genome.fa.s8.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  136  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41000528--41000552	13	1.9	13	100	0	50	60	0	0	40	0.97
41000726--41000755	14	2.1	14	100	0	60	20	6	13	60	1.55
41006037--41006090	18	3.2	18	70	20	62	46	7	0	46	1.31
41006048--41006102	14	3.6	14	73	17	56	41	3	0	54	1.18
41006037--41006102	32	2.1	32	100	0	132	43	6	0	50	1.27
41006107--41006156	18	2.6	19	77	22	52	46	0	2	52	1.12
41006759--41006789	14	2.1	15	94	5	55	38	12	12	35	1.82
41012353--41012393	21	2.0	21	85	0	55	31	24	17	26	1.97
41013509--41013576	20	3.4	21	83	16	83	57	1	2	38	1.23
41013617--41013695	23	3.4	23	82	0	95	36	15	24	24	1.93
41018620--41018792	93	1.9	93	91	2	285	29	28	19	22	1.98
41018613--41018788	46	3.8	46	78	11	198	30	28	18	22	1.97
41023326--41023416	40	2.3	39	83	9	105	20	27	27	24	1.99
41032087--41032184	28	3.4	28	87	7	117	31	13	24	30	1.93
41037399--41037530	29	4.6	29	85	1	167	29	24	15	31	1.95
41037399--41037530	58	2.3	59	88	5	189	29	24	15	31	1.95
41039536--41039638	29	3.6	29	77	7	102	27	30	16	26	1.97
41047581--41047656	29	2.6	28	81	8	73	28	30	17	23	1.97
41049718--41049866	75	2.0	75	97	0	280	36	27	0	35	1.62
41055460--41055544	25	3.2	25	63	18	64	25	24	15	34	1.95
41055307--41055568	54	4.9	54	86	3	321	24	24	16	34	1.95
41055531--41055755	47	4.8	45	71	10	130	22	24	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41055758--41055839	43	1.9	43	82	5	103	26	25	13	34	1.93
41059186--41059230	22	2.0	23	91	8	74	15	33	24	26	1.95
41060318--41060498	48	3.9	47	81	4	190	28	12	24	34	1.92
41066748--41066947	48	4.4	47	79	6	182	27	13	24	35	1.92
41087556--41087613	30	1.9	30	96	0	107	55	10	3	31	1.50
41088056--41088086	2	15.5	2	100	0	62	48	0	0	51	1.00
41088212--41088250	6	6.3	6	96	3	69	48	0	0	51	1.00
41090277--41090303	2	13.5	2	100	0	54	48	0	0	51	1.00
41092760--41092818	31	1.9	31	89	0	91	33	27	11	27	1.92
41092783--41092996	60	3.7	61	74	15	189	31	25	12	30	1.93
41092805--41092912	54	2.0	54	83	3	137	31	25	13	28	1.94
41094364--41094498	56	2.4	56	92	2	218	29	15	24	30	1.96
41096011--41096039	2	14.5	2	100	0	58	0	0	48	51	1.00
41095966--41096110	73	2.0	73	100	0	290	19	1	28	51	1.55
41096084--41096110	2	13.5	2	100	0	54	0	0	48	51	1.00
41100754--41100811	26	2.2	26	96	0	107	39	0	20	39	1.53
41101444--41101579	56	2.4	56	90	2	211	27	16	25	30	1.96
41102650--41102821	85	2.0	85	100	0	344	31	4	22	41	1.74
41107995--41108272	96	2.9	96	79	1	279	25	29	17	27	1.98
41107994--41108326	144	2.3	144	83	3	395	25	27	18	28	1.98
41107994--41108313	48	6.7	48	76	2	221	25	27	18	29	1.98
41110154--41110327	94	1.9	93	95	1	312	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41110147--41110323	46	3.8	46	80	11	216	28	29	21	20	1.98
41110155--41110342	46	4.0	44	71	20	132	28	28	21	21	1.99
41112703--41112790	29	3.0	29	80	8	97	56	15	17	10	1.66
41112703--41112781	15	5.4	15	77	10	83	58	13	17	10	1.63
41112714--41112790	15	5.2	15	75	9	77	55	15	16	11	1.68
41115714--41115885	93	1.8	93	96	0	317	27	29	21	21	1.99
41115706--41115881	46	3.8	46	81	10	223	28	28	21	21	1.98
41117915--41118086	93	1.8	93	96	0	317	27	30	22	20	1.98
41117907--41118082	46	3.8	46	81	10	232	28	29	21	20	1.98
41122263--41122359	38	2.6	38	91	0	149	30	19	19	29	1.97
41126333--41126556	40	5.6	40	76	2	171	25	26	21	27	1.99
41126375--41126554	80	2.2	80	83	1	227	23	26	21	28	1.99
41141958--41142111	40	3.8	40	80	3	166	25	25	22	25	2.00
41141936--41142147	80	2.7	80	82	2	194	24	26	21	27	1.99
41141962--41142149	40	4.7	40	76	0	151	24	25	22	27	2.00
41144349--41144383	17	2.1	17	100	0	70	31	5	17	45	1.71
