Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  170  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51582436--51582511
23
3.4
22
78
10
82
25
23
17
34
1.96
51582450--51582517
22
3.0
21
79
8
73
26
23
16
33
1.95
51582524--51582564
20
2.0
20
90
0
64
29
14
31
24
1.95
51585616--51585717
29
3.5
29
98
0
195
23
23
14
38
1.92
51587023--51587058
18
1.9
18
88
5
54
11
25
0
63
1.27
51589040--51589165
46
2.7
46
92
0
207
21
21
26
30
1.98
51593592--51593910
47
6.8
48
72
16
177
23
27
19
29
1.98
51598994--51599081
43
2.0
43
95
0
158
26
13
25
35
1.93
51599005--51599144
43
3.3
43
83
6
151
28
15
22
33
1.95
51603117--51603185
33
2.1
33
97
0
129
37
14
15
31
1.88
51606166--51606295
40
3.2
40
82
2
145
26
27
20
25
1.99
51606169--51606327
40
4.0
40
80
1
140
27
27
19
26
1.99
51608299--51608434
39
3.5
39
87
2
175
25
30
21
22
1.99
51608279--51608434
78
2.0
77
80
6
172
26
29
21
23
1.99
51615637--51615765
50
2.5
51
93
2
224
34
17
22
25
1.95
51615741--51615858
31
3.8
31
94
0
191
26
20
27
25
1.99
51615880--51616147
49
5.7
49
87
7
303
28
14
26
30
1.95
51615970--51616182
49
4.7
43
88
6
200
28
14
27
29
1.95
51618185--51618234
2
25.0
2
95
0
91
48
0
0
52
1.00
51618410--51618603
39
5.0
40
78
6
159
26
26
22
23
2.00
51622404--51622732
49
6.4
49
83
12
435
30
27
7
34
1.85
51622493--51622524
16
2.0
16
100
0
64
37
25
0
37
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51622493--51622537
18
2.6
18
89
6
67
33
26
0
40
1.57
51622444--51622573
65
2.0
65
98
0
251
31
26
6
35
1.81
51622404--51622622
114
1.9
114
95
1
395
31
26
8
33
1.86
51628015--51628048
16
2.1
17
88
5
52
20
5
0
73
1.04
51629387--51629416
2
15.0
2
100
0
60
50
0
0
50
1.00
51629909--51629944
8
4.2
8
86
13
54
36
0
0
63
0.94
51629910--51629943
18
1.9
17
94
5
59
38
0
0
61
0.96
51636802--51636878
21
3.7
21
94
0
136
11
36
28
23
1.90
51642757--51642813
30
1.9
30
92
0
96
29
15
28
26
1.96
51646376--51646493
43
2.8
42
80
2
137
23
17
26
32
1.97
51646376--51646479
42
2.5
42
82
7
129
25
19
25
29
1.98
51651536--51651821
92
3.1
92
81
7
319
36
18
9
35
1.83
51652303--51652375
19
3.8
18
72
16
67
32
4
2
60
1.30
51652335--51652376
21
2.1
21
91
8
70
26
4
0
69
1.08
51652380--51652434
20
2.8
21
78
10
71
40
0
0
60
0.97
51653576--51653616
2
20.5
2
100
0
82
48
0
0
51
1.00
51654101--51654142
20
2.0
20
86
4
57
57
4
0
38
1.20
51654385--51654414
15
2.0
15
100
0
60
40
0
6
53
1.27
51657909--51657944
14
2.6
14
95
0
63
25
58
16
0
1.38
51659607--51659689
37
2.2
36
83
12
98
33
3
4
57
1.37
51661686--51661710
12
2.1
12
100
0
50
68
8
0
24
1.16
51661978--51662004
12
2.2
12
100
0
54
59
7
7
25
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51662017--51662054
17
2.2
18
86
13
53
73
0
5
21
1.02
51662723--51662754
17
1.9
17
93
6
57
87
3
6
3
0.73
51668051--51668105
23
2.3
23
84
3
74
50
20
7
21
1.71
51668434--51668458
2
12.5
2
100
0
50
48
0
0
52
1.00
51678417--51678626
40
5.2
40
87
2
305
25
24
28
21
1.99
51686551--51686760
40
5.2
40
87
2
305
25
24
28
21
1.99
51688489--51688565
31
2.3
34
87
12
108
37
3
3
54
1.37
51689635--51689680
20
2.3
20
82
14
60
28
28
17
26
1.98
51689647--51689690
19
2.2
20
84
4
54
34
25
18
22
1.96
51690943--51690995
17
2.9
18
77
5
54
58
0
37
3
1.16
51690986--51691034
19
2.9
17
77
16
57
77
0
12
10
0.99
51695640--51695673
16
2.1
17
88
5
52
47
0
26
26
1.53
51698331--51698493
43
3.8
42
80
9
152
32
26
15
25
1.96
51701583--51701630
9
5.4
9
76
14
55
33
2
0
64
1.05
51701585--51701629
16
2.8
16
86
3
54
33
2
0
64
1.06
51702381--51702436
30
2.0
27
82
10
67
39
10
12
37
1.78
