Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  167  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50617658--50617794
40
3.5
40
90
4
199
24
28
23
23
2.00
50626700--50626909
40
5.2
40
87
2
305
25
24
28
21
1.99
50634818--50635027
40
5.2
40
87
2
305
25
24
28
21
1.99
50641840--50642166
48
6.9
49
74
9
203
24
28
19
26
1.99
50641991--50642205
48
4.6
48
76
6
172
23
27
19
29
1.98
50641991--50642205
94
2.3
94
81
4
238
23
27
19
29
1.98
50646170--50646304
29
4.7
29
92
0
216
31
15
22
29
1.95
50654185--50654319
29
4.7
29
92
0
216
31
15
22
29
1.95
50659809--50659863
25
2.2
25
87
3
76
23
23
18
34
1.96
50660569--50660627
29
2.0
29
100
0
118
33
3
27
35
1.74
50664356--50664407
17
2.9
17
78
15
59
46
3
1
48
1.31
50664351--50664469
37
3.2
35
73
17
107
50
3
4
42
1.38
50669550--50669700
43
3.5
43
76
6
153
33
22
15
29
1.94
50674083--50674144
30
2.1
30
90
0
97
16
16
29
38
1.90
50676701--50676746
23
2.0
23
95
0
83
34
32
8
23
1.86
50678382--50678420
17
2.3
17
86
8
53
23
2
5
69
1.21
50679446--50679498
15
3.6
14
75
12
52
30
0
5
64
1.17
50679441--50679498
30
1.9
31
86
10
84
29
0
5
65
1.14
50680051--50680081
2
15.5
2
93
0
53
51
45
3
0
1.17
50688129--50688163
4
8.8
4
93
0
61
25
2
22
48
1.64
50690675--50690732
30
1.9
30
92
0
98
32
12
25
29
1.92
50691073--50691525
46
9.7
46
75
10
268
28
19
28
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50691076--50691528
94
4.9
94
78
11
423
28
19
28
22
1.98
50692828--50692863
18
1.9
19
94
5
65
33
16
11
38
1.84
50692831--50692871
18
2.3
18
84
12
50
36
12
14
36
1.84
50693216--50693394
45
4.0
45
87
1
261
25
28
13
32
1.94
50693227--50693394
89
1.9
89
91
0
273
26
29
13
30
1.94
50693364--50693627
78
3.4
78
90
2
397
24
24
18
32
1.97
50695613--50695860
40
6.2
40
86
1
329
22
20
29
27
1.99
50705926--50706001
22
3.7
21
76
15
68
40
17
6
35
1.75
50705962--50706052
19
4.9
19
92
8
161
36
15
10
37
1.83
50705955--50706052
35
2.7
38
87
12
161
35
16
10
37
1.82
50706169--50706208
21
2.0
20
85
5
53
10
2
15
72
1.21
50715411--50715774
47
7.8
47
74
11
254
27
21
29
21
1.99
50715409--50715774
94
3.9
94
79
8
388
27
21
29
22
1.99
50715410--50715774
141
2.6
139
80
9
411
27
21
29
22
1.99
50719624--50719708
22
3.9
22
78
6
100
21
25
14
38
1.91
50719632--50719730
44
2.2
44
98
0
189
19
25
16
39
1.91
50719657--50719731
22
3.4
21
76
10
80
18
24
17
40
1.91
50725882--50726057
46
3.8
46
81
10
232
20
21
29
28
1.98
50725878--50726049
93
1.8
93
96
0
317
20
22
30
27
1.98
50729004--50729072
15
4.6
15
83
0
84
11
17
13
57
1.64
50728995--50729082
30
3.0
30
81
8
99
10
17
15
56
1.66
50731467--50731642
46
3.8
46
81
10
232
20
21
29
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50731463--50731634
93
1.8
93
96
0
317
20
22
30
27
1.98
50734588--50734656
15
4.6
15
83
0
84
11
17
13
57
1.64
50734579--50734666
30
3.0
30
81
8
99
10
17
15
56
1.66
50737049--50737224
46
3.8
46
81
10
232
20
21
29
28
1.98
50737045--50737216
93
1.8
93
96
0
317
20
22
30
27
1.98
50741923--50742011
40
2.3
39
80
9
110
24
29
22
23
1.99
50745359--50745584
48
4.7
48
73
14
180
28
19
24
27
1.98
50750426--50750512
24
3.6
24
92
0
147
22
18
22
35
1.95
50750426--50750532
48
2.2
48
88
3
153
26
17
21
34
1.96
50762178--50762353
46
3.8
46
75
16
175
22
18
27
31
1.97
50763814--50763872
21
2.8
20
75
12
57
52
8
5
33
1.54
50778096--50778120
13
1.9
13
100
0
50
48
8
0
44
1.32
50781319--50781480
67
2.5
66
79
6
177
29
16
30
24
1.96
50782346--50782385
2
20.0
2
100
0
80
50
0
0
50
1.00
50785513--50785684
67
2.6
66
81
7
170
31
16
29
22
1.96
50785537--50785720
67
2.8
64
78
8
203
28
16
