Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  174  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52674522--52674720
46
4.2
47
70
8
120
31
17
25
25
1.97
52674560--52674733
94
1.9
94
82
0
222
31
16
25
27
1.96
52674754--52674928
49
3.6
48
76
5
165
28
21
26
24
1.99
52674652--52674928
142
1.9
145
80
7
325
27
19
27
25
1.99
52690440--52690539
27
3.5
28
84
5
121
34
28
13
25
1.93
52691383--52691407
7
3.6
7
100
0
50
60
28
0
12
1.32
52695520--52695690
93
1.8
93
91
0
279
30
29
18
21
1.97
52695519--52695687
46
3.7
46
76
10
182
31
28
17
21
1.97
52707747--52707807
30
2.0
30
83
0
77
31
22
8
37
1.84
52712281--52712341
30
2.0
30
83
0
77
31
22
8
37
1.84
52719129--52719177
17
2.8
18
74
22
50
24
18
22
34
1.96
52719999--52720181
40
4.6
39
75
7
138
26
23
27
22
1.99
52720038--52720226
80
2.4
81
77
4
186
23
24
29
22
1.99
52722745--52722792
24
2.0
23
96
4
87
18
16
39
25
1.91
52728100--52728250
40
3.8
40
77
6
146
27
23
26
22
2.00
52728137--52728266
40
3.2
40
77
4
138
24
23
27
23
2.00
52732329--52732440
27
4.1
27
84
7
138
15
24
23
37
1.93
52732329--52732440
54
2.1
54
88
3
163
15
24
23
37
1.93
52733602--52733645
16
2.8
16
96
3
81
47
18
18
15
1.83
52733618--52733669
24
2.1
25
89
10
81
48
19
21
11
1.80
52733619--52733669
16
3.2
16
88
0
66
47
19
21
11
1.81
52733880--52733994
29
4.0
28
79
4
113
28
15
28
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52733893--52734003
58
1.9
57
83
5
143
27
16
29
26
1.97
52738283--52738362
29
2.8
28
83
3
106
32
12
27
27
1.93
52739448--52739481
18
1.9
18
88
5
52
38
20
11
29
1.88
52749340--52749589
40
6.2
40
91
1
385
22
28
24
25
1.99
52755398--52755659
40
6.6
40
91
1
393
26
26
21
25
1.99
52758539--52758582
19
2.4
18
85
7
54
40
9
0
50
1.34
52765062--52765166
32
3.0
33
78
17
131
19
33
22
24
1.97
52765096--52765180
39
2.2
39
91
6
145
22
32
20
24
1.97
52772373--52772414
21
2.0
21
85
0
57
21
16
42
19
1.89
52779904--52779944
21
2.0
21
85
0
55
21
17
41
19
1.90
52789714--52789739
5
5.2
5
100
0
52
42
0
0
57
0.98
52793787--52793987
40
5.1
40
87
3
273
27
28
20
23
1.99
52796143--52796167
13
1.9
13
100
0
50
24
36
32
8
1.84
52798001--52798059
21
2.8
22
85
7
70
23
0
6
69
1.12
52798030--52798089
26
2.4
24
83
8
75
28
0
3
68
1.05
52807229--52807302
37
2.0
38
94
2
132
25
13
4
56
1.55
52815337--52815366
2
15.0
2
100
0
60
50
0
0
50
1.00
52818490--52818661
67
2.6
66
81
7
170
31
16
29
22
1.96
52818514--52818697
67
2.8
64
78
8
203
28
16
30
23
1.96
52821318--52821355
17
2.2
18
85
4
51
71
10
2
15
1.25
52823226--52823294
17
3.9
18
74
12
63
66
0
4
28
1.10
52823948--52824027
15
5.4
15
77
7
83
10
18
13
57
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52823939--52824026
30
3.0
30
80
11
92
10
18
15
55
1.68
52826403--52826576
46
3.8
46
80
11
196
20
21
29
27
1.98
52826407--52826581
45
3.8
46
80
13
225
20
21
29
28
1.98
52830030--52830056
10
2.7
10
100
0
54
37
22
0
40
1.54
52830449--52830512
31
2.1
31
93
0
110
23
28
23
25
2.00
52838706--52838738
13
2.6
13
90
4
50
39
0
12
48
1.40
52844533--52844611
25
3.3
25
66
16
76
31
29
5
34
1.79
52844483--52844832
49
7.3
49
92
1
541
29
29
8
32
1.87
52848756--52848825
6
11.2
6
74
17
54
15
4
1
78
0.98
52848739--52848819
42
1.9
42
82
9
103
14
6
1
77
1.02
52850149--52850173
1
25.0
1
100
0
50
100
0
0
0
0.00
52850958--52850983
2
13.0
2
100
0
52
50
0
0
50
1.00
52851346--52851370
2
12.5
2
100
0
50
48
0
0
52
1.00
52853357--52853385
2
14.5
2
100
0
58
48
0
0
51
1.00
52863918--52863951
17
2.0
17
94
0
59
55
5
8
29
1.54
52865829--52865876
25
1.9
25
86
0
69
33
25
