genome.fa.s8.2.7.7.80.10.50.1000.363.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  363  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112086024--112086189	27	6.1	27	91	0	260	36	6	25	31	1.80
112086026--112086216	81	2.3	79	87	3	265	35	6	25	32	1.82
112086125--112086335	27	7.8	26	80	7	140	29	8	25	37	1.84
112086178--112086327	54	2.8	54	77	6	160	27	8	24	39	1.84
112086330--112086400	27	2.6	27	84	0	97	26	25	18	29	1.98
112086632--112086741	54	2.0	54	98	0	211	30	17	16	35	1.92
112087276--112087333	30	1.9	30	100	0	116	27	32	5	34	1.79
112088321--112088507	6	30.3	6	71	17	116	48	13	17	19	1.81
112088342--112088507	31	5.5	31	71	16	143	48	13	18	19	1.81
112088381--112088444	25	2.5	26	85	7	96	48	14	17	20	1.81
112088403--112088485	37	2.2	37	85	4	114	45	16	18	19	1.85
112088440--112088501	25	2.5	25	89	0	88	48	16	17	17	1.82
112088321--112088506	62	3.1	62	82	6	226	48	13	17	19	1.80
112088732--112088783	27	2.0	26	84	3	68	34	21	26	17	1.95
112089020--112089212	27	7.1	27	86	0	251	39	5	22	32	1.76
112089020--112089212	81	2.4	81	86	0	278	39	5	22	32	1.76
112089189--112089304	27	4.3	25	76	10	79	30	8	20	40	1.82
112089288--112089369	27	3.0	27	80	0	92	25	21	20	31	1.98
112090101--112090321	71	3.1	71	90	2	336	26	15	26	31	1.96
112092918--112093018	47	2.1	47	98	0	193	52	13	3	29	1.59
112093017--112093092	38	2.0	38	100	0	152	57	5	7	28	1.49
112093222--112093275	20	2.8	19	81	8	74	35	0	3	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112105352--112105395	12	3.8	12	76	11	56	65	20	6	6	1.39
112105321--112105382	33	1.9	32	87	9	90	62	24	6	6	1.43
112105311--112105395	32	2.6	31	81	7	98	63	23	5	7	1.42
112105360--112105423	22	2.9	22	80	11	76	60	29	3	6	1.36
112105311--112105412	34	3.1	31	78	10	105	61	26	4	6	1.42
112106971--112107006	18	2.0	18	100	0	72	38	16	16	27	1.90
112108407--112108435	14	2.0	15	93	6	51	79	6	13	0	0.93
112109547--112109593	20	2.5	19	80	13	53	72	6	14	6	1.25
112111585--112111630	19	2.4	19	100	0	92	45	32	0	21	1.52
112111581--112111636	19	2.5	23	72	27	66	44	35	0	19	1.51
112112301--112112370	35	2.0	35	97	0	131	25	18	2	52	1.59
112114319--112114368	22	2.2	22	82	10	57	42	2	0	56	1.11
112114324--112114451	65	2.0	65	87	3	186	50	2	1	46	1.24
112114326--112114483	65	2.4	66	82	7	162	49	1	2	46	1.23
112129655--112129691	19	1.9	19	88	0	56	43	2	16	37	1.62
112130305--112130335	2	15.5	2	100	0	62	51	0	0	48	1.00
112131323--112131348	13	2.0	13	100	0	52	61	0	7	30	1.24
112132038--112132150	57	2.0	58	87	1	165	27	19	7	45	1.78
112134584--112134691	26	4.2	26	91	0	180	32	8	24	35	1.85
112136181--112136233	26	2.0	26	85	7	72	37	18	15	28	1.91
112140325--112140432	26	4.2	26	91	0	180	32	8	24	35	1.85
112141920--112141970	25	2.0	25	85	7	68	39	15	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112144476--112144596	47	2.6	47	94	3	212	29	28	19	23	1.98
112144423--112144638	45	4.9	44	81	13	182	29	28	19	22	1.98
112147363--112147411	14	3.4	15	80	8	57	63	14	12	10	1.53
112150368--112150629	45	5.8	46	74	12	227	29	29	19	21	1.98
112150375--112150634	90	2.9	90	92	4	434	29	28	20	21	1.98
112153054--112153113	30	2.0	30	90	0	93	21	25	28	25	1.99
112155066--112155105	18	2.2	19	90	4	64	77	2	12	7	1.07
112163570--112163735	35	4.6	35	82	8	172	31	10	24	33	1.90
112163570--112163740	75	2.4	75	85	7	221	31	11	23	33	1.90
112163721--112164260	270	2.0	270	99	0	1062	32	11	21	34	1.89
112171331--112171496	35	4.6	35	82	8	172	31	10	24	33	1.90
112171331--112171501	75	2.4	75	85	7	221	31	11	23	33	1.90
112184719--112184743	13	1.9	13	100	0	50	16	24	40	20	1.91
112185010--112185050	6	7.0	6	78	15	50	17	2	0	80	0.82
112185008--112185050	13	3.4	12	84	9	50	18	2	0	79	0.85
