559	26	30	20	22	1.98
47874260--47874517	40	6.5	40	93	1	412	25	27	22	23	2.00
47882244--47882500	40	6.4	40	94	1	410	25	27	22	24	2.00
47888311--47888412	45	2.3	45	87	3	143	26	28	10	34	1.90
47890956--47890996	20	2.0	20	85	9	55	46	17	7	29	1.74
47894237--47894262	12	2.2	12	100	0	52	57	0	0	42	0.98
47901212--47901239	2	14.0	2	100	0	56	50	0	0	50	1.00
47903437--47903643	40	5.2	40	80	4	213	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47903437--47903643	79	2.6	79	81	6	222	25	22	27	25	2.00
47911486--47911687	40	5.2	40	79	9	204	25	21	27	25	1.99
47911486--47911687	75	2.6	78	81	9	218	25	21	27	25	1.99
47913418--47913490	32	2.2	33	90	2	112	30	26	20	23	1.99
47921208--47921271	32	2.0	33	87	3	94	28	21	21	28	1.99
47921217--47921279	32	1.9	32	83	3	81	28	25	19	26	1.98
47922861--47922930	27	2.5	28	86	2	97	32	25	14	27	1.94
47922938--47923044	42	2.5	42	96	0	196	22	33	14	28	1.94
47929781--47929850	27	2.5	28	86	2	97	32	25	14	27	1.94
47929858--47929964	42	2.5	42	96	0	196	22	33	14	28	1.94
47936383--47936483	28	3.5	29	86	6	125	29	27	13	28	1.95
47940715--47940850	48	2.8	48	81	0	155	30	19	22	27	1.98
47946467--47946635	27	6.3	27	87	0	194	25	19	20	34	1.96
47946468--47946692	81	2.8	81	82	5	240	27	17	19	36	1.94
47946509--47946681	54	3.2	53	80	8	172	27	16	20	35	1.94
47946590--47946692	27	3.8	27	93	0	179	29	9	22	38	1.86
47946724--47946811	25	3.5	25	89	6	133	28	20	27	23	1.99
47947021--47947161	27	5.3	27	86	2	187	22	19	20	36	1.95
47947021--47947158	54	2.6	54	88	1	206	22	20	21	36	1.95
47947029--47947180	81	1.9	80	83	4	198	23	20	21	35	1.96
47947065--47947242	54	3.3	54	83	4	182	25	14	22	37	1.92
47947143--47947244	27	3.8	27	94	0	177	28	9	22	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47947248--47947393	27	5.4	27	90	3	222	41	9	22	26	1.85
47947227--47947410	81	2.3	81	85	3	264	36	8	21	32	1.84
47949820--47949916	25	4.0	23	85	8	77	26	22	22	27	1.99
47949847--47949937	25	3.7	24	91	5	137	27	25	25	21	2.00
47950144--47950368	27	8.3	27	80	3	177	25	15	20	39	1.91
47950143--47950366	54	4.1	54	80	4	211	25	15	20	38	1.91
47950280--47950393	54	2.1	54	83	3	140	30	8	21	39	1.83
47950372--47950517	27	5.4	27	91	0	238	39	8	23	28	1.85
47950351--47950542	81	2.4	81	84	0	276	34	8	23	32	1.85
47952668--47952884	40	5.5	40	84	3	262	23	23	28	24	2.00
47959064--47959176	46	2.5	44	84	5	138	23	31	21	23	1.98
47961980--47962204	40	5.6	40	93	0	351	30	25	20	23	1.99
47965697--47965764	28	2.4	29	82	9	86	30	29	11	27	1.92
47965981--47966026	15	3.0	16	78	9	51	6	23	21	47	1.74
47967067--47967120	27	2.0	27	100	0	108	22	22	3	51	1.63
47975009--47975039	16	1.9	16	93	0	53	41	6	12	38	1.69
47975025--47975068	19	2.3	19	84	7	54	50	2	13	34	1.55
47981896--47982062	40	4.2	39	84	8	205	23	21	28	26	1.99
47981896--47982062	79	2.1	79	86	5	230	23	21	28	26	1.99
47994691--47994723	8	4.2	8	88	7	50	87	0	12	0	0.53
47995997--47996128	29	4.6	29	91	0	201	26	15	32	25	1.95
48002913--48003082	93	1.8	92	96	1	313	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48002907--48003091	45	4.0	46	74	17	159	28	29	20	22	1.98
48003502--48003561	30	2.0	30	90	0	93	30	25	8	36	1.85
