genome.fa.s8.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  162  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49325255--49325365	47	2.4	47	89	3	161	27	27	9	36	1.87
49325369--49325550	46	4.0	46	97	0	337	31	27	7	34	1.84
49335457--49335557	28	3.5	30	82	6	118	29	14	26	28	1.95
49335486--49335561	29	2.7	28	76	13	75	30	14	26	28	1.95
49340682--49340735	27	2.0	27	85	0	72	40	5	14	38	1.70
49340981--49341228	49	5.0	50	80	4	268	26	18	27	27	1.98
49340984--49341228	100	2.5	98	81	3	294	26	19	26	28	1.99
49344121--49344159	20	2.0	20	100	0	78	35	12	20	30	1.90
49344209--49344304	24	4.0	24	91	0	147	30	21	19	28	1.98
49348419--49348482	31	2.1	31	96	0	119	23	21	15	39	1.92
49348655--49348743	24	3.8	22	78	14	97	26	23	22	26	2.00
49348638--49348757	49	2.4	51	75	19	128	26	24	20	29	1.99
49349842--49349921	30	2.7	30	78	0	97	21	23	11	43	1.84
49349817--49350033	90	2.4	90	80	3	242	23	25	14	36	1.93
49349906--49350033	60	2.2	59	80	4	141	25	25	14	35	1.93
49349906--49350062	30	5.3	29	71	7	109	24	25	14	36	1.93
49357868--49357910	22	2.0	21	81	4	50	27	11	34	25	1.91
49359111--49359206	47	2.0	47	95	0	174	34	9	22	33	1.87
49373465--49373781	172	1.8	172	97	0	607	38	24	3	33	1.73
49373758--49373812	24	2.4	24	84	6	69	45	21	1	30	1.62
49374733--49374902	43	4.0	42	71	10	112	27	27	14	30	1.95
49379398--49379457	27	2.3	26	88	2	84	21	16	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49383273--49383444	93	1.8	93	96	0	317	27	29	21	20	1.98
49383266--49383441	46	3.8	46	79	12	216	28	29	21	20	1.98
49390456--49390625	93	1.8	93	92	2	288	28	28	20	22	1.99
49390447--49390622	46	3.8	47	79	12	193	30	28	19	21	1.98
49390498--49390641	46	3.1	44	75	15	132	29	27	20	22	1.98
49396898--49397114	37	5.9	37	95	1	375	25	31	19	23	1.98
49397255--49397977	48	15.0	48	89	6	1099	31	26	6	35	1.81
49397255--49397977	98	7.5	96	89	6	1099	31	26	6	35	1.81
49397264--49397977	146	5.0	144	90	5	1090	31	25	6	35	1.81
49397750--49397929	85	2.1	87	95	2	328	32	26	6	35	1.82
49397798--49397879	37	2.2	37	95	0	146	32	26	7	32	1.84
49397832--49397977	50	3.0	50	94	2	260	32	26	6	35	1.81
49397699--49397977	135	2.1	133	95	1	495	31	26	6	35	1.83
49400370--49400417	9	5.0	9	76	14	51	16	12	0	70	1.16
49401257--49401311	25	2.2	25	87	6	76	25	30	14	29	1.95
49401471--49401711	40	6.0	40	90	0	365	25	30	22	20	1.98
49403326--49403505	40	4.6	40	90	4	269	21	27	23	26	1.99
49403326--49403505	79	2.3	79	87	7	267	21	27	23	26	1.99
49412616--49412694	29	2.7	29	86	5	106	27	32	15	24	1.95
49427246--49427457	40	5.3	40	82	2	212	24	26	22	26	2.00
49427246--49427457	80	2.7	80	82	2	248	24	26	22	26	2.00
49435273--49435410	38	3.5	39	85	5	147	22	28	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49435274--49435460	39	4.8	40	80	9	178	22	27	23	25	2.00
49442245--49442428	40	4.6	39	75	6	138	26	23	27	22	2.00
49442285--49442473	80	2.4	81	77	4	186	23	24	29	22	1.99
49450782--49450907	50	2.5	49	86	6	173	22	32	17	27	1.96
49450888--49451046	46	3.5	45	77	9	126	24	28	17	28	1.97
49453738--49453767	2	15.0	2	92	0	51	46	0	0	53	1.00
49455744--49455790	21	2.4	19	82	10	58	46	23	2	27	1.63
49458153--49458262	42	2.6	42	86	0	148	34	20	11	32	1.89
49458533--49458560	13	2.2	13	100	0	56	32	0	0	67	0.91
49459000--49459025	10	2.6	10	100	0	52	88	0	0	11	0.52
49460197--49460234	20	1.9	20	88	0	58	34	2	10	52	1.50
49461863--49461931	28	2.5	28	95	2	122	43	27	10	18	1.82
49468207--49468244	20	1.9	20	88	0	58	34	2	10	52	1.50
49469871--49469939	28	2.5	28	95	2	122	43	27	10	18	1.82
49475635--49475659	12	2.1	12	100	0	50	44	0	8	48	1.32
49475977--49476146	43	4.0	43	76	6	173	23	18	27	31	1.97
