genome.fa.s8.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  134  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40350813--40350988	54	3.3	54	75	7	169	39	22	9	29	1.85
40350927--40351094	82	2.1	81	82	1	201	34	20	8	36	1.83
40350965--40351348	27	14.2	27	88	1	518	29	22	8	39	1.83
40351584--40351635	27	1.9	27	88	0	77	23	26	17	32	1.96
40351755--40351836	6	13.3	6	71	19	62	20	17	13	48	1.80
40351755--40351827	31	2.4	31	90	0	110	20	17	12	49	1.79
40353822--40353878	28	2.0	29	82	3	71	42	3	22	31	1.71
40353823--40353887	28	2.3	28	81	2	67	43	3	23	30	1.69
40355156--40355195	20	2.0	20	85	0	53	37	20	2	40	1.66
40355423--40355625	55	3.7	54	81	6	232	22	25	17	34	1.96
40359793--40359926	70	1.9	70	96	0	250	38	21	3	35	1.72
40362228--40362386	43	3.8	40	81	9	158	30	27	18	24	1.98
40363496--40363524	14	2.0	15	93	6	51	51	20	0	27	1.47
40365541--40365692	67	2.3	66	81	6	168	29	16	31	22	1.96
40367759--40367880	43	2.9	42	81	7	156	27	22	15	33	1.95
40378820--40378882	24	2.6	24	97	0	117	20	15	26	36	1.93
40380801--40380885	43	2.0	43	92	0	143	27	22	27	23	1.99
40380809--40380918	43	2.6	43	86	1	141	29	20	28	22	1.98
40384626--40384789	71	2.3	71	97	0	310	34	18	28	18	1.95
40402266--40402335	27	2.6	27	88	2	104	31	25	14	28	1.95
40402344--40402450	42	2.5	42	93	0	178	23	30	14	31	1.94
40410494--40410682	29	6.6	29	93	1	308	26	14	32	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40410492--40410662	57	3.0	57	96	0	306	27	14	30	27	1.95
40410494--40410682	86	2.2	87	93	0	317	26	14	32	26	1.95
40412741--40412810	27	2.6	27	88	2	104	31	25	14	28	1.95
40412819--40412967	42	3.5	42	97	0	271	22	32	14	31	1.93
40419355--40419406	26	2.0	26	92	0	86	34	11	15	38	1.83
40425626--40425765	49	2.8	49	87	1	190	27	18	26	27	1.98
40425620--40425765	50	2.9	50	86	1	195	26	17	27	28	1.98
40428249--40428317	27	2.5	28	92	2	113	30	14	24	30	1.95
40428249--40428330	27	3.0	27	87	5	85	31	15	21	30	1.95
40435582--40435647	2	33.0	2	100	0	132	50	0	0	50	1.00
40436150--40436219	27	2.5	28	93	2	115	30	14	25	30	1.95
40454225--40454392	40	4.2	40	85	3	205	26	28	21	23	1.99
40454225--40454392	80	2.1	80	87	2	239	26	28	21	23	1.99
40454349--40454574	124	1.8	125	83	0	301	32	24	11	31	1.90
40456215--40456323	48	2.3	48	88	1	157	31	23	14	30	1.95
40458563--40458604	15	2.8	15	88	0	66	52	14	16	16	1.75
40459526--40459635	54	2.1	54	98	1	213	29	20	7	43	1.78
40462969--40463141	93	1.9	93	95	0	310	27	31	21	19	1.97
40462962--40463137	46	3.8	46	80	10	214	28	31	21	18	1.97
40462970--40463156	46	4.0	45	72	12	137	28	31	20	19	1.97
40464665--40465046	38	9.2	38	71	17	262	30	24	15	29	1.96
40464673--40465044	85	4.4	85	92	1	626	30	24	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40467630--40467670	6	6.5	6	89	10	64	80	0	2	17	0.82
40467633--40467671	20	2.0	20	94	0	69	79	0	2	17	0.84
40473159--40473273	29	4.0	28	84	6	133	28	15	26	28	1.96
40473172--40473280	58	1.9	57	88	1	164	28	16	27	27	1.97
40473172--40473273	29	3.6	28	86	6	134	27	16	27	28	1.97
40479406--40479437	16	2.0	16	93	0	55	53	31	3	12	1.54
40480774--40480887	28	4.0	28	88	4	158	27	15	29	27	1.96
40481904--40481951	21	2.2	22	81	3	53	20	4	20	54	1.61
40489023--40489082	30	2.0	30	90	0	93	28	25	8	38	1.84
40494276--40494316	21	2.0	21	85	0	55	21	17	41	19	1.90
40496522--40496581	30	2.0	30	90	0	93	28	25	8	38	1.84
40503090--40503253	29	5.7	29	89	0	247	32	14	22	30	1.94
40505935--40505995	20	3.0	20	87	0	86	19	27	32	19	1.96
40508823--40509122	48	6.2	48	88	1	438	38	5	24	32	1.79
40508821--40509124	98	3.1	98	90	2	470	38	5	24	32	1.78
40509255--40509401	37	4.0	37	90	0	222	24	18	29	27	1.98