51708668--51708770
29
3.6
28
80
5
116
29
33
16
21
1.95
51712666--51712825
75
2.1
75
90
1
250
53
7
8
30
1.59
51713070--51713137
33
2.1
33
85
0
91
27
11
42
17
1.84
51715071--51715106
17
2.1
17
94
0
63
66
5
2
25
1.27
51715088--51715264
99
1.8
96
87
6
266
54
14
1
29
1.47
51715081--51715462
101
3.9
99
79
10
328
56
14
1
28
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51715388--51715539
76
2.0
76
90
1
243
53
16
1
28
1.51
51715949--51715993
17
2.7
17
86
3
56
53
0
2
44
1.13
51717367--51717419
27
2.0
27
88
0
79
35
20
22
20
1.96
51724293--51724402
44
2.4
44
80
7
123
23
30
19
27
1.98
51726436--51726677
80
3.0
80
80
4
242
25
26
22
25
2.00
51726462--51726685
40
5.6
40
81
1
211
25
27
22
24
2.00
51730108--51730177
27
2.5
28
88
2
106
28
14
25
31
1.95
51730108--51730189
27
3.0
27
80
8
103
29
13
23
34
1.93
51738034--51738103
27
2.5
28
88
2
106
28
14
25
31
1.95
51738034--51738115
27
3.0
27
80
8
103
29
13
23
34
1.93
51739652--51739677
12
2.2
12
100
0
52
57
15
11
15
1.65
51753248--51753411
71
2.3
71
100
0
328
18
28
17
35
1.94
51753248--51753445
71
2.8
70
91
3
258
20
28
17
33
1.95
51760823--51760986
71
2.3
71
100
0
328
18
28
17
35
1.94
51760823--51761020
71
2.8
70
91
3
258
20
28
17
33
1.95
51765270--51765316
21
2.2
22
88
11
71
31
51
6
10
1.62
51767437--51767686
88
3.1
76
79
16
241
27
0
16
56
1.44
51767437--51767608
76
2.2
78
83
10
226
26
0
16
56
1.44
51767520--51767686
88
1.9
88
96
0
307
26
0
17
55
1.42
51767682--51767706
13
1.9
13
100
0
50
52
0
0
48
1.00
51767526--51767704
88
2.0
88
91
2
288
27
0
15
56
1.40
51767526--51767900
188
1.9
201
82
13
485
28
0
14
57
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51767610--51767898
104
2.8
103
87
9
425
28
0
14
57
1.38
51767876--51767912
17
2.3
16
90
9
58
32
0
5
62
1.18
51775516--51775596
40
2.0
40
100
0
162
25
9
22
41
1.84
51775734--51775761
2
14.0
2
100
0
56
50
0
0
50
1.00
51776613--51776637
5
5.0
5
100
0
50
80
20
0
0
0.72
51777606--51777849
131
1.9
129
84
5
330
33
12
15
39
1.84
51779942--51780119
40
4.5
40
87
0
241
23
23
26
26
2.00
51781610--51781809
26
7.9
26
72
12
121
62
6
5
26
1.40
51781614--51781679
24
2.7
23
82
15
71
59
3
7
30
1.41
51781646--51781811
50
3.3
50
73
10
149
63
7
4
24
1.40
51781732--51781801
28
2.5
28
83
2
88
64
2
5
27
1.30
51781783--51781865
36
2.4
36
80
13
93
65
6
2
26
1.28
51781922--51781998
25
3.0
26
76
16
88
63
3
5
27
1.33
51782794--51782873
40
2.0
40
95
0
142
36
11
16
36
1.84
51783702--51784079
77
4.8
79
83
7
428
25
8
10
56
1.60
51783754--51784079
162
2.0
162
90
3
512
24
8
10
56
1.60
51783920--51784104
77
2.4
76
91
3
293
28
8
8
54
1.60
51787394--51787433
19
2.1
20
90
9
66
72
0
0
27
0.85
51789514--51789558
22
2.1
22
91
4
74
13
13
8
64
1.49
51791080--51791105
3
8.7
3
100
0
52
69
0
0
30
0.89
51793583--51793653
13
4.9
14
71
21
58
60
4
2
32
1.30
51793586--51793653
28
2.3
29
80
12
77
58
4
2
33
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51793621--51793657
19
1.9
19
89
10
58
54
2
8
35
1.44
51793837--51793966
3
43.3
3
68
13
63
59
1
7
31
1.35
51793853--51793930
29
2.7
29
70
18
72
55
1
11
32
1.44
51793925--51793964
13
3.4
13
80
19
52
72
0
0
27
0.85
51794551--51794609
26
2.3
26
79
2
66
25
10
0
64
1.25
51795733--51796021
87
3.3
87
92
2
467
38
21
14
25
1.92
51795645--51796021
87
4.3
86
86
5
463
35
20
15
27
1.93
51800335--51800465
40
3.3
40
78
2
147
22
27
24
25
2.00
51809056--51809274
80
2.7
80
82
3
262
25
26
22
26
2.00
51809056--51809272
40
5.4
40
83
5
224
24
26
22
26
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425