genome.fa.s8.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  208  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63574064--63574122	24	2.4	24	86	11	84	28	22	22	27	1.99
63574064--63574136	24	3.0	23	86	8	83	27	23	21	27	1.99
63581977--63582043	9	7.0	9	74	12	53	35	13	19	31	1.90
63581993--63582049	11	5.5	11	76	16	68	35	14	19	31	1.91
63581987--63582049	20	3.2	20	95	0	108	34	12	20	31	1.90
63581987--63582063	40	1.9	39	82	10	93	35	12	19	32	1.90
63582095--63582177	25	3.4	25	90	5	134	26	21	21	30	1.99
63582108--63582191	25	3.5	23	86	4	78	25	23	21	29	1.99
63582386--63582449	31	2.1	31	96	0	119	35	15	25	23	1.94
63583412--63583586	40	4.4	40	84	2	228	24	28	21	25	1.99
63584853--63584893	21	2.0	21	85	9	57	36	26	2	34	1.70
63591195--63591369	40	4.4	40	89	2	246	23	27	22	26	1.99
63594293--63594393	28	3.5	30	82	6	118	29	14	26	28	1.95
63594322--63594397	29	2.7	28	76	13	75	30	14	26	28	1.95
63596497--63596608	40	2.8	40	84	1	143	24	23	28	24	2.00
63596497--63596642	40	3.7	38	79	11	134	23	23	26	26	2.00
63598968--63599008	21	2.0	21	85	9	57	36	26	2	34	1.70
63611398--63611467	34	2.1	34	83	5	88	24	20	24	31	1.98
63618245--63618286	19	2.2	19	83	8	50	45	0	21	33	1.52
63618762--63618887	47	2.7	44	80	11	137	28	19	28	23	1.98
63620964--63621506	180	3.0	179	86	2	739	37	9	19	33	1.84
63629051--63629125	38	2.0	37	94	2	132	28	18	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63630314--63630410	40	2.4	40	84	0	122	24	18	24	31	1.97
63630395--63630450	28	2.0	28	89	0	85	28	12	28	30	1.93
63631668--63631722	18	3.0	18	80	19	69	76	1	16	5	1.06
63632881--63632963	29	2.9	29	91	7	141	28	13	31	26	1.94
63632877--63633014	60	2.4	58	80	6	145	28	14	32	24	1.94
63649061--63649139	39	2.0	39	100	0	158	29	12	17	40	1.87
63649436--63649562	44	3.0	43	80	11	134	26	18	27	27	1.98
63649436--63649562	42	3.0	44	81	6	136	26	18	27	27	1.98
63653934--63653963	12	2.5	12	94	0	51	13	10	16	60	1.59
63655626--63655662	16	2.3	16	100	0	74	43	0	16	40	1.48
63660135--63660183	21	2.2	23	89	7	75	32	0	24	42	1.55
63666833--63666947	42	2.7	42	81	4	133	24	19	25	31	1.98
63672605--63672638	18	2.0	16	88	11	50	26	0	41	32	1.56
63673050--63673107	30	2.0	30	86	3	82	46	10	8	34	1.69
63677134--63677180	13	3.8	12	81	18	53	61	0	6	31	1.21
63677137--63677186	23	2.3	22	86	13	68	62	0	6	32	1.20
63679016--63681013	206	9.7	206	94	0	3366	28	24	17	29	1.97
63693102--63693303	89	2.2	93	76	8	202	55	1	7	34	1.38
63693272--63693323	23	2.4	20	84	12	59	61	0	5	32	1.20
63696620--63696817	27	7.3	27	87	2	227	27	23	9	39	1.85
63696634--63696817	54	3.4	54	90	1	271	28	23	8	39	1.84
63696620--63696817	81	2.4	81	88	1	272	27	23	9	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63696809--63696999	27	7.1	26	79	10	147	39	21	9	28	1.86
63696816--63696999	54	3.4	52	80	5	181	40	20	9	28	1.84
63696848--63696998	81	1.9	81	86	5	216	41	21	8	28	1.82
63696846--63697065	27	8.1	27	80	4	181	39	18	10	32	1.84
63697957--63698026	25	2.8	25	84	0	95	25	24	21	28	1.99
63698174--63698309	42	3.2	42	95	0	245	30	15	19	35	1.92
63698331--63698445	31	3.7	31	90	1	178	27	15	26	29	1.96
63699401--63699433	2	16.5	2	100	0	66	48	0	0	51	1.00
63702403--63702569	40	4.2	40	82	2	194	25	27	22	25	2.00
63706726--63706778	27	2.0	27	88	7	81	20	24	22	32	1.98
63710534--63710586	27	2.0	27	88	7	81	16	26	26	30	1.97
63712640--63712807	40	4.2	40	91	1	248	23	21	28	26	1.99
63716121--63716231	27	4.1	26	82	12	116	36	23	23	17	1.95
63716121--63716231	54	2.1	54	86	3	152	36	23	23	17	1.95
63718773--63718832	27	2.2	27	96	0	111	36	21	16	25	1.94
63726273--63726300	14	2.0	14	100	0	56	35	7	7	50	1.57