16
25
1.96
52865919--52865977
20
3.0
20
97
0
109
37
10
20
32
1.86
52865923--52865977
11
5.4
11
70
16
55
38
10
20
30
1.87
52866028--52866168
24
6.0
24
90
7
200
28
22
22
26
1.99
52866029--52866169
70
2.0
70
89
5
214
28
22
22
26
1.99
52866358--52866421
31
2.1
31
96
0
119
39
15
21
23
1.92
52870635--52870707
27
2.6
29
80
8
87
21
35
20
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52870691--52870760
26
2.6
27
88
6
106
27
32
15
24
1.95
52878456--52878530
29
2.6
29
80
0
87
22
36
20
21
1.96
52878514--52878586
29
2.5
29
95
0
137
26
31
15
27
1.95
52878455--52878586
58
2.3
58
80
2
131
24
33
17
25
1.96
52881042--52881436
27
14.6
27
78
9
306
40
20
8
30
1.83
52881042--52881425
54
7.1
54
79
4
344
40
20
8
30
1.83
52881421--52881506
27
3.2
27
94
0
154
38
16
17
27
1.91
52881428--52881535
27
4.0
27
90
0
153
35
19
20
25
1.96
52881419--52881534
54
2.1
54
87
0
169
37
17
18
26
1.93
52896432--52896513
40
2.1
39
83
2
101
28
17
25
29
1.97
52908165--52908223
29
2.0
30
83
3
75
40
6
23
28
1.80
52912079--52912252
50
3.7
45
77
11
152
27
16
28
28
1.97
52912245--52912340
43
2.3
43
76
7
106
29
11
25
34
1.91
52916219--52916304
40
2.2
39
82
2
100
24
18
27
29
1.98
52925618--52925695
38
2.1
38
100
0
156
30
17
21
29
1.97
52936714--52936920
40
5.2
39
83
4
227
26
26
21
26
1.99
52940552--52940582
14
2.2
14
100
0
62
35
0
22
41
1.54
52944407--52944458
10
5.1
10
84
11
61
59
3
0
36
1.16
52944416--52944448
12
2.9
12
91
8
52
60
0
0
39
0.97
52944416--52944459
22
2.0
22
95
0
79
56
2
0
40
1.11
52949137--52949285
43
3.5
43
76
1
147
29
26
18
25
1.98
52949754--52949812
30
2.0
30
86
6
84
30
28
3
37
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52951181--52951324
40
3.5
40
89
1
207
35
25
15
23
1.94
52956948--52957017
27
2.5
28
97
2
133
28
12
27
31
1.93
52961449--52961486
19
2.0
19
94
0
67
36
18
10
34
1.85
52967402--52967509
46
2.3
46
98
0
207
31
27
19
21
1.97
52969895--52969983
30
3.0
30
79
11
94
56
15
17
10
1.67
52969895--52969977
15
5.6
14
73
10
58
55
16
18
9
1.68
52969906--52969983
15
5.2
15
75
9
70
55
15
17
11
1.69
52972909--52973075
88
1.9
89
92
3
284
27
29
20
21
1.98
52974350--52974470
27
4.5
27
88
1
163
42
22
9
26
1.83
52974350--52974470
54
2.3
54
89
1
181
42
22
9
26
1.83
52974356--52974499
54
2.7
53
84
7
157
41
21
9
27
1.83
52976975--52977021
23
2.0
23
100
0
94
44
21
0
34
1.52
52979689--52979766
28
2.8
28
77
11
81
29
32
14
24
1.94
52979978--52980044
16
4.2
16
90
0
107
11
19
19
49
1.79
52984593--52984668
22
3.3
22
66
16
64
32
10
30
26
1.90
52984615--52984693
25
3.3
25
64
16
67
35
5
27
31
1.79
52984590--52984884
47
6.3
47
91
1
484
33
8
30
26
1.87
52986674--52986743
28
2.5
28
86
4
97
28
12
25
32
1.93
52990719--52990929
40
5.3
39
85
6
246
24
27
22
25
2.00
52998883--52999146
40
6.7
40
83
6
281
23
28
23
24
2.00
52998927--52999147
120
1.8
119
87
0
325
24
27
23
24
2.00
53004845--53004870
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53005424--53005493
28
2.5
28
88
4
97
28
12
25
32
1.93
53009347--53009449
29
3.6
29
81
2
109
21
15
33
30
1.94
53012798--53012870
29
2.5
29
88
0
83
24
31
16
27
1.96
53020620--53020704
29
2.9
29
98
0
161
27
27
15
30
1.96
53023299--53023342
22
2.0
22
86
0
61
38
0
4
56
1.20
53032075--53032442
49
7.5
49
95
0
646
27
10
32
29
1.89
53032544--53032621
37
2.1
37
100
0
156
28
19
32
20
1.97
53036132--53036184
8
6.6
8
82
0
52
47
28
7
16
1.74
53036140--53036184
16
2.8
16
96
0
81
48
26
6
17
1.72
53036128--53036177
24
2.1
24
88
0
73
48
32
6
14
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425