genome.fa.s8.2.7.7.80.10.50.1000.406.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  406  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123907644--123907682	2	19.5	2	100	0	78	48	0	0	51	1.00
123917068--123917101	16	2.2	16	89	5	52	32	0	0	67	0.91
123928595--123928624	3	10.0	3	100	0	60	0	33	0	66	0.92
123929007--123929048	3	14.3	3	95	5	77	69	0	30	0	0.89
123930592--123930797	41	5.0	41	89	4	249	34	21	23	19	1.96
123931027--123931077	15	3.5	15	75	2	50	23	1	27	47	1.63
123933033--123933068	13	2.8	14	84	16	51	27	25	0	47	1.52
123933020--123933060	18	2.2	19	87	12	59	29	24	0	46	1.53
123933183--123933317	39	3.4	38	73	8	101	28	28	20	23	1.99
123933557--123933595	18	2.1	19	90	4	62	48	10	0	41	1.37
123934912--123934964	5	10.0	5	80	11	61	56	1	0	41	1.10
123934911--123934966	12	4.5	12	81	16	69	55	1	0	42	1.10
123936753--123936780	1	28.0	1	100	0	56	0	0	0	100	0.00
123939488--123939523	13	2.8	14	84	16	51	27	25	0	47	1.52
123939475--123939515	18	2.2	19	87	12	59	29	24	0	46	1.53
123939638--123939772	39	3.4	38	73	8	101	28	28	20	23	1.99
123940011--123940049	18	2.1	19	90	4	62	48	10	0	41	1.37
123941373--123941429	5	11.0	5	78	14	62	56	1	0	42	1.10
123941372--123941427	12	4.5	12	81	16	69	55	1	0	42	1.10
123941374--123941429	26	2.2	26	90	6	69	55	1	0	42	1.10
123946051--123946088	18	2.1	19	85	14	53	50	0	18	31	1.47
123947926--123948155	43	5.3	43	94	0	370	30	14	20	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123948323--123948436	45	2.6	45	86	10	148	21	21	29	26	1.99
123949664--123949712	15	3.1	16	80	14	57	65	8	4	22	1.37
123958639--123958672	14	2.4	14	85	14	52	50	0	0	50	1.00
123959704--123959738	12	3.1	12	88	12	56	88	11	0	0	0.51
123962683--123962750	31	2.2	32	89	2	102	20	4	5	69	1.28
123982493--123982528	16	2.2	16	95	0	63	55	0	0	44	0.99
123986273--123986313	2	21.0	2	95	5	75	51	0	48	0	1.00
124001570--124001609	17	2.2	17	86	8	53	62	0	35	2	1.09
124002830--124002881	25	2.1	25	85	7	70	55	3	0	40	1.18
124003943--124003982	8	5.1	8	90	6	64	0	15	0	85	0.61
124003943--124003982	15	2.6	15	92	4	62	0	15	0	85	0.61
124003945--124003985	4	10.5	4	84	5	57	0	17	0	82	0.66
124004113--124004145	12	2.6	13	85	9	50	18	6	12	63	1.48
124005951--124005999	24	2.0	24	100	0	98	40	12	24	22	1.88
124006726--124006838	43	2.6	43	84	2	129	50	11	8	29	1.69
124006764--124006842	23	3.6	23	72	10	83	51	11	5	31	1.59
124006741--124006862	43	2.8	43	87	2	154	50	11	7	30	1.65
124006832--124006873	22	1.9	22	85	9	59	50	9	4	35	1.56
124008421--124008502	21	3.8	21	85	3	83	31	25	26	15	1.96
124008430--124008502	21	3.4	21	92	3	110	31	26	27	15	1.95
124008411--124008515	42	2.5	42	79	3	120	34	22	24	18	1.96
124008887--124008943	15	3.9	15	90	2	89	50	12	0	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124009266--124009295	5	6.0	5	100	0	60	60	0	0	40	0.97
124010382--124010492	42	2.7	41	84	8	136	27	25	15	31	1.95
124010382--124010506	42	3.0	41	76	14	121	29	24	14	31	1.95
124010483--124010589	47	2.3	46	85	3	142	30	23	14	31	1.94
124010615--124010762	31	4.8	31	83	6	183	27	27	18	27	1.98
124010738--124010866	50	2.5	51	87	5	181	27	21	16	34	1.95
124016854--124016890	16	2.3	16	90	0	56	35	8	13	43	1.74
124019218--124019389	93	1.8	93	96	0	317	27	29	21	20	1.98
124019211--124019386	46	3.8	46	79	12	216	28	29	21	20	1.98
124026759--124026927	93	1.8	90	89	3	266	28	30	20	20	1.98
124026857--124026924	20	3.2	20	66	18	57	29	29	20	20	1.98
124026760--124026924	43	3.7	43	76	14	163	29	29	20	20	1.98
124031079--124031172	3	31.3	3	100	0	188	32	0	0	67	0.91
124040292--124040355	31	2.1	31	81	0	74	43	9	14	32	1.77
124044942--124044992	23	2.3	22	86	3	66	39	1	5	52	1.37
