genome.fa.s8.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  160  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48706190--48706364	59	2.9	60	80	12	139	24	2	16	56	1.54
48706251--48706364	59	1.9	59	90	0	183	23	3	16	56	1.56
48706239--48706403	59	2.8	59	82	5	147	25	3	16	55	1.56
48709228--48709343	42	2.7	43	80	4	137	24	22	27	25	2.00
48709231--48709343	43	2.7	42	75	14	115	24	22	27	25	2.00
48713057--48713196	31	4.5	31	91	0	235	31	25	16	27	1.96
48713416--48713534	25	4.8	25	95	3	206	25	22	26	25	2.00
48714343--48714426	27	3.1	27	86	3	107	21	25	21	32	1.98
48714488--48714573	27	3.1	27	76	17	95	34	9	16	39	1.80
48714586--48714739	27	5.7	27	81	3	159	27	10	21	40	1.86
48714564--48714685	54	2.3	53	84	4	147	31	9	18	40	1.83
48714585--48714764	27	6.7	27	82	6	136	27	8	21	41	1.83
48714755--48714886	27	4.9	27	88	0	147	40	6	21	31	1.78
48714756--48714886	54	2.4	54	83	0	163	41	6	22	30	1.78
48719981--48720005	9	2.8	9	100	0	50	52	0	24	24	1.48
48721076--48721146	33	2.2	33	97	0	133	36	8	26	28	1.86
48723715--48723748	13	2.6	13	100	0	68	0	14	38	47	1.45
48737564--48737609	24	1.9	24	86	8	67	17	39	19	23	1.92
48738072--48738171	36	2.8	36	92	0	155	26	6	20	48	1.72
48740741--48740802	22	2.7	23	73	16	65	56	4	1	37	1.30
48742510--48742544	17	2.1	17	89	10	54	68	2	0	28	1.04
48742922--48742996	22	3.4	22	70	7	80	30	0	13	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48742906--48742996	44	2.1	44	95	0	164	34	1	13	51	1.48
48743829--48743865	2	18.5	2	100	0	74	51	0	0	48	1.00
48744392--48744429	18	2.1	18	90	9	60	60	0	5	34	1.19
48744451--48744499	24	2.0	24	100	0	98	34	0	8	57	1.29
48745662--48745724	29	2.3	27	86	10	92	47	9	1	41	1.45
48748851--48748889	20	2.0	20	85	10	53	35	20	0	43	1.52
48751331--48751498	40	4.2	40	80	3	196	25	22	27	25	2.00
48759268--48759475	40	5.2	40	85	2	258	25	21	26	26	1.99
48766005--48766164	42	3.8	42	83	4	198	28	13	25	32	1.93
48766005--48766164	85	1.9	83	85	5	223	28	13	25	32	1.93
48767594--48767683	37	2.5	37	83	8	105	44	25	10	20	1.82
48768391--48768438	23	2.1	23	81	11	55	60	27	0	12	1.32
48781326--48781477	40	3.8	40	86	5	191	25	27	23	23	2.00
48783330--48783394	27	2.4	26	78	19	71	47	13	3	35	1.59
48783335--48783394	25	2.3	26	81	16	70	48	13	3	35	1.59
48786149--48786193	19	2.4	19	85	7	56	64	4	0	31	1.13
48789233--48789270	20	1.9	20	94	0	67	71	2	5	21	1.19
48789286--48789323	13	2.8	13	88	4	58	44	13	0	42	1.43
48792672--48792774	37	2.8	37	96	0	188	24	32	20	23	1.98
48792944--48793399	48	9.5	48	96	0	768	29	28	8	33	1.86
48796541--48796600	15	4.1	14	78	18	61	75	0	1	23	0.90
48796540--48796602	10	6.9	9	78	20	60	76	0	1	22	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48796539--48796595	29	1.9	29	89	10	89	75	0	1	22	0.90
48796540--48796604	25	2.7	23	82	17	78	75	0	1	23	0.89
48796539--48796602	30	2.1	30	86	11	87	76	0	1	21	0.87
48808803--48808840	20	1.9	20	94	0	67	71	2	5	21	1.19
48812306--48812629	50	6.4	50	84	4	323	33	26	16	23	1.96
48812306--48812631	101	3.2	100	80	5	343	33	26	16	23	1.96
48812345--48812629	151	1.9	152	83	2	376	32	25	17	23	1.96
48817311--48818260	484	2.0	484	91	0	1526	27	25	15	30	1.96
48819591--48819814	50	4.5	51	79	8	228	31	25	16	25	1.97
48819640--48819823	101	1.8	101	84	6	257	31	25	17	26	1.97
48822995--48824610	806	2.0	806	92	0	2714	25	31	17	25	1.97
48835493--48835521	13	2.2	13	100	0	58	31	0	13	55	1.39
48843292--48843322	15	2.1	15	93	0	53	19	0	25	54	1.44
48843872--48843967	45	2.1	45	92	0	156	23	13	26	36	1.92
48843884--48843982	45	2.2	45	87	3	137	27	15	26	31	1.95
