genome.fa.s8.2.7.7.80.10.50.1000.338.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  338  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104893076--104893243	92	1.8	92	87	5	250	21	23	13	41	1.89
104893621--104893747	23	5.4	23	69	11	78	36	22	24	16	1.94
104895589--104895629	21	2.0	20	90	4	64	0	26	0	73	0.84
104897498--104897595	48	2.0	48	84	0	124	29	17	13	39	1.87
104897881--104897928	23	2.1	23	88	0	69	18	14	18	47	1.82
104898269--104898314	16	2.8	16	83	3	56	13	39	15	32	1.85
104901507--104901565	27	2.2	27	85	11	77	45	0	5	49	1.24
104907175--104907234	26	2.4	24	83	8	75	68	3	0	28	1.05
104907224--104907262	20	1.9	20	89	5	60	71	7	0	20	1.10
104907216--104907262	20	2.4	19	85	7	58	72	8	0	19	1.10
104908775--104908813	19	2.0	21	90	10	64	61	2	0	35	1.10
104910855--104910887	17	1.9	17	93	0	57	39	21	18	21	1.93
104917497--104917544	9	5.2	9	80	10	53	58	2	0	39	1.10
104917928--104917961	11	3.2	11	87	8	52	47	0	0	52	1.00
104917928--104917969	21	2.0	21	85	0	57	50	0	0	50	1.00
104926116--104926146	6	5.0	6	96	4	53	48	0	35	16	1.46
104928051--104928120	16	4.1	16	73	20	61	67	1	30	1	1.08
104928052--104928128	3	25.3	3	81	7	93	64	1	32	1	1.09
104929219--104929266	21	2.3	21	88	0	69	8	22	31	37	1.84
104929926--104930102	83	2.1	84	89	4	268	43	20	8	27	1.81
104929926--104930102	43	4.2	43	90	2	263	43	20	8	27	1.81
104929930--104930102	85	2.1	83	89	4	258	43	20	8	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104931743--104931784	15	2.8	15	82	7	50	35	40	9	14	1.78
104932078--104932180	46	2.2	46	94	0	188	48	10	9	31	1.70
104932124--104932564	62	7.0	62	91	3	561	46	14	13	25	1.80
104932436--104932540	32	3.2	34	64	24	89	44	15	17	22	1.86
104932482--104932518	16	2.3	16	90	0	56	51	21	13	13	1.75
104932703--104932785	6	13.8	6	78	7	53	50	16	9	22	1.74
104933369--104933441	31	2.4	29	82	8	92	21	10	20	46	1.81
104934090--104934152	32	2.0	32	87	3	92	30	1	1	66	1.10
104934095--104934163	32	2.2	30	80	10	77	30	0	1	68	0.99
104935785--104935895	47	2.4	47	84	6	154	35	23	16	25	1.95
104943036--104943146	47	2.4	47	84	6	154	35	23	16	25	1.95
104945826--104945942	59	2.0	59	91	3	191	34	4	6	54	1.46
104948831--104948873	23	1.9	22	95	4	77	48	11	0	39	1.40
104948832--104948882	23	2.3	22	83	12	68	49	11	0	39	1.40
104950398--104950437	2	19.5	2	89	5	62	50	2	0	47	1.14
104950560--104950607	26	1.9	26	87	8	73	29	0	8	62	1.24
104954043--104954112	29	2.4	29	80	2	79	31	15	7	45	1.73
104959628--104959659	7	4.6	7	92	0	55	84	12	3	0	0.74
104960369--104960414	6	7.5	6	90	4	74	13	2	2	82	0.85
104960369--104960425	18	3.1	18	87	7	80	10	3	3	82	0.91
104961752--104961851	43	2.3	43	89	0	146	31	18	22	29	1.97
104961773--104961862	43	2.1	43	89	0	135	27	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104962174--104962229	21	2.7	21	85	0	67	0	39	21	39	1.54
104974397--104974463	34	2.0	34	85	5	91	17	23	25	32	1.97
104985065--104985092	5	5.6	5	100	0	56	82	0	0	17	0.68
104988372--104988425	22	2.3	24	78	9	58	33	1	9	55	1.42
104994732--104994786	9	6.1	9	76	14	51	23	32	0	43	1.54
104994728--104994784	18	3.2	18	78	14	64	26	35	0	38	1.57
104996899--104996945	24	2.0	24	86	0	67	38	0	4	57	1.18
104997331--104997380	3	16.7	3	100	0	100	34	0	0	66	0.92
105001538--105001785	40	6.2	39	81	5	257	25	27	22	24	2.00
105001538--105001785	80	3.1	80	85	2	295	25	27	22	24	2.00
105001538--105001785	120	2.1	120	83	3	304	25	27	22	24	2.00
105005719--105005846	7	18.6	7	74	15	81	81	4	13	0	0.89
105005719--105005877	13	12.4	12	72	13	86	80	4	13	1	0.94
105005726--105005882	40	3.8	39	75	19	135	79	3	14	1	0.96
105005743--105005869	5	23.8	5	74	21	82	78	3	14	2	0.99
105006307--105006430	65	1.9	65	88	0	185	16	22	11	49	1.78
