genome.fa.s8.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  182  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55256821--55256917	30	3.2	30	72	8	90	28	15	27	27	1.96
55259025--55259095	30	2.4	29	84	11	90	15	23	0	60	1.35
55259165--55259227	5	12.0	5	78	18	58	3	17	3	76	1.05
55260172--55260207	16	2.2	16	90	5	54	30	8	8	52	1.61
55261709--55261805	30	3.2	30	71	8	90	27	15	28	27	1.96
55263361--55263398	18	2.1	18	90	0	58	21	21	13	44	1.85
55270324--55270436	27	4.2	26	84	8	136	36	23	23	17	1.95
55270324--55270436	55	2.1	54	86	8	158	36	23	23	17	1.95
55270991--55271055	31	2.1	31	100	0	130	24	33	12	29	1.92
55273472--55273510	10	3.8	10	83	6	51	15	0	2	82	0.79
55280420--55280449	11	2.7	11	100	0	60	13	0	6	80	0.91
55280817--55280864	14	3.4	14	85	0	60	43	6	31	18	1.75
55283320--55283432	27	4.2	26	86	8	145	36	23	23	16	1.94
55283320--55283432	55	2.1	54	88	5	165	36	23	23	16	1.94
55291165--55291270	27	3.9	26	85	8	122	35	20	24	18	1.95
55291165--55291270	55	1.9	54	84	5	142	35	20	24	18	1.95
55291171--55291270	28	3.6	28	81	5	114	34	22	25	19	1.96
55295666--55295713	25	1.9	25	100	0	96	39	20	12	27	1.89
55296711--55296763	18	2.9	18	94	0	97	45	15	20	18	1.85
55297070--55297166	30	3.2	30	71	8	81	28	27	15	27	1.96
55298832--55298888	12	5.2	11	85	12	73	71	8	1	17	1.19
55298832--55298888	22	2.5	22	91	2	87	71	8	1	17	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55298832--55298875	10	4.2	10	88	11	70	70	9	2	18	1.24
55299870--55299900	12	2.7	12	95	5	55	74	0	19	6	1.03
55299871--55299922	18	2.9	18	79	0	59	69	1	19	9	1.26
55299875--55299956	30	2.7	30	75	7	94	64	1	21	12	1.33
55302055--55302151	30	3.2	30	76	2	106	27	27	15	28	1.96
55305893--55305936	17	2.5	17	85	7	61	38	9	0	52	1.33
55311285--55311408	45	2.7	46	87	3	189	25	23	11	40	1.87
55311316--55311381	21	3.0	21	65	10	51	22	21	10	45	1.82
55311293--55311363	21	3.1	23	68	10	65	26	23	7	42	1.80
55311293--55311367	24	3.2	24	68	22	70	26	24	6	42	1.79
55314513--55314540	14	2.0	14	100	0	56	42	21	14	21	1.88
55317238--55317276	20	2.0	20	85	10	53	41	2	2	53	1.28
55317293--55317367	35	2.2	34	92	2	123	41	17	12	29	1.85
55317496--55317537	22	1.9	22	85	9	59	59	2	2	35	1.23
55322377--55322410	16	2.1	16	100	0	68	41	17	14	26	1.88
55323521--55323572	23	2.4	20	75	12	50	63	0	32	3	1.12
55324117--55324255	59	2.4	59	93	0	233	37	12	18	31	1.88
55324654--55324707	21	2.6	21	93	0	90	20	5	44	29	1.74
55325398--55325617	43	5.2	43	87	3	297	43	20	9	26	1.82
55325431--55325616	85	2.2	85	92	0	300	43	20	8	27	1.80
55327259--55327287	15	1.9	15	100	0	58	41	37	6	13	1.72
55329152--55329305	40	3.8	40	80	1	157	27	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55337320--55337473	40	3.8	40	80	1	157	26	21	26	25	1.99
55339047--55339215	48	3.5	48	90	0	250	43	17	13	26	1.85
55339252--55339375	6	20.7	6	78	0	113	57	14	6	21	1.60
55340233--55340293	3	20.0	3	96	3	113	34	0	0	65	0.93
55354917--55354953	18	2.1	18	100	0	74	16	35	21	27	1.94
55356131--55356253	55	2.2	54	78	4	138	24	27	22	25	2.00
55362186--55362236	20	2.7	19	82	14	54	41	0	21	37	1.54
55362681--55363036	45	8.0	45	75	5	274	24	14	27	33	1.94
55362681--55363030	134	2.6	134	89	2	551	24	14	27	34	1.94
55369389--55369449	30	2.0	30	90	0	95	34	16	14	34	1.89
55393654--55393732	31	2.5	31	83	0	104	48	12	18	20	1.81
55393851--55393910	27	2.3	26	82	2	66	35	18	23	23	1.96
55393907--55393936	2	15.0	2	100	0	60	50	0	0	50	1.00
55393969--55394020	27	2.0	26	84	3	68	34	21	26	17	1.95
55394257--55394666	27	15.2	27	85	3	493	41	7	21	29	1.81
55394673--55394895	27	8.2	28	85	2	138	31	8	19	40	1.82
