genome.fa.s8.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  140  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42279606--42279673	28	2.5	27	92	4	111	44	26	10	19	1.82
42293040--42293215	40	4.4	40	94	2	286	24	22	28	23	1.99
42302250--42302402	39	3.9	39	92	0	252	23	20	32	23	1.98
42302251--42302432	39	4.6	39	89	0	247	23	21	31	23	1.98
42304316--42304451	39	3.5	40	92	4	215	24	22	29	23	1.99
42311179--42311303	6	20.3	6	70	16	87	48	13	19	19	1.81
42311188--42311303	31	3.5	31	76	13	124	48	12	19	18	1.81
42311190--42311303	37	3.2	36	78	14	130	48	13	19	19	1.81
42311422--42311481	27	2.3	26	85	2	75	36	20	21	21	1.95
42311529--42311579	27	1.9	26	88	4	75	37	17	25	19	1.94
42311816--42312116	27	11.1	27	85	0	314	43	7	19	29	1.79
42311841--42312161	81	4.0	80	79	6	270	41	8	19	30	1.81
42316449--42316560	27	4.1	27	85	5	129	35	21	23	19	1.96
42316449--42316560	54	2.1	54	84	3	145	35	21	23	19	1.96
42319633--42319695	30	2.1	30	82	5	74	17	19	14	49	1.80
42322155--42322184	11	2.7	11	100	0	60	46	10	16	26	1.78
42326671--42326834	29	5.7	29	94	0	274	32	15	22	29	1.95
42330171--42330337	40	4.2	40	79	6	169	25	21	27	25	1.99
42333456--42333635	45	3.9	46	82	10	226	21	21	29	27	1.98
42333456--42333630	46	3.8	45	81	10	196	21	22	29	27	1.99
42335188--42335253	23	2.8	23	86	6	89	31	15	25	27	1.95
42335196--42335263	23	3.0	22	83	8	93	32	16	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42335196--42335302	45	2.3	45	82	7	126	36	16	21	25	1.94
42335198--42335301	23	4.5	24	79	8	92	37	17	21	24	1.94
42344189--42344229	15	2.7	16	79	20	52	60	4	0	34	1.18
42344196--42344231	17	2.2	16	90	9	56	63	5	0	30	1.17
42344215--42344483	97	2.9	93	78	9	285	53	15	1	28	1.49
42344650--42344687	11	3.4	11	82	17	51	0	21	0	78	0.74
42344645--42344686	22	1.9	23	90	9	70	0	21	0	78	0.75
42345809--42345876	34	2.0	35	85	2	93	69	0	30	0	0.89
42346015--42346046	11	2.8	12	90	9	50	37	0	0	62	0.95
42346118--42346149	12	2.7	12	95	0	55	31	0	6	62	1.20
42346027--42346322	92	3.1	92	76	12	301	30	0	13	55	1.44
42346132--42346544	105	4.0	101	83	10	521	31	0	13	54	1.43
42346508--42346542	15	2.2	17	90	10	56	31	0	8	60	1.27
42348369--42348488	33	3.6	33	76	4	116	19	44	10	26	1.82
42351180--42351279	38	2.6	39	84	7	125	31	22	26	21	1.98
42360171--42360308	40	3.5	40	92	3	217	23	28	23	24	2.00
42363798--42363952	38	4.1	39	87	6	239	25	30	23	20	1.99
42363810--42363952	75	1.9	74	92	1	241	24	29	23	22	1.99
42367273--42367460	29	6.5	29	74	3	164	29	36	15	18	1.92
42367293--42367458	86	1.9	86	92	2	280	30	34	16	18	1.93
42369473--42369648	46	3.8	46	80	10	223	20	21	29	28	1.98
42369469--42369640	93	1.8	93	94	0	308	20	21	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42372439--42372597	39	4.1	39	90	0	257	25	30	23	21	1.99
42374526--42374938	205	2.0	205	96	0	763	46	20	9	24	1.79
42376152--42376187	15	2.3	15	90	4	54	52	19	0	27	1.46
42376161--42376190	15	2.0	15	100	0	60	53	20	0	26	1.46
42377610--42377761	45	3.4	45	95	1	261	21	19	16	42	1.89
42377655--42377724	21	3.2	21	62	18	52	20	20	14	45	1.85
42377595--42377811	45	4.8	44	81	8	188	22	18	16	42	1.89
42377595--42377811	90	2.4	90	82	5	260	22	18	16	42	1.89
42390137--42390163	11	2.5	11	100	0	54	59	0	0	40	0.98
42396941--42397068	40	3.2	40	83	5	152	22	21	29	26	1.99
42406374--42406541	40	4.2	40	80	12	175	23	22	27	26	1.99
42406374--42406541	80	2.1	79	86	4	230	23	22	27	26	1.99
42412027--42412189	42	3.9	42	82	6	179	30	17	23	28	1.97
42412989--42413013	12	2.1	12	100	0	50	36	32	32	0	1.58
42423846--42423915	27	2.5	28	93	2	115	30	14	25	30	1.95
