Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  358  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110622007--110622056
13
3.2
16
70
18
52
48
0
2
50
1.12
110639549--110639635
42
2.1
42
95
0
156
39
25
12
22
1.90
110644895--110645231
24
14.1
24
96
1
579
36
25
17
20
1.94
110651977--110652314
24
14.1
24
96
0
579
36
25
17
20
1.94
110653530--110653554
13
1.9
13
100
0
50
0
12
0
88
0.53
110672287--110672452
35
4.6
35
82
8
172
31
10
24
33
1.90
110672287--110672457
75
2.4
75
85
7
221
31
11
23
33
1.90
110679753--110679879
35
3.5
35
88
5
173
31
9
25
33
1.88
110680447--110680492
24
2.0
22
83
8
56
56
0
10
32
1.34
110681293--110681344
27
1.9
26
85
14
70
23
3
0
73
1.00
110683726--110683776
3
17.0
3
100
0
102
33
0
0
66
0.92
110686001--110686058
19
3.1
19
76
16
57
27
17
22
32
1.96
110686060--110686178
60
2.0
59
83
9
152
27
21
23
27
1.99
110688242--110688312
18
3.9
18
73
14
74
38
16
5
39
1.73
110700162--110700200
21
1.9
19
90
10
60
74
0
25
0
0.82
110702045--110702197
49
3.1
49
85
7
227
45
12
10
32
1.76
110704119--110704172
27
2.0
27
100
0
108
37
14
14
33
1.88
110707862--110707995
47
2.8
47
85
5
171
25
19
29
26
1.99
110719356--110719483
43
3.0
43
77
15
120
24
20
27
28
1.99
110719852--110719889
19
2.0
20
84
5
51
36
5
13
44
1.66
110735067--110735094
2
14.0
2
100
0
56
50
0
0
50
1.00
110737301--110737338
17
2.2
17
90
0
58
26
26
28
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110739975--110740041
32
2.1
32
97
0
125
55
13
23
7
1.63
110741215--110741354
60
2.3
60
85
6
185
27
23
18
30
1.98
110741215--110741315
28
3.5
28
70
19
80
26
25
18
28
1.98
110741344--110741389
20
2.3
20
85
3
67
28
32
17
21
1.96
110743901--110743945
3
15.3
3
95
4
83
64
0
0
35
0.94
110744256--110744359
41
2.5
41
79
1
118
25
15
21
38
1.92
110749131--110749306
46
3.8
46
81
10
232
20
21
29
28
1.98
110749127--110749298
93
1.8
93
96
0
317
20
22
30
27
1.98
110752251--110752319
15
4.6
15
83
0
84
11
17
13
57
1.64
110752242--110752329
30
3.0
30
81
8
99
10
17
15
56
1.66
110754712--110754887
46
3.8
46
81
10
232
20
21
29
28
1.98
110754708--110754879
93
1.8
93
96
0
317
20
22
30
27
1.98
110756961--110757028
30
2.3
30
78
0
73
29
23
16
30
1.96
110762078--110762240
43
3.8
43
82
4
161
26
14
25
33
1.94
110765141--110765201
32
1.9
32
86
0
86
42
11
4
40
1.62
110765997--110766029
16
2.0
17
94
5
59
69
12
0
18
1.18
110766777--110766809
17
1.9
17
88
11
50
15
0
18
66
1.25
110767509--110767671
43
3.8
43
79
5
161
29
15
25
30
1.96
110767514--110767671
86
1.8
84
81
6
192
29
15
25
29
1.96
110770723--110770832
26
4.2
26
94
0
184
33
5
24
36
1.79
110772617--110772902
136
2.1
137
96
0
520
24
18
25
32
1.97
110777855--110778078
40
5.6
40
80
10
237
25
27
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110777857--110778079
79
2.8
80
83
8
285
26
27
21
25
1.99
110777855--110778079
119
1.9
120
81
8
280
26
27
20
25
1.99
110786124--110786159
2
18.0
2
94
0
63
47
2
0
50
1.15
110787291--110787353
31
2.0
31
100
0
126
3
22
6
68
1.27
110798336--110798400
31
2.2
28
89
10
94
41
24
3
30
1.70
110798344--110798406
31
2.0
31
100
0
126
38
28
3
30
1.73
110800661--110800782
54
2.3
54
81
5
140
19
29
19
31
1.97
110803834--110803880
22
2.1
22
100
0
94
36
0
4
59
1.17
110803900--110803947
23
2.1
23
96
0
87
35
16
8
39
1.79
110804526--110804565
21
1.9
21
94
0
71
17
25
15
42
1.88
110817551--110817582
16
1.9
17
93
6
57
43
12
6
37
1.68
110821669--110822457
394
2.0
394
99
0
1560
28
16
17
37
1.92
110824081--110824448
182
2.0
181
94
1
639
26
14
19
39
1.90
110825714--110825740
13
2.1
13
100
0
54
29
7
25
37
1.83
110826458--110826525
34
2.0
34
97
0
127
36
2
27
32
1.72
110827737--110827786
24
