genome.fa.s8.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  139  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41862139--41862264	63	2.0	63	92	0	207	23	21	13	41	1.89
41863965--41864946	490	2.0	491	95	0	1761	33	17	17	32	1.93
41868480--41868518	19	2.1	19	100	0	78	35	15	5	43	1.69
41872549--41872604	27	2.1	27	100	0	112	55	0	3	41	1.17
41876203--41876256	27	2.0	27	85	0	72	38	7	14	38	1.75
41883411--41883658	123	2.0	123	92	3	410	26	20	14	38	1.91
41886059--41886230	93	1.8	93	94	0	308	27	29	21	21	1.99
41886052--41886227	46	3.8	46	78	12	207	28	28	21	21	1.98
41889367--41889448	27	3.0	27	90	0	119	40	20	19	19	1.92
41890446--41890839	110	3.6	110	86	2	488	31	23	18	26	1.97
41890435--41890839	220	1.8	220	84	3	546	31	23	18	27	1.97
41903650--41903722	27	2.6	28	86	2	103	27	13	24	34	1.93
41910249--41910376	23	5.5	23	71	12	75	31	20	16	32	1.95
41910252--41910376	24	5.3	24	72	12	66	30	20	16	32	1.94
41917840--41917929	23	4.0	23	70	9	69	23	17	21	37	1.94
41917894--41917949	24	2.4	24	88	5	80	26	17	17	37	1.93
41917908--41917961	24	2.2	24	86	0	72	29	22	14	33	1.94
41920579--41920633	19	2.9	19	75	0	65	21	10	23	43	1.84
41923034--41923070	15	2.3	17	86	9	51	37	0	10	51	1.37
41926022--41926291	48	5.6	48	81	2	283	24	28	19	27	1.98
41926022--41926304	96	2.9	96	82	2	327	26	28	18	26	1.98
41930910--41930956	20	2.3	20	100	0	94	21	25	8	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41931151--41931271	21	5.9	21	75	7	113	47	14	21	17	1.82
41931163--41931271	40	2.6	42	83	8	143	47	12	21	18	1.81
41931420--41931464	17	2.6	17	76	13	56	51	17	0	31	1.46
41932402--41932462	28	2.2	28	85	5	79	27	19	22	29	1.98
41952403--41952570	40	4.2	40	83	3	196	26	27	21	24	1.99
41952403--41952570	80	2.1	80	86	2	230	26	27	21	24	1.99
41952527--41952752	124	1.8	125	84	2	312	33	24	10	31	1.90
41960388--41960553	40	4.2	40	83	6	196	25	28	22	23	1.99
41967493--41967565	29	2.5	29	100	0	146	28	15	28	27	1.96
41967631--41967693	24	2.6	24	97	0	117	20	15	26	36	1.93
41974909--41975129	40	5.6	41	90	5	332	26	27	22	23	2.00
41974909--41975129	79	2.8	80	88	7	319	26	27	22	23	2.00
41977851--41977972	40	3.1	40	78	5	149	29	27	20	22	1.99
41980858--41980989	29	4.6	29	93	0	201	26	32	15	25	1.95
41980829--41980989	58	2.8	58	87	1	189	26	32	16	24	1.96
41980800--41980989	87	2.2	86	83	5	222	25	32	16	25	1.96
41987397--41987579	40	4.6	40	82	5	228	25	23	27	23	2.00
41987397--41987586	79	2.4	79	84	6	233	24	23	27	24	2.00
41995191--41995411	40	5.6	41	81	9	255	25	23	26	24	2.00
41999596--41999767	40	4.3	40	82	7	217	28	26	20	24	1.99
41999596--41999767	80	2.2	79	89	5	258	28	26	20	24	1.99
42003820--42003929	44	2.5	44	85	7	136	25	23	1	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42004360--42004464	27	3.9	27	77	1	95	30	23	16	29	1.96
42007776--42007959	40	4.6	40	80	6	203	26	23	24	25	2.00
42007776--42007959	80	2.3	80	85	1	235	26	23	24	25	2.00
42010805--42010830	11	2.4	11	100	0	52	38	26	0	34	1.57
42014136--42014198	29	2.2	29	85	2	83	25	15	30	28	1.96
42019614--42019722	49	2.2	50	82	9	127	44	11	11	33	1.77
42027146--42027171	13	2.0	13	100	0	52	23	30	30	15	1.95
42046271--42046395	47	2.7	47	91	1	189	32	28	17	21	1.96
42047836--42047915	34	2.4	34	78	4	90	22	21	21	35	1.96
42055069--42055285	40	5.5	40	87	3	298	24	27	22	24	2.00
42058925--42058950	12	2.2	12	100	0	52	50	19	7	23	1.73
42063223--42063429	40	5.2	40	87	4	287	25	26	23	25	2.00
42063979--42064030	22	2.4	22	76	20	56	44	17	3	34	1.67
42077549--42077627	37	2.1	37	97	0	149	35	24	17	22	1.95
42077945--42077981	18	2.1	18	90	10	58	21	27	21	29	1.99
