genome.fa.s8.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  339  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105131008--105131041	16	2.1	16	88	0	50	35	20	2	41	1.68
105132601--105132650	21	2.5	20	78	12	57	40	26	0	34	1.56
105142487--105142628	39	3.6	39	87	1	169	21	20	30	27	1.98
105143393--105143439	23	2.0	23	100	0	94	34	14	21	29	1.93
105144114--105144184	21	3.2	21	66	24	56	36	23	15	23	1.94
105144098--105144185	45	2.0	45	95	0	158	38	23	13	23	1.91
105151937--105152032	24	3.8	25	75	14	81	39	21	22	15	1.91
105153084--105153194	58	1.9	58	88	0	168	40	16	16	27	1.89
105154156--105154211	28	2.0	28	96	0	103	42	12	10	33	1.77
105157207--105157268	18	3.4	18	68	27	58	27	6	17	48	1.72
105157200--105157275	37	2.1	37	100	0	152	23	10	18	47	1.79
105157954--105158061	23	4.7	23	73	12	96	24	22	20	33	1.97
105159499--105159630	66	2.0	66	95	0	237	43	3	17	36	1.65
105159763--105159820	25	2.4	24	76	21	66	34	22	25	17	1.96
105159978--105160048	25	2.9	24	72	4	61	36	18	25	19	1.94
105160378--105160402	5	5.0	5	100	0	50	40	20	0	40	1.52
105162041--105162176	29	4.7	29	77	3	121	58	22	2	15	1.50
105162041--105162176	58	2.3	58	80	7	168	58	22	2	15	1.50
105162076--105162173	15	6.7	15	67	5	58	61	20	3	15	1.47
105170434--105170519	3	28.7	3	92	0	91	56	2	8	32	1.41
105170662--105170723	21	2.9	21	83	11	65	74	1	4	19	1.09
105170690--105170726	14	2.7	14	87	4	58	78	2	0	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105172466--105172530	4	17.5	4	72	20	52	21	3	1	73	1.05
105172469--105172530	21	3.0	19	77	13	54	20	3	1	74	1.05
105172497--105172543	12	3.9	12	80	8	51	21	6	2	70	1.20
105175877--105175984	44	2.4	44	87	3	144	29	23	13	33	1.93
105183239--105183346	44	2.4	44	87	3	144	29	23	13	33	1.93
105184481--105184508	2	14.0	2	100	0	56	50	0	0	50	1.00
105187887--105187927	2	20.5	2	100	0	82	51	0	0	48	1.00
105189272--105189326	19	2.8	20	74	23	53	27	20	7	45	1.77
105191568--105191631	18	3.5	19	78	16	73	57	7	6	28	1.51
105191598--105191640	3	14.3	3	80	0	50	62	6	2	27	1.33
105193695--105193773	41	1.9	41	97	0	149	40	12	10	36	1.77
105199652--105199679	2	14.0	2	100	0	56	50	0	0	50	1.00
105200604--105200653	3	16.7	3	100	0	100	68	0	0	32	0.90
105206994--105207057	3	21.7	3	96	3	121	32	0	0	67	0.91
105208804--105208865	11	5.8	10	81	12	70	27	29	0	43	1.55
105208811--105208865	21	2.6	21	85	8	67	29	27	0	43	1.55
105209994--105210019	7	3.7	7	100	0	52	26	0	15	57	1.38
105209991--105210025	14	2.5	13	86	13	52	25	0	14	60	1.35
105210515--105210581	30	2.2	31	86	5	93	25	41	19	13	1.88
105210926--105210980	21	2.6	21	94	2	92	25	45	20	9	1.80
105214305--105214354	23	2.2	23	85	7	66	72	4	18	6	1.22
105215894--105215980	21	4.0	23	80	10	92	14	21	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105222168--105222217	23	2.2	23	85	7	66	72	4	18	6	1.22
105223756--105223842	21	4.0	23	80	10	92	14	21	25	37	1.92
105225227--105225794	126	4.5	125	88	0	796	27	19	16	36	1.93
105225227--105225794	251	2.3	252	88	1	827	27	19	16	36	1.93
105226669--105226784	60	1.9	60	83	3	151	32	11	12	43	1.79
105226750--105226816	29	2.2	30	78	5	73	31	14	17	35	1.91
105229216--105229246	2	15.5	2	100	0	62	51	0	0	48	1.00
105231806--105231834	2	14.5	2	100	0	58	51	0	0	48	1.00
105233971--105234013	2	21.5	2	85	0	59	44	0	0	55	0.99
105242750--105242784	17	2.1	17	88	0	52	45	5	0	48	1.26
105245887--105246271	111	3.4	109	76	12	250	31	16	19	31	1.94
105249234--105249360	65	2.0	65	85	0	173	33	21	11	33	1.88
105249230--105249360	33	4.0	33	83	5	140	33	20	12	33	1.90
105249355--105249421	29	2.3	29	94	0	116	25	28	10	35	1.89
105250280--105250331	26	2.0	26	100	0	104	38	7	26	26	1.83
105254686--105254745	30	2.0	30	86	0	84	38	6	25	30	1.81
