genome.fa.s8.2.7.7.80.10.50.1000.294.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  294  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91276435--91276612	80	2.2	80	83	3	216	25	26	21	25	2.00
91276815--91276849	17	2.1	17	100	0	70	22	37	22	17	1.94
91279425--91279486	21	2.9	19	76	19	54	66	0	4	29	1.12
91279528--91279557	14	2.1	14	93	0	51	70	0	0	30	0.88
91279587--91279627	18	2.3	18	95	0	73	58	0	9	31	1.31
91279976--91280050	14	5.3	14	73	10	55	64	0	4	32	1.12
91280032--91280066	18	1.9	18	88	11	54	65	0	8	25	1.21
91289221--91289269	24	2.0	24	100	0	98	20	12	20	46	1.82
91291715--91291759	22	2.0	22	87	8	65	31	2	26	40	1.68
91295356--91295390	14	2.5	15	86	13	56	20	14	17	48	1.81
91301718--91301889	93	1.8	93	92	0	290	29	29	20	20	1.98
91301711--91301886	46	3.8	46	77	12	189	30	29	20	19	1.97
91301762--91301905	46	3.1	44	75	15	132	29	27	20	22	1.98
91304766--91304805	17	2.3	18	82	4	55	22	30	35	12	1.91
91306154--91306199	17	2.7	18	90	10	78	8	13	0	78	0.97
91306805--91306846	16	2.6	16	71	14	50	30	0	2	66	1.04
91311444--91311473	4	7.5	4	92	0	51	56	0	0	43	0.99
91315552--91315603	26	2.0	26	100	0	104	23	23	11	42	1.86
91315708--91315746	2	19.5	2	100	0	78	48	0	0	51	1.00
91316223--91316249	2	13.5	2	100	0	54	48	0	0	51	1.00
91319388--91319434	3	15.7	3	100	0	94	65	0	0	34	0.93
91328306--91328375	37	1.9	36	85	8	97	51	5	1	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91332060--91332098	2	19.5	2	100	0	78	48	0	0	51	1.00
91353946--91353978	3	11.0	3	93	0	57	33	0	3	63	1.10
91355647--91355816	47	3.6	45	73	17	134	28	18	30	23	1.98
91355647--91355818	94	1.8	94	86	5	249	27	18	30	23	1.98
91363332--91363590	46	5.5	46	77	11	224	27	18	31	23	1.97
91363329--91363598	94	2.9	96	81	10	310	25	19	31	22	1.98
91367032--91367122	37	2.4	37	83	8	105	16	9	40	32	1.81
91369756--91369787	8	4.0	8	100	0	64	25	0	12	62	1.30
91371428--91371585	42	3.7	42	80	5	174	31	25	13	30	1.93
91371428--91371585	85	1.9	84	85	6	221	31	25	13	30	1.93
91385030--91385128	27	3.7	27	79	5	110	36	16	18	29	1.92
91385131--91385285	54	2.9	52	82	8	172	44	16	7	30	1.76
91385121--91385321	27	7.5	27	79	7	142	40	17	9	31	1.83
91385269--91385343	27	2.8	27	83	4	80	37	21	12	29	1.89
91385581--91385660	41	2.0	41	94	0	142	18	22	31	27	1.97
91385804--91385859	22	2.5	22	77	11	69	21	25	17	35	1.95
91388471--91388731	140	1.9	140	91	0	432	24	18	25	31	1.98
91391844--91391956	43	2.7	41	76	10	111	28	24	16	30	1.97
91404251--91404414	71	2.3	71	100	0	328	18	28	17	35	1.94
91404251--91404448	71	2.8	70	91	3	258	20	28	17	33	1.95
91410860--91411023	71	2.3	71	100	0	328	18	28	17	35	1.94
91410860--91411057	71	2.8	70	91	3	258	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91418627--91419058	47	9.3	47	90	1	674	28	28	8	33	1.87
91418628--91419058	93	4.6	94	91	2	692	28	28	8	33	1.87
91418627--91419058	140	3.1	140	92	2	717	28	28	8	33	1.87
91421931--91422028	28	3.5	28	68	5	90	27	33	19	19	1.96
91421927--91422057	56	2.3	56	92	0	235	29	32	19	19	1.96
91421959--91422056	28	3.5	28	67	10	83	29	29	20	20	1.98
91422043--91422094	25	2.1	25	85	7	70	26	30	13	28	1.94
91422263--91422443	39	4.6	40	94	4	314	25	27	24	22	2.00
91422263--91422443	79	2.3	79	94	4	312	25	27	24	22	2.00
91422510--91422621	38	2.9	38	83	0	116	25	27	16	30	1.97
91424565--91425820	47	26.3	47	85	6	1532	28	28	8	34	1.86
91424873--91424947	22	3.3	22	68	14	71	26	30	10	32	1.90
91424565--91425820	141	9.1	141	87	5	1798	28	28	8	34	1.86
91425129--91425278	25	6.3	25	63	18	77	31	28	5	35	1.79
91425142--91425275	71	1.9	72	90	4	218	29	29	5	35	1.81
91425093--91425322	118	1.9	119	89	2	356	30	28	6	34	1.83