112190203--112190292	27	3.2	27	78	7	92	33	24	23	18	1.97
112190398--112190462	28	2.3	28	86	0	85	32	10	24	32	1.90
112190554--112190612	27	2.2	27	100	0	118	13	35	23	27	1.92
112201621--112201659	19	2.1	19	85	0	51	71	7	5	15	1.26
112202311--112202375	28	2.3	28	89	0	94	30	7	26	35	1.84
112205681--112205709	15	1.9	15	100	0	58	13	24	6	55	1.63
112206602--112206658	30	1.9	30	89	7	89	22	33	26	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112210986--112211102	40	2.9	40	85	0	108	33	21	21	23	1.97
112211010--112211106	40	2.4	40	91	0	149	26	23	22	26	2.00
112211163--112211267	40	2.6	40	86	0	138	31	21	20	26	1.98
112211367--112211466	40	2.5	40	88	0	155	29	19	21	31	1.97
112210998--112211466	194	2.4	193	83	5	613	30	19	20	29	1.97
112211837--112211888	22	2.4	21	87	3	77	19	0	34	46	1.50
112211832--112211895	29	2.2	28	83	2	83	21	0	31	46	1.52
112211769--112211892	7	17.4	7	72	9	72	25	0	26	47	1.57
112212415--112212493	40	2.0	41	84	2	106	44	17	20	17	1.87
112212664--112212717	18	3.0	18	91	0	90	11	33	0	55	1.35
112215031--112215061	15	2.0	16	93	6	55	51	3	6	38	1.44
112216986--112217098	43	2.6	43	83	2	138	23	12	29	34	1.92
112217121--112217159	15	2.9	14	88	11	55	5	17	33	43	1.72
112225088--112225122	16	2.2	16	94	0	61	42	14	2	40	1.60
112226481--112226514	17	1.9	17	88	5	50	58	2	0	38	1.13
112227258--112227299	12	3.6	12	77	6	50	11	14	4	69	1.34
112228415--112228463	15	3.3	15	79	0	62	38	18	18	24	1.93
112228397--112228466	30	2.3	30	87	0	95	41	18	15	24	1.89
112236850--112236874	6	4.2	6	100	0	50	16	0	0	84	0.63
112238180--112238221	22	1.9	22	85	0	57	50	0	2	47	1.14
112239511--112239545	6	5.8	6	89	0	52	51	25	2	20	1.61
112239511--112239545	18	1.9	18	94	0	61	51	25	2	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112241364--112241407	22	1.9	24	90	9	74	25	20	0	54	1.45
112241837--112241871	2	18.0	2	94	5	63	48	0	0	51	1.00
112242409--112242441	15	2.1	16	88	5	50	42	9	0	48	1.35
112242475--112242522	5	9.6	5	82	13	55	58	2	0	39	1.10
112242475--112242533	21	2.6	23	78	21	70	57	1	0	40	1.09
112242478--112242533	11	5.3	11	75	25	50	57	1	0	41	1.09
112242902--112243081	89	2.0	89	98	0	351	40	17	11	30	1.85
112244815--112244844	3	10.0	3	92	0	51	63	0	33	3	1.11
112248815--112248868	26	2.1	25	86	10	74	74	1	14	9	1.15
112248850--112248902	16	2.8	20	72	21	69	79	1	18	0	0.83
112248815--112248888	25	2.9	25	80	7	78	77	2	13	6	1.08
112249561--112249630	30	2.3	30	97	0	131	35	0	27	37	1.57
112251960--112252017	26	2.2	26	84	0	71	17	25	20	36	1.94
112251971--112252098	25	5.2	25	70	10	84	21	24	20	34	1.97
112252116--112252174	25	2.4	25	77	8	68	30	22	8	38	1.83
112253431--112253470	18	2.3	18	86	4	55	20	45	22	12	1.84
112266001--112266039	19	2.0	20	85	5	53	51	10	0	38	1.36
112269760--112269817	30	1.9	30	89	0	89	20	39	27	12	1.88
112272466--112273181	357	2.0	356	98	0	1396	36	16	16	30	1.91
112274169--112274241	30	2.4	30	93	0	110	17	27	36	17	1.93
112274187--112274251	30	2.2	30	91	0	103	16	27	36	18	1.93
112274560--112274711	20	7.5	21	69	17	74	26	1	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112274650--112274676	14	1.9	14	100	0	54	25	0	0	74	0.83
112274645--112274706	32	1.9	32	83	6	81	25	0	0	74	0.82
112274647--112274711	6	10.0	6	77	12	58	24	0	0	75	0.81
112274639--112274724	39	2.2	40	81	10	97	25	3	1	69	1.11
112274755--112274801	3	15.7	3	100	0	94	31	0	0	68	0.90
112274800--112274831	3	10.7	3	100	0	64	0	0	31	68	0.90
112278649--112278697	10	4.9	10	85	9	64	22	8	2	67	1.28
112281765--112281864	50	2.0	50	98	0	191	33	19	18	30	1.95
112292361--112292405	24	1.9	23	82	13	56	40	20	0	40	1.52
112292855--112292879	10	2.5	10	100	0	50	0	20	0	80	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425