2.1
24
96
0
91
12
34
16
38
1.85
110827773--110827831
24
2.6
22
77
12
66
22
33
11
32
1.90
110827851--110827893
9
4.8
9
91
0
68
32
32
23
11
1.90
110827972--110827999
2
14.0
2
100
0
56
50
50
0
0
1.00
110828135--110828196
33
2.0
30
84
9
79
20
17
40
20
1.92
110829292--110829327
2
18.0
2
100
0
72
50
0
0
50
1.00
110830481--110830514
16
2.2
15
89
5
50
41
8
23
26
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110830514--110830603
44
2.0
44
85
8
119
32
2
23
42
1.66
110836389--110836427
21
1.9
21
89
5
62
46
0
23
30
1.53
110836545--110836575
2
15.5
2
100
0
62
48
0
0
51
1.00
110838005--110838067
24
2.6
24
80
9
67
25
4
6
63
1.38
110838026--110838082
24
2.4
24
81
0
69
26
3
8
61
1.42
110838275--110838354
2
41.5
2
75
12
60
38
1
2
57
1.20
110838277--110838394
23
5.0
23
74
15
98
35
3
2
58
1.28
110838505--110838531
2
13.5
2
100
0
54
48
0
0
51
1.00
110838549--110838610
3
20.0
3
80
12
72
30
4
1
62
1.25
110838505--110838596
32
2.8
32
76
20
82
32
5
1
60
1.26
110851024--110851321
49
6.6
44
73
11
208
32
17
21
28
1.96
110851031--110851279
138
1.8
138
94
0
444
32
16
22
28
1.96
110851187--110851685
224
2.2
224
91
0
800
33
19
21
26
1.97
110851469--110851547
41
1.9
41
84
0
104
32
21
18
26
1.97
110853229--110853291
24
2.6
24
80
9
67
25
4
6
63
1.38
110853250--110853306
24
2.4
24
81
0
69
26
3
8
61
1.42
110853414--110853455
2
21.0
2
90
0
66
45
0
4
50
1.23
110853519--110853610
2
48.5
2
74
14
70
40
2
2
55
1.24
110853516--110853596
38
2.2
38
85
10
107
41
2
1
54
1.21
110853513--110853610
29
3.3
29
76
16
87
39
2
3
55
1.27
110854810--110854904
26
3.7
26
86
0
136
25
10
28
35
1.89
110858328--110858395
33
2.1
33
100
0
136
47
17
23
11
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110858842--110859661
130
6.3
131
79
3
821
33
15
12
39
1.84
110858809--110859661
261
3.3
257
81
5
908
33
15
12
39
1.84
110866661--110866755
46
2.0
47
95
2
174
38
25
10
25
1.87
110873857--110873901
22
2.1
22
87
4
65
60
2
0
37
1.09
110874292--110874333
14
3.0
14
85
0
57
40
2
0
57
1.12
110877371--110877407
2
18.5
2
100
0
74
48
0
0
51
1.00
110879314--110879479
35
4.6
35
84
8
192
33
24
10
31
1.90
110879309--110879479
74
2.4
73
83
9
217
33
23
11
31
1.90
110886798--110886963
35
4.6
35
84
8
192
33
24
10
31
1.90
110886793--110886963
74
2.4
73
83
9
217
33
23
11
31
1.90
110897170--110897232
25
2.4
27
76
7
67
52
6
0
41
1.27
110902257--110902298
21
2.0
21
100
0
84
33
9
14
42
1.78
110905955--110906025
24
2.9
25
79
6
83
29
21
14
35
1.92
110905897--110906026
46
2.8
45
83
5
143
30
19
16
33
1.94
110910246--110910290
20
2.2
20
84
7
56
51
0
8
40
1.33
110913507--110913583
40
1.9
40
92
5
129
19
33
18
28
1.95
110914323--110914365
18
2.4
18
92
7
70
55
0
0
44
0.99
110914326--110914362
8
4.4
8
87
12
56
59
0
0
40
0.97
110914395--110914436
19
2.3
18
80
11
50
69
2
23
4
1.20
110921857--110921901
15
3.0
15
81
12
65
57
0
0
42
0.98
110921858--110921908
15
3.4
15
75
20
52
60
1
0
37
1.08
110922782--110922867
44
2.0
43
81
9
102
17
18
25
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110929478--110929524
21
2.2
22
84
3
60
21
36
23
19
1.95
110947222--110947266
22
2.0
22
100
0
90
33
0
4
62
1.15
110947652--110947686
14
2.5
14
90
0
52
31
14
5
48
1.67
110948692--110948724
13
2.5
14
85
14
52
30
0
0
69
0.88
110950769--110950804
2
18.0
2
100
0
72
50
0
0
50
1.00
110953816--110953854
18
2.2
18
86
9
53
61
0
7
30
1.24
110958616--110959078
233
2.0
233
93
0
802
33
22
17
25
1.96
110963317--110963426
40
2.7
41
87
1
159
39
17
21
21
1.93
110963398--110963455
29
2.0
29
90
6
91
43
18
25
12
1.85
110963885--110963919
16
2.2
16
90
5
54
0
11
2
85
0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425