49479319--49480163	48	17.9	48	92	3	1385	34	6	27	31	1.82
49479846--49479923	37	2.1	37	100	0	156	35	7	25	30	1.84
49480313--49480415	37	2.8	37	83	0	134	23	18	30	28	1.98
49481746--49481772	13	2.1	13	100	0	54	25	0	29	44	1.54
49482078--49482115	18	2.1	18	100	0	76	47	21	5	26	1.71
49482122--49482271	57	2.6	56	81	10	171	25	31	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49482123--49482271	28	5.2	28	84	7	167	25	31	12	30	1.93
49490577--49490608	14	2.1	16	88	11	50	62	12	0	25	1.30
49492244--49492292	15	3.1	15	88	5	62	12	26	0	61	1.31
49492398--49492446	18	2.7	18	75	15	55	8	26	0	65	1.20
49495176--49495276	28	3.5	30	82	6	118	29	14	26	28	1.95
49495205--49495280	29	2.7	28	76	13	75	30	14	26	28	1.95
49497171--49497297	40	3.2	40	77	4	132	24	24	28	22	2.00
49505108--49505256	40	3.8	38	77	13	133	26	23	26	22	2.00
49505145--49505270	38	3.3	38	80	4	146	23	23	27	24	2.00
49510548--49510585	20	1.9	20	88	0	58	34	2	10	52	1.50
49512210--49512278	28	2.5	28	95	2	122	43	27	10	18	1.82
49513852--49513934	26	3.1	27	91	6	141	48	24	9	18	1.77
49513853--49513935	28	3.0	28	92	5	143	46	25	9	18	1.79
49516325--49516368	19	2.4	19	85	7	56	50	0	9	40	1.34
49518156--49518237	26	3.0	27	92	5	139	48	23	9	18	1.77
49518865--49518889	9	2.8	9	100	0	50	12	0	0	88	0.53
49519972--49520200	42	5.3	42	77	6	215	29	27	15	27	1.96
49520084--49520177	48	2.0	48	91	4	154	29	25	13	30	1.94
49520188--49520303	37	3.2	36	80	8	135	25	26	18	29	1.98
49522966--49523043	28	2.8	28	78	0	84	28	28	15	28	1.96
49523054--49523129	40	1.9	40	86	5	109	32	28	15	22	1.95
49527066--49527095	13	2.2	14	94	5	53	80	0	6	13	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49531403--49531434	14	2.4	13	90	10	55	62	12	6	18	1.50
49548883--49548956	19	4.1	19	82	10	109	37	17	10	33	1.85
49549031--49549117	39	2.2	39	93	0	147	28	27	24	19	1.98
49555703--49555880	52	3.5	50	87	4	232	27	14	30	28	1.95
49555703--49555850	52	2.9	51	92	4	237	28	12	29	29	1.93
49558457--49558500	19	2.4	19	85	7	56	50	0	9	40	1.34
49560315--49560383	28	2.5	28	90	2	104	44	24	10	20	1.82
49563686--49563746	30	2.0	30	87	0	86	29	24	8	37	1.84
49565289--49565405	24	4.9	24	82	0	135	33	23	15	27	1.95
49582039--49582286	52	4.6	52	71	16	209	38	14	22	24	1.92
49582070--49582286	80	2.6	80	84	7	267	39	14	21	24	1.91
49582203--49582322	34	3.7	33	83	13	160	35	15	23	25	1.94
49582039--49582293	28	9.3	28	75	16	239	37	14	22	24	1.92
49584451--49584602	34	4.5	34	80	4	150	32	8	16	42	1.78
49584457--49584602	67	2.2	68	82	3	179	32	8	16	43	1.77
49584696--49584730	11	3.1	11	91	4	52	17	0	25	57	1.40
49587868--49587991	61	2.0	61	98	0	239	29	12	17	41	1.86
49590068--49590414	27	12.9	27	80	8	205	30	10	18	40	1.84
49590132--49590344	80	2.6	80	80	7	216	28	8	20	42	1.82
49590073--49590414	107	3.2	106	78	8	300	30	9	19	40	1.83
49590212--49590406	80	2.4	80	78	6	216	30	8	21	40	1.83
49590403--49590478	27	2.8	27	89	0	116	30	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49590242--49590441	107	1.9	107	79	6	226	31	11	18	38	1.86
49591711--49591851	34	4.2	32	74	10	113	34	9	15	41	1.79
49591699--49591851	67	2.2	68	78	8	170	33	9	15	41	1.79
49593965--49594035	27	2.6	27	79	2	70	74	4	16	4	1.13
49594399--49594549	34	4.5	34	84	3	155	29	8	19	41	1.81
49594405--49594549	66	2.2	68	83	5	179	29	8	20	42	1.81
49594648--49594677	11	2.6	11	94	5	51	20	0	20	60	1.37
49598537--49598720	40	4.7	39	85	8	239	26	27	22	24	2.00
49598537--49598720	78	2.3	81	86	6	252	26	27	22	24	2.00
49606709--49606892	40	4.7	39	85	8	239	26	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425