105007006--105007388	143	2.7	143	81	4	488	30	19	21	28	1.97
105009792--105009868	25	3.2	23	75	12	66	25	23	22	28	1.99
105012718--105012858	54	2.6	54	92	5	232	18	23	23	34	1.96
105012718--105012858	27	5.2	27	84	10	182	18	23	23	34	1.96
105012718--105012875	27	5.9	27	83	11	175	19	24	21	34	1.96
105012718--105012875	81	2.0	80	83	13	200	19	24	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105019790--105019936	54	2.7	54	89	2	215	19	23	21	35	1.96
105019803--105019950	27	5.5	26	81	9	156	20	24	18	35	1.95
105022113--105022159	24	2.0	24	91	0	76	34	29	12	23	1.92
105022123--105022185	24	2.6	24	87	0	81	31	33	14	20	1.92
105029984--105030030	24	2.0	24	91	0	76	34	29	12	23	1.92
105029994--105030056	24	2.6	24	87	0	81	30	34	14	20	1.92
105034326--105034354	11	2.7	11	94	5	51	82	0	0	17	0.66
105040283--105040345	7	8.8	8	72	19	50	63	1	0	34	1.04
105040281--105040337	22	2.6	22	84	13	66	63	1	0	35	1.05
105040486--105040552	23	2.8	24	80	6	75	55	0	1	43	1.09
105040581--105040617	11	3.5	11	79	20	51	59	0	2	37	1.12
105040703--105040750	21	2.3	21	78	10	53	37	4	2	56	1.30
105041491--105041651	67	2.4	67	97	0	304	33	4	11	49	1.61
105042441--105042492	27	2.0	27	84	3	70	13	42	19	25	1.87
105042803--105042846	22	2.0	21	83	12	54	27	6	2	63	1.31
105042840--105042888	25	2.0	24	84	4	62	40	2	4	53	1.32
105043309--105043354	18	2.5	17	86	6	56	43	2	2	52	1.25
105043269--105043348	40	2.0	39	83	7	99	38	2	2	56	1.26
105043324--105043372	25	2.0	24	84	11	64	46	2	2	48	1.25
105043558--105043584	11	2.5	11	100	0	54	18	0	0	81	0.69
105043820--105043868	21	2.3	20	83	16	64	36	0	8	55	1.30
105046724--105046781	19	3.0	19	72	20	57	41	12	6	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105046808--105046855	22	2.0	24	84	11	64	41	8	2	47	1.45
105049080--105049161	38	2.2	37	87	10	114	34	28	7	30	1.84
105049629--105049663	18	1.9	18	88	11	54	37	11	8	42	1.72
105049703--105049746	22	1.9	24	86	9	65	40	9	2	47	1.48
105051922--105051991	36	1.9	36	100	0	140	34	17	15	32	1.91
105051931--105051989	18	3.3	18	68	17	59	35	16	13	33	1.88
105052607--105052688	40	2.0	40	95	0	146	25	14	18	41	1.88
105054402--105054465	24	2.5	25	76	21	62	65	3	0	31	1.08
105054871--105054921	27	2.0	25	85	14	68	56	0	3	39	1.18
105057050--105057088	18	2.2	18	86	4	53	48	7	17	25	1.74
105057504--105057553	21	2.4	21	86	0	64	32	28	2	38	1.68
105058696--105058727	7	4.6	7	92	0	55	28	3	12	56	1.51
105059314--105059351	18	2.1	18	100	0	76	26	26	7	39	1.83
105059742--105059798	25	2.3	23	78	18	62	42	0	3	54	1.17
105062819--105063190	125	3.0	126	88	2	545	28	15	17	38	1.90
105063251--105063349	34	2.9	34	86	4	139	46	12	1	40	1.48
105063440--105063486	24	2.0	24	87	8	69	53	34	0	12	1.39
105067330--105067386	29	2.0	29	89	6	89	33	15	15	35	1.90
105076202--105076233	16	2.0	16	100	0	64	31	6	18	43	1.75
105085468--105085518	21	2.4	21	80	6	59	41	0	3	54	1.19
105087449--105087485	14	2.7	14	80	19	51	37	0	2	59	1.12
105094796--105094821	1	26.0	1	100	0	52	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105103368--105103533	88	1.9	89	94	2	298	35	16	21	26	1.94
105110460--105110487	2	14.0	2	100	0	56	50	0	0	50	1.00
105112492--105112542	22	2.5	20	79	14	59	56	11	7	23	1.61
105112493--105112533	22	1.9	22	90	5	66	56	12	7	24	1.61
105112513--105112605	30	3.1	29	75	7	96	54	11	7	25	1.62
105118472--105118509	2	20.0	2	89	10	62	50	0	0	50	1.00
105122580--105122613	18	1.9	18	88	5	52	58	8	2	29	1.43
105124091--105124124	16	2.1	16	88	0	50	35	20	2	41	1.68
105129921--105129949	10	2.7	11	89	10	51	31	24	10	34	1.89
105130746--105130780	17	2.0	18	88	5	54	22	25	2	48	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425