63727538--63727595	30	1.9	30	92	0	98	27	31	18	22	1.97
63729281--63729404	46	2.7	46	83	7	144	28	19	32	20	1.97
63730161--63730311	74	2.0	74	98	0	293	23	17	33	25	1.97
63730434--63730458	13	1.9	13	100	0	50	40	28	32	0	1.57
63736200--63736364	46	3.5	46	79	12	149	27	16	30	26	1.97
63736248--63736419	47	3.7	48	83	6	178	27	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63737312--63737371	22	2.8	22	87	2	95	10	40	28	21	1.85
63738892--63738968	39	2.0	39	97	0	145	32	18	3	45	1.67
63740433--63740463	16	1.9	16	93	0	53	35	22	0	41	1.54
63740662--63740908	55	4.6	54	77	10	226	21	24	18	35	1.95
63740701--63740898	108	1.8	109	86	6	294	22	25	18	33	1.96
63747938--63747968	16	1.9	16	93	0	53	35	22	0	41	1.54
63747935--63747974	20	2.0	20	85	0	53	37	22	0	40	1.54
63748160--63748413	53	4.8	54	78	10	231	22	24	15	37	1.93
63748207--63748404	108	1.8	109	85	5	285	24	25	15	34	1.95
63751457--63751524	20	3.4	20	95	0	127	17	35	33	13	1.89
63755101--63755321	40	5.6	39	84	6	257	25	25	21	27	2.00
63755101--63755321	119	1.9	119	83	5	295	25	25	21	27	2.00
63763114--63763300	40	4.7	40	91	2	306	25	27	21	24	1.99
63764787--63764953	40	4.2	40	82	2	185	24	26	22	26	2.00
63771653--63771899	39	6.3	39	88	5	306	25	28	23	22	1.99
63771653--63771899	79	3.2	79	87	5	333	25	28	23	22	1.99
63771653--63771905	118	2.2	118	87	5	363	25	28	23	22	1.99
63779894--63780151	40	6.5	40	90	2	369	25	29	22	22	1.99
63786868--63787051	67	2.8	64	76	8	176	30	16	29	23	1.96
63789018--63789170	42	3.6	42	83	6	193	30	13	23	32	1.93
63794552--63794809	40	6.5	40	91	2	378	21	23	29	25	1.99
63805876--63805914	21	1.9	20	84	5	51	28	23	33	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63809301--63809348	23	2.1	23	96	0	87	41	0	8	50	1.33
63811906--63812035	40	3.2	40	82	4	165	23	28	24	23	2.00
63816582--63816668	43	2.0	43	82	12	108	21	19	31	27	1.98
63824900--63824984	27	3.2	26	85	5	98	20	24	21	34	1.97
63832738--63832852	27	4.3	26	80	11	117	22	23	19	34	1.96
63834161--63834229	34	2.0	34	97	0	129	34	5	20	39	1.76
63837666--63837769	42	2.5	42	82	4	113	29	11	26	31	1.92
63843463--63843612	39	3.8	39	96	0	273	20	21	30	28	1.98
63843463--63843643	39	4.6	39	92	1	175	21	22	29	26	1.99
63843463--63843643	78	2.3	78	89	1	247	21	22	29	26	1.99
63851963--63851996	17	2.0	17	100	0	68	41	5	11	41	1.66
63864410--63864470	29	2.2	27	85	5	77	26	14	31	27	1.95
63864410--63864479	27	2.5	28	83	4	79	24	15	31	28	1.96
63869175--63869280	39	2.7	40	85	2	142	28	22	24	24	2.00
63877142--63877269	40	3.2	40	85	0	157	25	21	25	27	2.00
63883936--63884019	29	2.9	29	80	0	96	27	16	27	28	1.97
63883933--63884043	58	1.9	57	83	1	141	26	16	30	27	1.96
63886143--63886305	42	3.8	42	83	5	193	23	15	25	34	1.94
63889951--63890047	33	3.1	33	72	20	91	23	26	22	26	2.00
63890189--63890254	28	2.4	26	71	16	62	42	21	19	16	1.89
63896943--63896986	20	2.3	19	80	7	52	47	2	13	36	1.56
63898933--63899075	39	3.7	39	90	2	234	26	20	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63898934--63899115	77	2.3	79	89	2	269	24	22	29	23	1.99
63906867--63907010	39	3.7	39	90	0	234	26	21	29	22	1.99
63906868--63907050	78	2.3	79	89	1	269	24	22	29	22	1.99
63910676--63910787	27	4.2	26	87	7	152	36	23	24	16	1.94
63910676--63910787	54	2.1	54	89	3	172	36	23	24	16	1.94
63911196--63911236	16	2.5	17	76	11	50	2	24	24	48	1.63
63912220--63912296	24	3.2	24	94	0	127	20	42	3	32	1.70
63930743--63930859	27	4.3	27	88	0	162	27	24	8	39	1.84
63930743--63930859	54	2.2	54	90	0	180	27	24	8	39	1.84
63930858--63931041	27	6.8	27	80	8	205	39	19	9	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425