genome.fa.s8.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  147  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44700235--44700341	43	2.5	42	80	3	115	28	14	25	30	1.95
44707496--44707594	43	2.3	42	82	1	126	28	18	24	29	1.98
44707682--44707724	20	2.2	20	86	0	59	32	2	27	37	1.70
44710504--44710537	17	1.9	18	88	5	52	11	38	32	17	1.86
44731215--44731286	26	2.8	26	73	0	63	19	18	23	38	1.93
44739644--44739741	18	5.5	18	90	4	155	38	11	13	36	1.80
44739635--44739741	35	3.0	35	94	4	178	38	10	14	37	1.80
44740047--44740155	21	5.3	21	66	20	61	35	1	0	61	1.13
44740045--44740084	12	3.3	13	80	13	50	30	0	0	70	0.88
44740095--44740201	7	15.7	7	69	18	50	38	4	0	57	1.20
44740534--44740568	3	11.3	3	87	6	52	31	0	0	68	0.90
44740750--44740776	2	13.5	2	100	0	54	48	0	0	51	1.00
44746393--44746482	27	3.3	27	85	3	119	40	17	10	32	1.83
44746393--44746499	54	2.0	54	81	7	128	38	20	10	30	1.86
44746477--44746537	27	2.3	27	79	0	68	32	27	8	31	1.86
44746434--44746619	81	2.3	81	79	1	203	31	23	9	36	1.86
44746488--44746806	54	5.9	54	90	0	440	28	21	8	41	1.83
44746488--44746806	27	11.8	27	85	0	395	28	21	8	41	1.83
44746785--44746897	27	4.2	27	81	8	106	43	22	6	28	1.77
44746785--44746898	54	2.1	54	80	6	124	42	22	6	28	1.77
44746799--44746925	54	2.4	54	81	6	141	44	19	8	27	1.80
44746824--44746943	27	4.4	27	83	4	109	40	18	13	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44750789--44750878	27	3.3	27	85	3	119	40	17	10	32	1.83
44750789--44750895	54	2.0	54	81	7	128	38	20	10	30	1.86
44750884--44751200	27	11.8	27	85	1	395	28	21	8	41	1.83
44751179--44751264	27	3.2	27	86	6	86	41	24	5	27	1.78
44750884--44751200	54	5.9	54	90	0	449	28	21	8	41	1.83
44751193--44751319	54	2.4	53	79	11	141	43	19	9	27	1.82
44751193--44751291	27	3.7	27	87	5	121	45	20	7	27	1.76
44751218--44751337	27	4.4	27	83	4	109	40	18	13	27	1.88
44754958--44755008	14	3.8	13	82	7	57	84	0	13	1	0.71
44754947--44755008	22	2.8	22	80	9	63	83	0	11	4	0.78
44754961--44755008	21	2.3	22	89	7	73	83	0	14	2	0.74
44755925--44756518	119	5.0	119	94	0	983	33	17	18	30	1.94
44756442--44756711	83	3.2	83	92	1	441	32	20	19	27	1.97
44757105--44757202	18	5.5	18	90	4	155	38	11	13	36	1.80
44757096--44757202	35	3.0	35	94	4	178	38	10	14	37	1.80
44757497--44757612	36	3.1	39	73	14	102	34	1	0	62	1.11
44757555--44757661	7	15.7	7	69	18	50	38	4	0	57	1.20
44757563--44757697	21	6.7	21	67	17	65	36	5	0	57	1.23
44757995--44758029	3	11.3	3	87	6	52	31	0	0	68	0.90
44758211--44758239	2	14.5	2	100	0	58	48	0	0	51	1.00
44759177--44759232	26	2.2	26	96	0	103	21	21	8	48	1.77
44764487--44764516	15	2.0	15	100	0	60	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44770490--44770665	46	3.8	46	81	10	232	20	21	29	28	1.98
44770486--44770657	93	1.8	93	96	0	317	20	22	30	27	1.98
44772587--44772926	27	12.6	27	88	2	468	27	24	9	38	1.86
44772635--44772970	81	4.2	80	83	4	244	29	23	8	38	1.85
44772905--44772991	27	3.2	27	80	6	95	40	22	6	29	1.80
44773014--44773084	27	2.6	26	78	10	72	35	22	19	22	1.96
44773024--44773088	27	2.4	27	82	5	78	35	20	23	21	1.96
44774336--44774392	9	5.9	9	73	15	51	35	8	21	35	1.84
44774334--44774396	20	3.2	20	95	0	117	36	12	19	31	1.89
44774451--44774643	24	8.2	24	89	3	286	29	23	20	26	1.99
44774451--44774643	47	4.1	48	89	3	286	29	23	20	26	1.99
44774451--44774643	71	2.7	71	95	0	343	29	23	20	26	1.99
44785961--44786085	42	3.0	42	84	0	169	27	28	30	13	1.94
44788445--44788471	5	5.4	5	100	0	54	22	18	0	59	1.38
44788776--44788854	40	2.0	40	94	0	140	41	15	16	26	1.88
44790865--44791138	38	7.2	37	84	4	314	14	15	25	44	1.85