91429300--91429337	19	2.0	20	85	15	53	39	23	0	36	1.55
91429566--91429735	92	1.8	93	93	1	297	28	27	21	22	1.99
91429558--91429732	46	3.8	46	76	14	198	29	27	21	22	1.99
91430158--91430217	30	2.0	30	90	0	93	30	25	8	36	1.85
91433580--91433620	20	2.0	20	86	9	57	36	0	14	48	1.44
91433834--91433858	8	3.1	8	100	0	50	48	0	16	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91438826--91438865	20	2.0	21	85	5	55	42	0	20	37	1.52
91439526--91439842	49	6.7	48	76	10	235	28	19	27	24	1.99
91439526--91439844	93	3.4	96	79	9	318	28	19	27	24	1.99
91444363--91444401	14	2.8	14	92	0	60	23	10	10	56	1.63
91445113--91445149	18	2.0	19	89	5	58	18	8	0	72	1.08
91452623--91452661	14	2.8	14	88	0	60	20	12	12	53	1.71
91455919--91456036	48	2.5	48	83	8	136	28	16	27	27	1.97
91456009--91456186	93	1.9	96	84	5	245	24	19	28	27	1.98
91455919--91456180	142	1.9	138	83	6	339	26	17	27	27	1.98
91455919--91456186	49	5.7	48	76	8	167	26	18	27	27	1.98
91460602--91460758	43	3.7	43	75	7	149	25	17	25	31	1.97
91461962--91462018	29	1.9	29	86	10	80	21	26	33	19	1.97
91469405--91469517	56	2.0	56	94	0	199	41	23	13	22	1.88
91471092--91471195	42	2.5	42	75	7	111	26	17	20	35	1.94
91473967--91474155	88	2.2	87	88	4	274	33	14	25	26	1.94
91473967--91474155	29	6.5	29	90	5	265	33	14	25	26	1.94
91481779--91481967	29	6.5	29	90	5	265	26	25	14	33	1.94
91487497--91487653	43	3.7	43	82	5	176	26	15	24	33	1.95
91487497--91487653	85	1.9	85	82	4	201	26	15	24	33	1.95
91493726--91493875	43	3.5	43	76	9	146	26	18	24	31	1.97
91496282--91496319	20	1.9	20	88	0	58	36	2	10	50	1.51
91500852--91501267	47	8.9	47	94	0	706	34	8	28	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91500996--91501071	22	3.3	22	66	16	64	32	10	30	26	1.90
91500852--91501600	141	5.4	141	77	13	802	34	8	28	28	1.87
91501112--91501189	25	3.2	25	64	10	72	35	5	26	32	1.79
91501231--91501298	31	2.2	31	97	0	127	32	10	32	25	1.89
91501184--91501345	78	2.1	78	90	0	252	33	9	30	26	1.89
91501262--91501600	47	7.2	47	89	0	507	34	8	29	27	1.86
91501043--91501486	219	2.0	219	99	0	879	34	9	28	27	1.88
91501262--91501600	94	3.6	94	91	0	561	34	8	29	27	1.86
91501331--91501408	25	3.2	25	64	10	72	35	5	26	32	1.79
91513627--91513729	29	3.6	28	81	5	116	21	16	33	29	1.95
91515211--91515428	55	4.1	54	78	9	218	34	16	25	23	1.95
91515231--91515428	53	3.8	53	79	5	181	35	17	25	22	1.95
91524040--91524096	3	19.0	3	100	0	114	33	0	0	66	0.92
91524202--91524251	16	3.1	17	65	11	50	42	2	4	52	1.31
91525763--91525909	39	3.8	39	74	3	134	39	10	12	37	1.78
91531871--91531957	3	29.3	3	84	11	117	34	0	2	63	1.07
91536726--91536782	18	2.8	20	69	15	55	42	8	12	36	1.74
91536717--91536829	39	2.9	39	84	2	158	40	9	14	35	1.78
91543241--91543350	40	2.8	40	84	0	139	23	25	23	27	2.00
91544927--91545028	29	3.5	29	90	0	150	23	33	15	27	1.95
91553513--91553720	40	5.2	40	86	0	236	25	22	26	25	2.00
91553515--91553720	80	2.6	80	85	1	261	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91558997--91559220	40	5.6	40	87	3	281	25	22	25	26	2.00
91558996--91559220	81	2.8	80	87	2	292	24	22	26	26	2.00
91559296--91559331	18	2.0	18	100	0	72	22	16	16	44	1.86
91562962--91562996	13	2.7	13	100	0	70	31	37	31	0	1.58
91564847--91565015	40	4.2	40	80	4	173	23	26	21	28	1.99
91572766--91572896	40	3.3	40	85	0	172	24	27	21	26	1.99
91572783--91572933	40	3.8	40	85	4	180	23	25	22	28	1.99
91574926--91575077	40	3.8	40	76	8	139	25	22	27	25	2.00
91583668--91583852	79	2.3	82	83	7	229	24	24	27	23	2.00
91583669--91583860	40	4.8	40	79	7	151	24	24	28	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425