genome.fa.s8.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  143  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43435199--43435227	13	2.1	14	93	6	51	55	13	31	0	1.39
43437176--43437343	40	4.2	40	76	15	170	25	22	27	25	2.00
43437178--43437343	80	2.1	80	87	4	237	25	22	27	24	2.00
43443290--43443456	40	4.2	39	77	13	173	25	21	27	25	1.99
43443292--43443456	79	2.1	80	87	3	235	25	21	27	24	1.99
43451049--43451210	39	4.2	39	91	2	254	23	19	32	24	1.98
43451066--43451240	39	4.5	40	87	2	169	23	22	32	22	1.98
43453924--43453954	16	1.9	16	93	0	53	35	22	0	41	1.54
43453921--43453960	20	2.0	20	85	0	53	37	22	0	40	1.54
43454185--43454388	55	3.8	53	79	7	205	22	26	16	34	1.95
43454193--43454337	53	2.7	53	84	4	193	22	25	17	33	1.96
43461660--43462041	51	7.5	50	85	2	365	25	18	26	29	1.98
43461707--43461990	102	2.8	101	86	3	417	25	20	26	27	1.99
43462122--43462378	128	2.0	128	100	0	514	36	8	24	30	1.85
43465172--43465272	28	3.5	29	86	6	125	29	27	13	28	1.95
43472978--43473078	28	3.5	29	86	6	125	29	27	13	28	1.95
43474843--43474886	20	2.3	18	84	7	52	22	36	34	6	1.81
43478220--43478372	40	3.9	39	87	2	200	25	31	20	22	1.98
43478251--43478372	38	3.1	39	90	5	185	26	31	19	22	1.98
43480338--43480490	75	2.0	75	97	0	288	28	18	8	43	1.80
43482115--43482221	42	2.5	41	77	5	99	29	24	14	30	1.95
43484932--43485136	95	2.1	96	82	7	256	23	27	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43484871--43485188	48	6.6	48	74	7	236	22	29	19	27	1.98
43491544--43491815	144	1.9	144	84	1	366	22	28	20	28	1.99
43491544--43491823	48	5.8	48	76	1	238	23	28	20	27	1.99
43494347--43494527	48	3.8	48	87	0	254	29	26	17	25	1.98
43494510--43494591	37	2.2	37	86	0	110	26	25	20	26	1.99
43497537--43497597	30	2.0	30	93	0	104	44	11	9	34	1.74
43504333--43504495	39	4.2	39	88	0	245	22	21	32	23	1.98
43512220--43512382	39	4.2	39	90	0	254	22	20	33	23	1.98
43512220--43512413	39	4.9	39	87	0	244	22	22	32	22	1.98
43515748--43515993	49	5.0	50	81	4	275	25	17	26	30	1.97
43522776--43523010	49	4.8	50	74	7	185	26	16	27	30	1.96
43525443--43525498	29	2.0	28	96	3	103	17	19	28	33	1.95
43526882--43526922	21	2.0	21	85	0	55	53	2	2	41	1.27
43527958--43528160	56	3.6	56	86	1	282	27	13	22	36	1.92
43527948--43528160	112	1.9	111	88	2	320	28	12	23	36	1.91
43528869--43528928	31	1.9	31	89	0	93	28	21	16	33	1.95
43529145--43529244	25	4.1	25	94	5	179	27	20	20	33	1.97
43529139--43529244	24	4.4	24	92	5	178	26	21	19	32	1.97
43529302--43529358	9	5.9	9	73	15	51	35	21	8	35	1.84
43529298--43529360	20	3.2	20	95	0	117	31	19	12	36	1.89
43529397--43529444	25	1.9	25	86	0	69	25	16	25	33	1.96
43529863--43529890	8	3.5	8	100	0	56	14	21	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43534069--43534093	13	1.9	13	100	0	50	24	0	40	36	1.55
43534083--43534117	17	2.1	17	100	0	70	25	17	28	28	1.97
43542272--43542419	42	3.5	42	78	4	129	29	25	16	27	1.97
43548070--43548110	18	2.4	17	84	8	55	82	0	7	9	0.83
43549823--43549850	1	28.0	1	100	0	56	0	0	0	100	0.00
43554188--43554215	5	5.6	5	100	0	56	17	0	0	82	0.68
43560582--43560612	2	15.0	2	93	6	53	48	0	3	48	1.17
43571459--43571491	14	2.4	14	94	0	57	87	0	12	0	0.53
43577696--43578316	308	2.0	308	96	0	1152	34	11	23	30	1.90
43578529--43578631	38	2.7	38	82	5	118	24	23	24	28	2.00
43578629--43578740	43	2.6	43	97	0	206	11	26	32	29	1.92
43579728--43579764	19	2.1	19	85	10	51	51	0	8	40	1.32
43583921--43583957	19	2.1	19	85	10	51	51	0	8	40	1.32
43585752--43585805	28	2.0	27	92	3	90	46	24	9	20	1.79
43587128--43587299	93	1.8	93	96	0	317	27	30	22	20	1.98
43587120--43587295	46	3.8	46	81	10	232	28	29	21	20	1.98