40518775--40518904	40	3.2	40	82	4	165	23	24	28	23	2.00
40526821--40526950	40	3.2	40	82	4	165	23	24	28	23	2.00
40536221--40536368	40	3.7	40	86	5	174	22	27	22	26	2.00
40544253--40544416	40	4.1	40	82	4	179	25	28	21	25	1.99
40544239--40544416	80	2.2	80	82	3	207	24	27	21	25	2.00
40552346--40552547	40	5.1	40	84	5	205	24	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40555352--40555471	59	2.0	59	95	0	213	30	32	17	20	1.95
40559302--40559736	47	9.3	47	95	0	719	28	30	8	33	1.86
40559658--40559733	22	3.3	22	67	16	64	27	30	9	32	1.88
40563110--40563457	40	8.7	40	92	0	545	25	27	22	24	2.00
40563513--40563585	38	1.9	38	86	5	103	24	24	19	31	1.98
40566741--40566890	37	4.1	37	92	0	246	25	32	19	23	1.98
40566935--40567453	48	11.0	48	91	3	829	31	26	6	35	1.81
40570058--40570160	29	3.6	28	88	5	143	28	16	27	28	1.97
40578095--40578197	29	3.6	28	88	5	143	28	16	27	28	1.97
40582034--40582071	2	19.0	2	100	0	76	50	0	0	50	1.00
40586814--40587077	56	4.7	56	89	1	395	26	15	23	33	1.95
40586814--40587077	112	2.4	112	92	0	438	26	15	23	33	1.95
40587995--40588027	16	2.1	16	94	0	57	30	12	21	36	1.90
40593033--40593300	56	4.8	56	86	1	378	26	13	24	35	1.92
40593038--40593300	111	2.4	112	91	1	413	26	13	24	35	1.93
40602189--40602234	23	2.0	23	95	0	83	15	52	6	26	1.67
40604138--40604182	23	2.0	23	86	0	63	64	0	4	31	1.13
40604714--40604741	5	5.6	5	100	0	56	82	0	0	17	0.68
40609316--40609457	71	2.0	71	100	0	284	35	12	12	39	1.82
40610282--40610676	46	9.0	46	86	9	493	21	25	15	37	1.93
40610282--40610666	137	3.0	130	86	7	484	21	25	15	37	1.93
40610507--40610666	38	4.0	38	86	12	239	23	25	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40610460--40610676	84	2.6	84	96	0	407	23	25	16	34	1.96
40622807--40623050	40	6.1	40	85	4	307	26	28	22	22	1.99
40628483--40628924	50	8.7	50	78	3	436	26	18	25	29	1.98
40628479--40628922	101	4.4	100	84	1	332	26	18	25	29	1.98
40628479--40628922	151	2.9	151	86	2	541	26	18	25	29	1.98
40628629--40628931	101	3.0	102	89	1	448	26	19	24	29	1.98
40628845--40628919	25	3.0	26	69	13	75	29	16	22	32	1.95
40635297--40635621	48	6.8	48	84	0	384	28	30	16	25	1.96
40640096--40640239	39	3.7	39	90	0	234	25	20	29	23	1.99
40640097--40640279	78	2.3	79	90	3	280	24	22	29	24	1.99
40642296--40642341	23	2.0	23	84	12	60	45	10	6	36	1.65
40642940--40643072	54	2.4	54	81	11	144	32	24	16	27	1.96
40644574--40644604	10	3.1	10	100	0	62	58	0	29	12	1.35
40647005--40647268	46	5.7	46	74	14	238	23	19	28	29	1.98
40646999--40647261	93	2.8	93	93	0	438	23	20	27	28	1.99
40654004--40654145	29	5.0	29	87	1	189	28	28	14	28	1.95
40654215--40654260	19	2.5	19	86	6	60	17	34	21	26	1.95
40654217--40654262	18	2.6	17	83	10	56	19	34	21	23	1.96
40655633--40655664	16	2.0	16	100	0	64	6	6	37	50	1.53
40658150--40658176	14	1.9	14	100	0	54	48	0	14	37	1.45
40663466--40663629	71	2.3	71	97	0	310	35	17	27	19	1.94
40671412--40671548	40	3.5	40	90	3	206	24	22	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40679231--40679372	40	3.6	40	90	2	189	26	21	28	23	1.99
40686045--40686128	28	3.0	28	94	0	150	45	25	11	17	1.83
40694181--40694239	28	2.1	28	100	0	118	45	25	11	16	1.82
40703039--40703372	40	8.5	40	86	5	434	23	22	27	26	2.00
40703039--40703339	79	3.8	80	90	4	459	23	22	26	26	2.00
40703039--40703339	157	1.9	160	88	4	466	23	22	26	26	2.00
40705987--40706343	47	7.6	46	71	15	202	22	29	20	28	1.98
40705987--40706343	94	3.8	93	78	9	363	22	29	20	28	1.98
40709092--40709192	49	2.0	50	92	1	168	56	9	2	30	1.47
40713606--40713791	40	4.7	40	83	5	225	25	29	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425