42086717--42086946	46	5.0	46	75	13	181	24	28	17	29	1.97
42090158--42090331	40	4.3	40	82	3	188	28	21	25	24	1.99
42098374--42098540	40	4.1	40	82	2	172	26	21	26	24	1.99
42098372--42098525	41	3.8	40	82	5	175	26	20	27	25	1.99
42098468--42098558	40	2.3	40	81	11	98	31	20	24	23	1.98
42103161--42103269	42	2.6	42	94	0	191	30	15	32	22	1.95
42103275--42103347	27	2.6	28	84	2	103	28	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42114951--42115184	39	6.0	39	88	1	335	23	31	20	24	1.98
42114951--42115184	116	2.0	118	88	1	355	23	31	20	24	1.98
42114956--42115185	77	2.9	78	89	1	336	23	31	20	24	1.98
42124867--42124906	20	2.0	20	100	0	80	20	5	30	45	1.72
42127696--42127802	42	2.5	42	98	0	205	29	14	33	22	1.93
42127811--42127880	27	2.5	28	88	2	106	28	14	25	31	1.95
42147242--42147276	15	2.3	15	95	0	61	25	14	11	48	1.77
42149236--42149361	47	2.7	46	76	16	134	23	25	19	31	1.98
42160141--42160272	29	4.6	29	84	1	149	25	16	32	25	1.96
42167879--42168010	29	4.6	29	84	1	149	25	16	32	25	1.96
42175610--42175741	29	4.6	29	84	1	149	25	16	32	25	1.96
42188593--42188653	26	2.3	26	78	13	63	47	11	9	31	1.72
42188593--42188656	27	2.4	27	75	17	71	46	14	9	29	1.75
42194641--42194872	49	4.7	49	78	4	223	29	25	18	26	1.98
42194645--42194766	50	2.5	49	86	4	156	29	30	15	24	1.96
42198584--42198636	27	2.0	27	88	0	79	35	16	20	26	1.94
42198628--42198760	27	5.0	27	72	7	110	23	15	20	41	1.89
42199091--42199176	36	2.4	36	86	0	118	26	19	9	44	1.81
42199109--42199173	18	3.6	18	87	0	94	29	20	6	44	1.75
42201111--42201426	157	2.0	157	95	0	569	43	21	6	28	1.76
42203368--42203411	22	2.0	22	90	0	70	54	4	0	40	1.21
42203808--42203848	20	2.0	20	100	0	82	29	24	9	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42205480--42205605	53	2.4	53	97	1	234	53	9	20	15	1.69
42207588--42207922	47	7.1	47	90	0	499	33	11	29	26	1.91
42207617--42207688	22	3.1	22	64	24	58	33	13	29	23	1.93
42207893--42208076	98	1.9	96	92	4	307	35	7	26	30	1.83
42207892--42208076	48	3.8	48	89	5	300	35	7	25	31	1.83
42208222--42208292	37	1.9	37	91	5	117	23	18	30	26	1.97
42209560--42209988	199	2.2	198	89	2	666	25	21	27	25	1.99
42209560--42209988	40	10.8	40	89	2	623	25	21	27	25	1.99
42211752--42211874	52	2.3	52	93	4	203	52	9	20	17	1.72
42213846--42214131	47	6.2	47	82	9	320	32	10	29	26	1.90
42213846--42214131	91	3.1	91	85	8	364	32	10	29	26	1.90
42213869--42214131	136	1.9	137	86	6	372	33	11	29	25	1.91
42214138--42214315	48	3.8	48	84	8	249	33	7	26	32	1.85
42214138--42214315	93	1.9	94	87	6	263	33	7	26	32	1.85
42214460--42214530	37	1.9	37	94	0	124	23	19	30	25	1.98
42216015--42216178	71	2.3	71	100	0	328	18	28	17	35	1.94
42216015--42216212	71	2.8	70	91	3	258	20	28	17	33	1.95
42223588--42223750	70	2.3	71	97	2	319	19	28	17	34	1.94
42226051--42226103	22	2.5	22	84	3	63	20	39	24	15	1.91
42236865--42236904	20	2.0	20	85	0	53	37	15	0	47	1.45
42244761--42244883	22	5.3	22	63	18	70	28	30	8	32	1.86
42244733--42244884	47	3.2	47	96	0	277	28	30	6	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42247287--42247825	171	3.2	171	81	6	586	36	18	9	36	1.82
42256435--42256465	6	5.2	6	100	0	62	32	0	67	0	0.91
42263988--42264017	2	15.0	2	92	0	51	46	0	0	53	1.00
42264262--42264330	30	2.3	30	92	0	111	20	23	31	24	1.98
42267124--42267214	40	2.3	40	83	11	107	28	20	18	31	1.97
42269039--42269084	22	2.1	22	95	0	83	43	15	19	21	1.87
42274521--42274551	12	2.6	12	94	0	53	67	0	16	16	1.23
42275090--42275131	21	2.0	21	100	0	84	33	23	23	19	1.97
42276666--42276700	15	2.2	16	90	5	54	82	0	8	8	0.83
42277941--42277978	20	1.9	20	88	0	58	34	2	10	52	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425