44790875--44791138	76	3.5	75	84	2	348	14	15	25	44	1.84
44790875--44791133	114	2.3	114	89	2	396	14	15	25	44	1.84
44795762--44795786	12	2.1	12	100	0	50	24	8	8	60	1.52
44797951--44798118	40	4.2	40	77	6	144	23	26	22	26	2.00
44797967--44798116	80	1.9	80	82	8	189	22	27	23	26	2.00
44800218--44800262	21	2.1	21	87	0	63	24	15	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44804811--44804877	21	3.2	21	70	16	57	31	22	11	34	1.90
44815639--44815697	30	2.0	30	86	0	82	40	6	22	30	1.79
44816238--44816398	72	2.2	72	85	4	209	22	14	28	33	1.94
44822082--44822231	67	2.2	67	81	8	171	32	17	28	21	1.96
44822106--44822289	67	2.8	64	77	8	194	29	17	29	22	1.97
44832280--44832326	23	2.0	23	95	0	85	31	8	19	40	1.81
44836760--44836808	13	3.8	13	100	0	98	46	14	0	38	1.44
44862132--44862198	33	2.0	33	94	0	116	40	17	5	35	1.75
44872088--44872210	59	2.0	60	92	6	203	32	19	9	38	1.84
44873606--44873652	24	1.9	25	91	4	78	27	23	14	34	1.94
44878720--44878849	29	4.5	29	86	6	165	31	13	26	28	1.94
44886587--44886686	37	2.7	37	96	0	182	24	33	19	24	1.97
44886830--44887323	48	10.3	48	95	0	846	30	27	7	35	1.83
44890549--44890582	2	17.0	2	93	0	59	52	0	47	0	1.00
44895513--44895703	39	4.8	40	87	0	199	24	31	21	23	1.98
44895549--44895711	39	4.2	39	90	0	245	23	31	20	23	1.98
44903548--44903709	39	4.2	39	91	1	254	24	32	20	22	1.98
44906939--44906992	11	4.7	11	77	6	54	5	1	29	62	1.28
44906939--44906993	23	2.4	24	78	9	60	5	1	29	63	1.27
44910346--44910466	20	6.1	20	67	14	81	39	22	26	11	1.88
44910352--44910466	39	2.9	38	80	11	126	40	22	24	12	1.88
44910352--44910453	39	2.6	40	85	6	136	39	23	26	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44910349--44910486	40	3.5	40	81	8	158	42	21	25	10	1.85
44919041--44919248	40	5.2	40	85	2	258	26	27	21	24	1.99
44924971--44925016	20	2.3	20	92	0	74	43	23	23	8	1.82
44927248--44927309	23	2.6	25	75	14	69	25	30	12	30	1.93
44928827--44928907	30	2.8	29	80	1	90	55	18	4	20	1.61
44932792--44932816	9	2.8	9	100	0	50	36	8	0	56	1.29
44951285--44951327	3	14.0	3	95	4	77	32	0	0	67	0.91
44951629--44951666	17	2.3	17	86	4	51	50	0	2	47	1.15
44951826--44951928	42	2.4	44	77	9	113	37	35	0	25	1.63
44952213--44952247	15	2.3	15	90	0	52	48	31	0	20	1.50
44952394--44952492	38	2.5	39	85	4	128	22	0	28	49	1.50
44952497--44952621	66	1.9	64	91	3	205	16	20	20	42	1.89
44952551--44952633	40	2.0	41	88	2	123	19	22	19	38	1.93
44954175--44954291	35	3.3	35	85	1	162	44	29	11	13	1.80
44956649--44956709	27	2.2	30	80	11	76	31	3	21	44	1.68
44959397--44959421	13	1.9	13	100	0	50	80	0	16	4	0.87
44959477--44959518	21	2.0	21	90	0	66	76	0	23	0	0.79
44961447--44961720	46	6.0	46	92	0	406	38	15	24	21	1.92
44969078--44969113	18	2.0	18	100	0	72	50	16	5	27	1.68
44969246--44969469	39	5.7	39	91	1	315	32	26	20	20	1.97
44974723--44974758	18	2.0	18	94	0	63	47	16	8	27	1.75
44974891--44975107	78	2.8	78	85	5	303	29	27	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44974891--44975085	39	5.0	39	93	2	295	30	27	21	20	1.98
44974891--44975107	117	1.8	119	85	7	309	29	27	22	20	1.98
44977156--44977299	40	3.6	39	85	5	182	22	26	25	25	2.00
44980714--44980858	40	3.6	40	85	4	193	23	26	24	25	2.00
44980678--44980858	40	4.6	40	82	4	188	23	26	24	24	2.00
44982083--44982185	28	3.5	29	85	9	120	30	26	13	30	1.94
44989985--44990085	29	3.5	29	83	6	116	27	26	15	29	1.96
44989984--44990085	28	3.5	29	82	4	116	27	27	15	29	1.96
44993691--44993906	106	2.0	107	96	0	398	38	19	11	30	1.88
44998616--44998703	45	2.0	45	97	0	167	38	23	12	25	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425