43589680--43589767	29	3.0	29	80	8	97	56	15	17	10	1.66
43589680--43589758	15	5.4	15	77	10	83	58	13	17	10	1.63
43589691--43589767	15	5.2	15	75	9	77	55	15	16	11	1.68
43592718--43592889	93	1.8	93	96	0	317	27	30	22	20	1.98
43592710--43592885	46	3.8	46	81	10	232	28	29	21	20	1.98
43608801--43608883	41	2.0	41	100	0	166	37	14	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43610796--43611011	40	5.5	40	88	4	289	25	26	22	25	2.00
43616648--43616674	9	3.0	9	100	0	54	22	11	11	55	1.66
43621434--43621606	46	3.7	46	77	13	201	22	20	27	28	1.99
43621431--43621601	93	1.8	93	94	0	306	22	21	28	28	1.99
43621816--43621863	23	2.1	23	100	0	96	45	4	29	20	1.70
43631241--43631394	76	2.0	75	91	1	245	28	11	18	41	1.85
43632309--43632459	43	3.5	42	79	4	149	27	15	23	33	1.95
43638567--43638605	21	1.9	20	89	5	60	46	23	2	28	1.65
43641549--43641649	40	2.5	40	96	0	184	20	18	29	30	1.97
43641549--43641667	40	3.0	40	89	0	130	22	21	27	28	1.99
43657425--43657608	40	4.6	39	75	6	138	26	23	27	22	2.00
43657465--43657653	80	2.4	81	77	4	186	23	24	29	22	1.99
43661063--43661288	40	5.6	41	82	7	230	29	15	23	32	1.94
43667515--43667625	43	2.6	43	81	5	118	32	18	18	30	1.95
43673437--43673481	23	2.0	23	86	0	63	53	26	4	15	1.61
43674210--43674322	43	2.6	44	75	8	117	32	23	15	28	1.95
43674210--43674366	86	1.8	85	85	6	219	33	23	15	28	1.95
43679796--43680020	41	5.5	41	81	3	240	21	26	16	35	1.95
43688498--43688587	45	2.0	45	93	4	155	35	18	17	27	1.94
43693919--43693985	27	2.4	27	82	2	80	32	22	13	31	1.92
43695324--43695364	14	2.7	15	80	20	50	12	19	0	68	1.21
43702103--43702167	33	2.0	32	96	3	121	41	0	27	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43703408--43703603	39	5.0	39	89	0	275	26	19	31	22	1.98
43703408--43703642	78	3.0	78	86	1	299	25	20	31	22	1.98
43711490--43711607	39	3.0	39	92	1	182	27	20	30	22	1.98
43711509--43711651	39	3.6	40	86	0	128	22	23	32	22	1.98
43714709--43714792	31	2.6	31	88	3	114	57	19	8	15	1.63
43715039--43715085	21	2.2	21	88	0	67	4	51	19	25	1.65
43730814--43731014	40	5.0	39	82	3	213	26	26	21	24	1.99
43730814--43731014	80	2.5	80	83	4	237	26	26	21	24	1.99
43738756--43738918	40	4.1	40	80	6	170	26	27	22	23	1.99
43746863--43747022	29	5.5	30	88	8	222	33	13	25	27	1.94
43746863--43747022	59	2.8	57	89	4	223	33	13	25	27	1.94
43756994--43757020	14	1.9	14	100	0	54	74	25	0	0	0.83
43757438--43757483	24	1.9	24	82	8	58	28	30	17	23	1.97
43757554--43757586	2	16.5	2	93	0	57	48	0	3	48	1.17
43761915--43761986	28	2.5	29	91	6	112	30	13	26	29	1.94
43768443--43768488	24	1.9	24	82	8	58	30	30	15	23	1.95
43768559--43768593	2	17.5	2	93	0	61	48	0	2	48	1.16
43772331--43772526	39	5.0	39	94	0	311	22	31	19	26	1.98
43774793--43774826	9	3.9	9	88	3	52	35	11	20	32	1.89
43779705--43779910	55	3.8	54	77	5	211	37	17	24	20	1.94
43785929--43786094	43	3.9	43	83	1	190	32	25	16	25	1.96
43785886--43786094	86	2.4	86	80	3	226	33	25	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43797300--43797497	40	4.9	40	91	4	287	27	21	26	25	1.99
43797353--43797544	40	4.8	40	90	5	121	27	20	26	25	1.99
43797300--43797532	120	1.9	120	81	10	280	27	21	26	25	1.99
43805475--43805671	40	4.9	40	92	4	294	27	20	26	25	1.99
43805475--43805706	119	1.9	120	82	9	287	27	20	26	25	1.99
43805488--43805732	79	3.1	79	84	8	243	28	20	26	25	1.99
43811147--43811216	27	2.6	27	97	2	131	31	27	12	28	1.93
43813039--43813198	27	5.9	27	87	0	221	26	21	18	34	1.96
43813037--43813206	54	3.1	54	90	0	259	27	20	17	35	1.94
43813244--43813610	27	13.6	27	82	2	351	31	9	20	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425