48005929--48005987	27	2.2	27	96	0	109	25	16	25	32	1.97
48007182--48007225	23	2.0	22	86	4	61	25	0	20	54	1.45
48009036--48009160	46	2.7	46	92	0	196	23	20	26	29	1.99
48018647--48018671	2	12.5	2	100	0	50	52	0	0	48	1.00
48021666--48021778	56	2.0	56	87	0	163	25	13	26	34	1.93
48022605--48022636	2	16.0	2	93	0	55	50	3	0	46	1.17
48023444--48023478	2	17.5	2	100	0	70	51	0	0	48	1.00
48026823--48027021	53	3.7	53	76	8	197	22	22	18	37	1.94
48026825--48027021	107	1.8	108	86	3	290	22	22	17	37	1.94
48026824--48027029	54	3.9	54	77	6	204	22	22	17	36	1.94
48027219--48027304	44	2.0	44	83	4	111	26	22	12	38	1.90
48033436--48033642	53	3.8	53	80	5	209	22	24	17	35	1.95
48033436--48033634	108	1.8	108	86	1	290	22	24	18	35	1.96
48034451--48034511	30	2.0	30	87	0	86	34	22	6	36	1.81
48035685--48035748	31	2.1	31	90	0	101	25	23	15	35	1.94
48035939--48036104	24	7.0	24	88	4	239	26	21	22	28	1.99
48035938--48036104	47	3.5	48	89	4	241	26	21	22	29	1.99
48035939--48036104	71	2.3	71	91	3	262	26	21	22	28	1.99
48036157--48036237	20	4.2	20	90	6	139	32	18	12	37	1.88
48036157--48036226	11	7.1	11	67	23	57	31	18	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48036161--48036237	38	2.0	37	92	5	118	33	19	10	36	1.86
48037473--48037556	27	3.1	27	89	3	116	21	25	21	32	1.98
48037473--48037566	27	3.5	26	85	7	109	21	24	19	35	1.96
48037603--48037738	52	2.6	54	78	11	156	31	10	18	39	1.84
48037595--48037738	27	5.4	27	77	16	113	31	10	20	38	1.86
48037624--48037738	25	4.3	27	74	17	91	30	8	20	40	1.82
48037866--48038082	27	7.8	27	74	15	138	40	8	22	28	1.84
48037899--48037980	38	2.2	38	82	4	94	40	7	29	23	1.81
48037828--48038059	117	2.0	117	83	5	290	40	7	22	28	1.82
48040425--48040619	55	3.6	54	84	4	241	21	25	17	35	1.95
48041429--48041485	30	1.9	30	85	7	80	28	26	10	35	1.89
48047040--48047246	53	3.8	53	80	5	209	22	24	17	35	1.95
48047040--48047238	108	1.8	108	86	1	290	22	24	18	35	1.96
48048057--48048117	30	2.0	30	87	0	86	34	22	6	36	1.81
48049272--48049621	27	12.9	27	82	2	243	39	19	10	31	1.85
48049458--48049667	111	1.9	110	80	5	244	41	17	10	30	1.84
48049881--48049996	41	2.9	41	83	7	141	21	18	30	29	1.97
48049885--48049996	37	2.9	37	85	5	134	21	19	30	28	1.98
48053400--48053496	33	2.9	33	87	0	131	26	27	21	23	1.99
48053875--48054018	27	5.4	27	77	1	146	27	18	17	36	1.94
48054012--48054074	27	2.4	27	83	2	83	36	12	12	38	1.82
48061933--48062035	29	3.6	28	81	5	116	21	16	33	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48065912--48066086	6	28.3	6	70	18	119	48	13	18	20	1.80
48065935--48066082	37	4.0	37	77	12	133	47	13	18	20	1.81
48065975--48066086	25	4.5	25	88	0	170	47	13	18	20	1.82
48065975--48066086	50	2.2	50	95	0	206	47	13	18	20	1.82
48065933--48066042	31	3.5	31	78	14	127	48	12	19	20	1.81
48066559--48066624	27	2.5	26	76	16	71	39	21	18	21	1.93
48066649--48066844	27	7.3	27	90	0	275	24	19	18	37	1.94
48066890--48067176	54	5.3	54	85	4	310	31	8	20	40	1.82
48066887--48067176	27	10.7	27	82	2	269	31	8	20	39	1.82
48066982--48067176	54	3.6	54	92	2	320	31	7	19	41	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425