105257993--105258153	42	3.7	42	81	8	162	29	26	14	29	1.95
105258063--105258199	49	2.9	48	85	4	170	29	27	13	29	1.94
105258079--105258250	95	1.8	93	81	5	211	29	26	15	28	1.96
105258078--105258248	47	3.6	46	85	3	162	29	26	15	28	1.96
105258276--105258416	31	4.5	31	86	5	178	29	25	15	29	1.96
105258268--105258416	62	2.4	62	86	6	196	28	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105258392--105258520	50	2.5	51	89	2	206	25	20	16	37	1.93
105260710--105260836	65	2.0	65	87	3	184	34	21	11	32	1.90
105260706--105260836	33	4.0	33	84	6	151	34	20	12	32	1.91
105261922--105262104	93	2.0	93	90	2	287	24	24	23	27	2.00
105265301--105265541	41	5.9	41	91	0	367	28	21	27	21	1.99
105266156--105266228	24	3.0	24	100	0	146	53	0	4	42	1.20
105266169--105266228	12	5.0	12	75	0	66	55	0	3	41	1.16
105267043--105267094	14	3.8	13	77	12	52	61	3	0	34	1.14
105268563--105268590	14	2.0	14	100	0	56	42	21	14	21	1.88
105270827--105270900	29	2.6	29	95	0	139	27	31	14	27	1.95
105270768--105270900	58	2.3	58	80	2	133	24	33	17	24	1.96
105279263--105279336	29	2.6	29	95	0	139	27	31	14	27	1.95
105279204--105279336	58	2.3	58	80	2	133	24	33	17	24	1.96
105287136--105287209	29	2.6	29	95	0	139	27	31	14	27	1.95
105287077--105287209	58	2.3	58	80	2	133	24	33	17	24	1.96
105298990--105299053	26	2.5	24	73	16	58	64	0	9	26	1.24
105300092--105300122	13	2.4	13	94	0	53	19	35	29	16	1.93
105308039--105308069	13	2.4	13	100	0	62	12	29	32	25	1.93
105321761--105321796	18	2.1	18	89	5	56	13	25	44	16	1.85
105323720--105323872	27	6.2	26	70	19	96	61	0	13	24	1.32
105323713--105324069	75	5.0	72	75	12	294	62	0	13	24	1.33
105323769--105324029	134	1.9	138	89	3	413	61	0	13	25	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105323770--105324036	48	5.8	48	80	9	322	61	0	13	25	1.35
105323773--105324088	49	6.8	47	74	15	212	61	0	12	25	1.34
105324081--105324170	6	16.6	5	74	17	56	57	2	15	24	1.49
105324081--105324170	17	5.5	17	72	13	73	57	2	15	24	1.49
105323903--105324173	124	2.2	119	79	15	275	60	0	13	25	1.38
105324536--105324577	22	2.0	22	90	4	68	61	0	14	23	1.32
105324555--105324593	16	2.5	16	87	4	53	64	0	12	23	1.28
105324666--105324738	5	13.0	5	73	21	56	54	0	16	28	1.42
105324670--105324737	12	5.8	12	78	13	79	54	0	16	29	1.42
105324668--105324737	23	3.0	23	83	10	88	52	0	17	30	1.44
105324682--105324776	47	2.0	46	84	6	120	54	1	15	28	1.48
105324774--105324888	18	6.1	19	72	14	78	59	2	10	27	1.44
105324761--105324871	18	5.6	19	72	17	84	59	2	9	28	1.42
105324832--105324899	23	3.0	22	75	12	57	61	0	10	27	1.28
105324864--105324961	5	17.6	5	76	15	61	60	3	15	21	1.49
105324846--105324961	22	5.1	22	74	12	92	61	2	13	22	1.45
105327626--105327849	90	2.5	90	88	2	315	58	10	4	27	1.49
105330191--105330225	18	2.0	18	88	5	54	60	22	0	17	1.37
105334173--105334217	20	2.1	22	84	8	58	33	22	31	13	1.92
105337627--105337665	20	2.0	20	100	0	78	35	12	20	30	1.90
105337716--105337858	24	6.0	23	79	6	144	29	24	19	26	1.98
105337717--105337836	23	5.1	23	81	3	132	29	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105337715--105337837	47	2.6	48	81	3	151	30	24	17	26	1.97
105338051--105338114	31	2.1	31	87	0	92	35	14	23	26	1.93
105342781--105342854	27	2.8	26	78	8	80	43	9	18	28	1.81
105343854--105343888	6	5.8	6	100	0	70	0	0	34	65	0.93
105344012--105344055	18	2.4	18	84	3	52	29	36	13	20	1.91
105348243--105348281	16	2.3	18	86	8	55	79	10	0	10	0.94
105349144--105349200	25	2.3	25	96	3	107	24	19	14	42	1.88
105350316--105350515	41	4.9	40	85	3	249	33	20	24	22	1.97
105350556--105350603	22	2.1	22	84	3	60	50	22	2	25	1.60
105350817--105350870	15	3.7	15	76	16	51	22	1	35	40	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425