48845841--48845865	3	8.3	3	100	0	50	36	0	0	64	0.94
48846574--48846642	34	2.0	34	97	0	129	27	17	14	40	1.88
48853371--48853402	15	2.1	15	100	0	64	6	40	12	40	1.68
48864254--48864432	94	1.9	94	97	2	342	39	15	13	31	1.86
48866653--48866692	15	2.7	15	92	7	64	55	7	17	20	1.66
48878434--48878480	24	2.0	24	87	8	69	17	14	34	34	1.90
48884568--48884597	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48884890--48884966	39	2.0	39	94	0	136	36	20	6	36	1.79
48891112--48891142	15	2.1	15	93	0	53	41	16	22	19	1.89
48899303--48899346	6	7.3	6	100	0	88	18	0	50	31	1.47
48900684--48900809	51	2.5	51	82	0	171	42	13	5	38	1.68
48905777--48905902	51	2.5	51	81	0	162	41	13	6	38	1.70
48906439--48906465	2	13.5	2	100	0	54	51	0	0	48	1.00
48906752--48906791	21	1.9	21	84	0	53	32	20	2	45	1.64
48906761--48906817	21	2.8	19	86	10	69	28	15	5	50	1.65
48906780--48906846	28	2.4	28	82	0	80	26	19	4	49	1.67
48908165--48908215	25	2.0	25	84	0	66	41	11	7	39	1.71
48909455--48909479	11	2.3	11	100	0	50	64	0	28	8	1.22
48910977--48911146	63	2.7	63	80	3	180	35	28	7	28	1.85
48917737--48917787	23	2.2	23	96	0	93	49	9	7	33	1.65
48918940--48918982	22	2.0	22	90	9	70	41	18	23	16	1.89
48921846--48921927	36	2.2	36	95	2	146	30	4	15	48	1.66
48924875--48924923	21	2.3	22	82	13	66	42	2	0	55	1.11
48929086--48929117	15	2.0	17	88	11	50	43	31	0	25	1.55
48931170--48931338	40	4.2	40	80	4	173	23	26	21	28	1.99
48939191--48939359	40	4.2	40	80	4	173	23	26	21	28	1.99
48946715--48946806	39	2.3	39	88	1	139	22	15	4	57	1.55
48954623--48954677	6	9.5	6	88	11	71	72	10	0	16	1.11
48956303--48956336	18	1.9	17	94	5	59	58	2	11	26	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48956341--48956409	34	2.0	34	86	10	97	71	2	5	20	1.20
48956358--48956395	20	1.9	19	89	5	58	71	0	5	23	1.07
48959270--48959314	19	2.3	20	85	7	58	44	13	17	24	1.85
48966074--48966112	20	2.0	20	89	0	60	48	2	12	35	1.55
48971407--48971440	16	2.1	16	94	0	59	41	26	23	8	1.83
48971657--48971759	28	3.7	28	88	3	145	22	15	35	26	1.94
48975458--48975568	47	2.4	47	84	6	154	25	16	23	35	1.95
48976822--48976876	24	2.3	24	96	0	101	32	7	21	38	1.81
48976931--48976962	13	2.5	13	100	0	64	18	18	25	37	1.94
48982348--48982404	30	1.9	29	89	3	87	12	22	36	28	1.90
48985619--48985665	13	3.5	13	82	2	58	25	2	2	70	1.10
48986944--48986968	11	2.3	11	100	0	50	68	8	8	16	1.38
48989314--48989456	50	2.8	50	87	3	189	25	20	25	28	1.99
48991151--48991318	40	4.2	40	76	2	160	26	26	22	25	2.00
48995594--48995623	12	2.5	12	94	0	51	83	0	6	10	0.81
48996024--48996056	6	5.7	6	96	3	59	18	0	12	69	1.18
48996050--48996080	4	7.8	4	100	0	62	22	0	0	77	0.77
48996017--48996080	12	4.5	14	83	16	55	20	0	6	73	1.04
48996096--48996153	24	2.4	24	85	0	71	12	8	1	77	1.06
48996049--48996144	16	5.9	15	72	17	50	17	6	3	72	1.18
49004660--49004746	43	2.0	43	90	0	138	33	21	24	20	1.97
49006109--49006201	36	2.6	36	87	0	123	37	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49006109--49006206	18	5.4	18	81	0	106	37	14	11	36	1.82
49007510--49007611	29	3.5	28	76	7	89	27	34	17	20	1.95
49015365--49015466	29	3.5	28	76	7	89	27	34	17	20	1.95
49017125--49017170	18	2.5	19	82	10	60	34	8	15	41	1.78
49017324--49017415	44	2.1	44	83	4	114	35	21	19	22	1.96
49017512--49017549	20	2.0	20	89	5	60	44	10	2	42	1.52
49017951--49017985	11	3.1	11	95	4	61	0	45	2	51	1.16
49018167--49018234	16	4.1	16	70	21	50	45	5	1	47	1.36
49018316--49018343	13	2.2	13	100	0	56	21	0	0	78	0.75
49019855--49019972	43	2.8	42	75	15	109	22	18	27	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425