42433163--42433249	42	2.1	42	84	4	113	31	12	24	32	1.92
42434370--42434470	50	2.0	50	90	0	157	17	21	27	32	1.96
42450836--42450897	25	2.5	24	78	19	65	35	17	24	22	1.95
42464391--42464438	20	2.4	19	80	10	51	35	10	8	45	1.68
42467912--42468087	46	3.8	46	81	10	232	20	21	29	28	1.98
42467908--42468079	93	1.8	93	96	0	317	20	22	30	27	1.98
42471041--42471109	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42471032--42471119	30	3.0	30	81	8	99	10	17	15	56	1.66
42473503--42473678	46	3.8	46	81	10	232	20	21	29	28	1.98
42473499--42473670	93	1.8	93	96	0	317	20	22	30	27	1.98
42478192--42478358	40	4.2	40	82	2	185	24	26	22	26	2.00
42486404--42486554	40	3.8	40	77	13	141	25	24	27	22	2.00
42486441--42486570	40	3.2	40	81	2	163	23	23	28	24	2.00
42494402--42494552	40	3.8	40	79	6	155	26	23	27	22	2.00
42496126--42496176	15	3.3	15	74	15	59	78	3	13	3	1.03
42496128--42496219	10	9.0	10	73	16	73	77	2	17	3	1.01
42496127--42496219	31	3.0	30	85	13	118	77	2	17	3	1.00
42496127--42496219	32	3.0	31	86	10	120	77	2	17	3	1.00
42499889--42499923	18	1.9	18	88	11	54	20	2	20	57	1.54
42500558--42500735	45	4.0	45	77	7	170	25	16	25	33	1.96
42510665--42510800	45	3.0	45	85	1	157	23	16	26	33	1.95
42512573--42512667	46	2.0	47	84	6	122	31	8	11	48	1.69
42512757--42512793	16	2.5	14	84	16	56	35	18	16	29	1.93
42512763--42512799	16	2.3	16	95	0	65	35	21	18	24	1.96
42521867--42521911	13	3.3	13	79	11	54	64	0	28	6	1.19
42522525--42522549	6	4.2	6	100	0	50	16	0	0	84	0.63
42523222--42523286	21	3.2	21	74	12	73	41	21	24	12	1.87
42523204--42523304	39	2.6	39	95	0	175	37	23	25	12	1.91
42529573--42529610	17	2.2	18	90	4	60	76	2	2	18	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42541223--42541276	2	27.0	2	92	7	92	50	0	48	1	1.11
42542412--42542454	18	2.4	18	96	0	77	37	13	20	27	1.91
42542961--42543041	32	2.5	32	90	4	128	27	1	19	51	1.54
42543983--42544019	19	1.9	19	88	0	56	29	5	21	43	1.75
42543994--42544081	46	2.0	45	82	6	108	31	7	17	43	1.77
42544532--42544567	14	2.6	14	90	0	54	30	22	5	41	1.76
42546340--42546401	31	2.0	31	93	0	106	20	20	4	53	1.64
42547867--42547944	37	2.2	35	80	11	86	46	1	6	46	1.36
42549012--42549048	2	18.5	2	100	0	74	48	0	0	51	1.00
42549094--42549139	17	2.8	17	75	24	53	69	2	6	21	1.22
42551193--42551233	20	2.0	20	100	0	82	41	19	9	29	1.83
42551368--42551413	24	2.0	24	86	4	67	54	10	2	32	1.47
42551801--42551853	3	17.7	3	100	0	106	67	0	0	32	0.91
42558891--42559493	69	8.8	69	77	3	444	22	19	22	36	1.95
42558949--42559321	206	1.8	207	81	1	471	22	18	21	38	1.94
42558945--42559479	275	1.9	276	80	3	612	22	19	21	36	1.95
42571674--42571886	93	2.3	93	89	0	327	46	15	22	16	1.84
42575806--42575869	32	2.0	32	100	0	128	34	15	15	34	1.90
42583983--42584018	18	2.1	18	89	5	56	38	0	0	61	0.96
42586054--42586121	32	2.2	32	97	2	129	35	8	17	38	1.81
42586541--42586570	15	2.0	15	93	0	51	36	6	0	56	1.26
42587578--42587717	72	1.9	72	98	0	271	30	27	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42589000--42589176	40	4.5	40	92	3	288	24	28	23	23	2.00
42589000--42589176	79	2.2	80	92	4	288	24	28	23	23	2.00
42596967--42597104	40	3.5	40	95	3	235	23	28	23	23	2.00
42603331--42603540	40	5.2	40	87	2	305	25	24	28	21	1.99
42607180--42607314	50	2.7	50	81	3	155	29	23	18	28	1.98
42607184--42607372	100	1.9	101	86	1	272	30	24	17	26	1.98
42607621--42607674	27	2.0	27	85	0	72	38	14	7	38	1.75
42610676--42610846	93	1.8	93	93	0	297	28	29	21	21	1.98
42610668--42610843	46	3.8	45	80	7	210	28	28	20	21	1.98
42622992--42623076	43	2.0	43	97	0	161	34	28	17	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425