41144355--41144392	17	2.2	17	90	0	58	28	7	18	44	1.78
41145370--41145540	43	4.0	42	78	13	170	22	18	27	31	1.97
41147819--41147949	42	3.1	41	72	8	111	32	24	13	29	1.94
41147819--41147991	84	2.1	84	80	4	188	32	24	13	29	1.93
41172729--41172822	40	2.3	40	83	3	127	25	12	24	37	1.91
41184640--41184912	46	5.9	46	91	0	377	21	22	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41189078--41189207	29	4.4	29	90	1	188	33	15	22	29	1.94
41189078--41189207	59	2.2	58	88	1	188	33	15	22	29	1.94
41192880--41193151	49	5.7	48	92	2	397	27	29	8	33	1.87
41198974--41199167	29	6.7	29	90	1	298	29	23	13	32	1.93
41198974--41199191	58	3.7	58	85	4	269	28	25	14	31	1.94
41198974--41199191	87	2.5	87	85	5	305	28	25	14	31	1.94
41204409--41204502	29	3.2	29	96	0	170	26	29	15	27	1.96
41204371--41204502	58	2.3	58	83	0	165	25	32	17	24	1.97
41208344--41208368	9	2.8	9	100	0	50	0	8	0	92	0.40
41210310--41210348	19	2.1	19	100	0	78	30	15	10	43	1.80
41211737--41211922	87	2.1	87	86	3	250	29	23	15	31	1.95
41211737--41211898	29	5.6	29	91	2	254	30	21	15	32	1.94
41211737--41211898	57	2.8	58	91	2	254	30	21	15	32	1.94
41219104--41219268	29	5.7	29	92	1	267	29	22	15	32	1.94
41219104--41219268	88	1.9	87	91	1	267	29	22	15	32	1.94
41225120--41225237	43	2.7	43	76	6	132	21	14	23	40	1.90
41226756--41226879	48	2.6	48	88	0	185	27	16	28	28	1.97
41228180--41228355	46	3.8	46	76	11	171	31	28	18	22	1.97
41229774--41229837	31	2.1	31	87	0	92	25	21	14	39	1.91
41230045--41230172	24	5.4	24	91	4	197	31	21	18	28	1.97
41230052--41230172	47	2.6	47	94	0	215	32	19	19	28	1.96
41230052--41230171	23	5.1	23	92	3	186	32	20	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230224--41230288	20	3.2	20	93	0	112	32	21	12	33	1.90
41230224--41230277	11	5.3	11	70	17	53	31	20	12	35	1.90
41232675--41232892	48	4.5	48	78	3	213	27	17	27	27	1.98
41232675--41232890	96	2.2	96	89	1	315	27	18	27	26	1.98
41236949--41236978	16	1.9	15	93	6	51	33	23	0	43	1.54
41237186--41237463	50	5.5	51	77	8	239	32	25	15	26	1.96
41237334--41237463	52	2.5	51	83	6	156	33	27	13	25	1.93
41239628--41239657	14	2.1	14	93	0	51	23	6	6	63	1.43
41241529--41241696	40	4.2	40	85	5	198	26	27	22	23	1.99
41241529--41241696	80	2.1	80	86	4	232	26	27	22	23	1.99
41256080--41256169	34	2.6	35	92	1	146	38	31	12	17	1.87
41258702--41258802	28	3.5	28	86	6	114	28	13	27	29	1.95
41258731--41258802	29	2.5	28	91	6	110	29	13	27	29	1.95
41266495--41266596	28	3.5	28	86	6	116	29	13	27	29	1.94
41266524--41266596	29	2.6	28	91	6	112	30	13	27	28	1.94
41271034--41271241	40	5.2	40	84	0	218	25	22	25	25	2.00
41271035--41271241	80	2.6	80	83	4	247	25	22	26	25	2.00
41279101--41279308	40	5.2	40	84	0	218	25	22	25	25	2.00
41279102--41279308	80	2.6	80	83	4	247	25	22	26	25	2.00
41281157--41281195	16	2.5	15	83	8	51	43	0	2	53	1.14
41281795--41281848	25	2.1	27	83	16	71	29	3	3	62	1.29
41285636--41285887	48	5.5	48	69	14	122	28	27	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41285630--41285887	90	2.8	90	80	5	241	28	27	18	25	1.98
41291262--41291293	2	16.0	2	93	0	55	46	0	0	53	1.00
41291326--41291377	25	2.1	25	85	7	70	67	3	1	26	1.18
41292889--41292921	13	2.5	14	90	9	52	69	0	0	30	0.88
41294677--41294711	17	1.9	19	88	11	56	62	2	5	28	1.32
41295365--41295453	40	2.2	40	82	6	99	59	3	4	32	1.34
41295622--41295705	10	9.2	9	68	12	55	32	1	2	64	1.14
41295617--41295701	36	2.3	37	80	13	95	34	1	2	62	1.16
41295775--41295808	17	2.1	16	88	5	50	35	0	0	64	0.94
41296236--41296294	31	1.9	31	82	0	73	32	16	15	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425