124048560--124048587	2	14.0	2	100	0	56	50	0	0	50	1.00
124050112--124050143	16	1.9	17	93	6	57	84	0	15	0	0.63
124053791--124053815	2	12.5	2	100	0	50	48	0	0	52	1.00
124055337--124055398	30	2.1	30	90	0	97	14	29	14	41	1.85
124057709--124057783	32	2.3	32	78	12	82	32	1	4	62	1.22
124059521--124059567	15	3.2	15	77	17	62	34	0	4	61	1.15
124060308--124060346	18	2.2	18	90	4	62	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124061837--124061922	41	2.1	42	95	2	156	32	10	15	41	1.81
124070016--124070473	90	5.1	90	93	0	772	26	23	23	26	2.00
124071646--124072046	51	7.9	51	90	1	516	27	31	17	24	1.97
124072095--124072163	21	3.3	21	93	0	120	47	13	34	4	1.62
124072574--124072645	30	2.3	32	83	11	87	58	2	0	38	1.13
124078968--124079008	21	1.9	22	85	5	57	51	0	14	34	1.43
124088408--124088435	14	2.0	14	100	0	56	35	14	14	35	1.86
124093737--124093805	28	2.5	28	88	6	97	30	27	14	27	1.95
124099693--124100064	82	4.5	82	76	9	292	31	17	21	29	1.96
124099999--124100153	84	1.8	84	84	2	213	31	20	16	30	1.95
124111539--124111587	18	2.6	18	90	6	71	59	6	0	34	1.22
124115005--124115213	43	4.9	44	79	6	207	25	15	25	33	1.95
124115004--124115213	86	2.5	86	83	8	259	26	15	25	32	1.95
124116560--124116665	36	3.0	36	81	1	115	40	16	8	34	1.78
124116594--124116741	18	7.7	19	69	13	81	40	15	10	33	1.82
124116857--124116893	6	6.2	6	100	0	74	51	16	16	16	1.77
124116981--124117005	12	2.1	12	100	0	50	40	20	24	16	1.91
124117190--124117227	20	1.9	20	89	10	60	44	15	0	39	1.47
124118006--124118049	19	2.5	17	85	10	61	0	31	0	68	0.90
124123064--124123099	18	2.0	18	89	10	56	69	0	2	27	1.02
124125481--124125545	23	2.9	22	84	6	78	61	0	1	36	1.05
124125481--124125536	22	2.5	23	85	5	80	60	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124125481--124125546	22	3.0	22	80	14	73	60	0	3	36	1.12
124128028--124128063	18	2.1	18	90	10	58	58	5	0	36	1.22
124130453--124130501	21	2.3	21	92	0	80	42	12	14	30	1.82
124131084--124131142	30	1.9	32	83	13	79	37	3	5	54	1.39
124133401--124133443	10	4.1	11	82	8	54	27	0	0	72	0.85
124133401--124133443	21	2.0	21	90	0	68	27	0	0	72	0.85
124133400--124133454	20	2.8	19	75	8	58	30	0	0	69	0.89
124133408--124133455	20	2.3	21	82	3	62	29	0	0	70	0.87
124136086--124136121	18	1.9	19	88	5	56	55	0	11	33	1.35
124137620--124137653	3	11.3	3	100	0	68	35	64	0	0	0.94
124140492--124140559	33	2.1	32	84	13	86	67	0	0	32	0.91
124141210--124141238	13	2.2	13	100	0	58	37	6	6	48	1.57
124144308--124144418	47	2.4	47	84	6	154	35	23	16	25	1.95
124151550--124151660	47	2.4	47	84	6	154	35	23	16	25	1.95
124155210--124155543	35	9.6	35	84	1	431	30	13	24	30	1.94
124155210--124155544	70	4.8	70	89	3	482	30	13	24	31	1.94
124155210--124155543	104	3.2	104	87	1	454	30	13	24	30	1.94
124155955--124156011	24	2.4	24	84	0	69	33	14	22	29	1.93
124157068--124157194	42	3.0	42	86	6	170	29	26	14	29	1.95
124157153--124157278	47	2.7	46	81	2	153	30	25	15	28	1.96
124157111--124157278	88	1.9	89	81	8	205	29	25	15	29	1.96
124157294--124157439	31	4.7	31	89	3	204	26	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124157449--124157594	50	2.9	50	94	0	256	26	21	17	35	1.95
124161967--124162074	44	2.4	44	85	3	135	30	23	12	33	1.92
124164051--124164107	26	2.2	26	83	0	78	35	14	10	40	1.80
124170495--124170519	12	2.1	12	100	0	50	40	16	16	28	1.89
124174500--124174684	52	3.5	52	83	6	214	31	25	17	24	1.97
124177815--124177860	3	15.3	3	95	0	83	32	2	0	65	1.05
124177936--124178072	21	6.6	21	69	10	66	28	8	3	59	1.43
124178041--124178078	17	2.2	17	90	0	58	31	2	2	63	1.22
124178236--124178265	15	2.0	15	93	0	51	33	10	0	56	1.32
124181346--124181378	2	16.5	2	93	0	57	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425