55394644--55394933	81	3.6	79	81	6	278	32	9	20	38	1.84
55394662--55394948	54	5.3	54	83	4	301	30	8	21	39	1.83
55394716--55394948	27	8.6	27	86	0	304	31	8	20	39	1.82
55396901--55396994	6	15.3	6	72	16	77	48	14	18	18	1.81
55396922--55396994	31	2.4	31	92	0	119	47	15	19	17	1.82
55397112--55397171	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55397168--55397203	2	18.0	2	100	0	72	50	0	0	50	1.00
55397526--55397962	27	16.2	27	87	0	543	40	8	21	29	1.83
55397959--55398217	27	9.6	27	84	1	261	30	8	20	40	1.82
55398022--55398226	54	3.8	54	88	0	302	32	7	20	40	1.80
55398037--55398217	27	6.7	27	89	0	263	31	6	20	41	1.78
55400169--55400256	6	14.3	6	68	17	56	50	14	18	17	1.79
55400190--55400256	25	2.7	25	88	0	98	49	14	19	16	1.80
55400374--55400433	27	2.3	26	85	2	75	35	20	23	21	1.96
55400430--55400457	2	14.0	2	100	0	56	50	0	0	50	1.00
55400780--55401216	27	16.2	27	87	0	552	40	8	21	29	1.83
55401213--55401471	27	9.6	27	84	1	261	30	8	20	40	1.82
55401276--55401480	54	3.8	54	88	0	302	32	7	20	40	1.79
55401291--55401471	27	6.7	27	89	0	263	30	6	20	41	1.78
55402414--55402440	12	2.2	12	100	0	54	70	22	0	7	1.12
55403599--55403638	16	2.5	16	87	0	53	37	7	22	32	1.82
55403780--55403829	26	2.0	26	88	4	75	42	0	6	52	1.26
55403805--55403947	58	2.4	59	80	9	166	51	3	1	44	1.27
55403794--55403947	61	2.6	58	80	9	170	50	3	1	44	1.29
55403855--55403970	28	4.2	26	76	15	90	49	3	2	44	1.33
55406706--55406762	28	2.0	28	100	0	114	14	7	42	36	1.72
55406708--55406755	16	3.2	16	66	22	50	16	6	45	31	1.72
55408967--55409174	40	5.2	40	82	2	202	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55408969--55409174	80	2.6	80	83	3	236	25	23	26	24	2.00
55414713--55414930	40	5.5	40	88	2	289	25	28	22	22	1.99
55423823--55423866	17	2.6	17	79	13	63	43	0	22	34	1.54
55423813--55423868	23	2.5	22	80	13	60	41	0	21	37	1.53
55424017--55424100	23	3.7	23	82	10	93	11	4	35	47	1.61
55426338--55426512	49	3.5	48	84	6	242	26	18	25	29	1.98
55426331--55426525	49	3.9	49	82	5	239	27	18	25	28	1.98
55426333--55426515	100	1.8	100	95	0	330	26	19	25	28	1.98
55428700--55428829	40	3.2	40	82	4	165	23	24	28	23	2.00
55432452--55432519	29	2.4	30	80	14	81	8	11	16	63	1.52
55432457--55432519	14	4.4	14	76	11	56	9	12	12	65	1.48
55434182--55434354	51	3.5	48	83	5	238	26	19	26	28	1.98
55434182--55434354	49	3.5	49	84	5	224	26	19	26	28	1.98
55434182--55434362	99	1.8	100	95	1	328	25	19	25	28	1.99
55437331--55437453	43	2.9	43	91	0	192	28	30	17	22	1.97
55443294--55443323	8	3.8	8	90	0	51	43	26	26	3	1.70
55443709--55443853	54	2.7	54	91	3	220	17	24	22	34	1.96
55443712--55443871	27	5.9	27	79	12	159	19	25	21	34	1.96
55443712--55443871	81	2.0	81	81	7	191	19	25	21	34	1.96
55447699--55447812	23	5.0	23	70	10	81	15	6	33	44	1.72
55450522--55450660	40	3.5	40	84	4	149	24	29	21	24	1.99
55458555--55458693	40	3.5	40	86	4	158	23	29	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55458530--55458746	79	2.7	81	79	9	223	25	27	22	24	2.00
55461568--55461735	40	4.2	40	81	6	196	25	21	27	25	1.99
55468804--55468835	12	2.6	13	90	9	50	18	6	25	50	1.70
55474300--55474349	21	2.2	21	82	13	55	18	10	20	52	1.73
55476187--55476368	40	4.6	40	93	2	296	24	22	26	26	2.00
55478113--55478169	29	2.0	28	83	12	73	33	5	26	35	1.79
55479193--55479224	12	2.6	13	90	9	50	18	6	25	50	1.70
55481310--55481471	39	4.2	39	91	1	254	22	20	33	23	1.97
55481310--55481502	39	4.9	39	88	1	244	22	21	32	22	1.98
55489219--55489381	39	4.2	39	91	0	263	22	20	33	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425