30
23
1.96
50787717--50787786
34
2.1
34
94
0
122
45
17
10
27
1.80
50788847--50788933
6
14.7
6
82
12
101
80
1
0
18
0.78
50788847--50788932
11
7.4
11
84
12
102
80
1
0
18
0.78
50788847--50788925
17
4.9
16
86
10
108
79
1
0
18
0.80
50796156--50796275
43
2.9
41
75
13
100
24
20
27
28
1.99
50797385--50797555
81
2.1
80
86
1
243
35
18
20
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50797384--50797555
27
6.4
27
83
2
213
35
18
20
25
1.95
50798267--50798328
31
2.0
32
84
9
83
20
25
19
33
1.96
50800293--50800669
47
8.0
47
91
1
594
28
30
7
33
1.86
50800308--50800669
143
2.5
142
95
0
627
28
29
8
33
1.86
50809412--50809611
27
7.4
27
83
0
238
36
17
20
26
1.94
50809412--50809611
54
3.7
54
85
0
274
36
17
20
26
1.94
50818015--50818164
43
3.5
44
77
13
152
24
22
27
25
2.00
50822689--50822814
28
4.5
28
86
0
153
37
20
24
17
1.94
50822818--50822882
28
2.3
28
84
10
80
32
15
33
18
1.92
50827694--50827766
38
1.9
38
97
2
139
27
6
6
58
1.49
50839973--50840036
31
2.1
31
87
0
92
23
21
14
40
1.90
50840245--50840302
24
2.4
24
85
8
73
29
22
18
29
1.98
50842737--50842805
30
2.3
30
100
0
138
20
40
10
28
1.85
50847977--50848040
31
2.1
31
85
5
85
23
20
14
42
1.88
50850747--50850900
72
2.1
72
84
4
195
20
19
30
29
1.97
50853304--50853354
20
2.5
20
84
6
68
33
23
31
11
1.91
50853627--50853659
2
16.5
2
100
0
66
51
0
0
48
1.00
50856099--50856153
29
1.9
29
96
3
103
36
29
20
14
1.92
50859104--50859239
29
4.8
29
89
5
172
28
30
15
25
1.96
50859104--50859247
58
2.5
57
84
6
191
28
29
15
27
1.96
50863726--50863789
31
2.1
31
87
0
92
25
21
15
37
1.93
50863982--50864145
23
7.0
24
91
6
257
28
22
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50863982--50864145
47
3.5
47
92
5
262
28
22
21
27
1.99
50864003--50864144
70
2.0
69
94
4
250
29
21
21
27
1.98
50864204--50864260
9
5.9
9
73
15
51
35
21
8
35
1.84
50864192--50864262
20
3.5
20
94
0
124
32
21
11
35
1.89
50864197--50864251
11
5.4
11
70
16
55
30
20
12
36
1.90
50864299--50864346
25
2.0
24
83
4
60
25
18
25
31
1.98
50865505--50865568
27
2.4
27
84
5
85
20
25
18
35
1.95
50865627--50865877
27
9.3
27
79
6
123
36
8
19
35
1.83
50865775--50866086
27
11.6
27
88
0
372
41
8
22
27
1.82
50866090--50866188
27
3.7
27
79
5
103
31
10
19
39
1.85
50866082--50866186
54
2.0
53
83
9
133
31
10
20
37
1.87
50866098--50866203
27
3.9
27
74
9
74
34
9
17
37
1.83
50867681--50867806
29
4.4
29
83
10
136
26
29
16
26
1.97
50867681--50867823
58
2.5
56
79
9
146
27
29
16
27
1.97
50868031--50868089
16
3.7
16
72
0
55
10
18
18
52
1.73
50869363--50869394
16
2.0
16
93
0
55
9
6
34
50
1.60
50871939--50872038
27
3.5
28
84
5
121
34
28
13
25
1.93
50872881--50872905
7
3.6
7
100
0
50
60
28
0
12
1.32
50878976--50879148
93
1.9
93
90
2
276
27
28
20
22
1.99
50878969--50879144
46
3.8
46
76
5
194
28
28
20
22
1.98
50879020--50879163
46
3.1
45
71
11
121
29
29
19
21
1.98
50883863--50883938
33
2.3
33
81
0
98
48
10
22
18
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50885239--50885302
30
2.1
30
94
0
110
48
17
12
21
1.80
50888655--50888805
40
3.8
39
77
10
119
23
26
23
27
2.00
50888655--50888804
80
1.9
80
82
8
189
22
26
23
27
2.00
50902841--50903024
78
2.3
82
83
8
229
23
27
24
24
2.00
50902834--50903024
40
4.8
39
75
10
154
23
28
24
24
2.00
50905127--50905163
16
2.2
17
90
4
58
8
29
16
45
1.76
50909367--50909550
40
4.6
39
75
6
138
26
23
27
22
2.00
50909407--50909595
80
2.4
81
77
4
186
23
24
29
22
1.99
50917484--50917667
40
4.6
39
75
6
138
26
23
27
22
2.00
50917524--50917712
80
2.4
81
77
4
186
23
24
29
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425