Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  340  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105350818--105350872
21
2.6
21
80
8
58
23
1
36
38
1.66
105351035--105351072
13
2.8
14
80
8
51
26
0
28
44
1.54
105351174--105351198
7
3.6
7
100
0
50
24
0
32
44
1.54
105351134--105351198
14
4.6
14
77
7
51
20
1
40
38
1.62
105351508--105351537
11
2.8
11
95
5
53
83
0
0
16
0.65
105351508--105351584
19
3.9
19
77
12
59
75
2
3
18
1.07
105354529--105354588
30
2.0
30
86
0
84
23
16
30
30
1.96
105355512--105355653
76
1.9
76
95
0
257
23
26
14
35
1.94
105361545--105361782
47
5.1
47
89
3
336
33
10
28
27
1.89
105361545--105361782
94
2.5
94
92
1
370
33
10
28
27
1.89
105361660--105361735
22
3.3
22
66
28
59
31
11
30
26
1.92
105361545--105361828
94
3.0
94
88
3
340
33
10
29
27
1.89
105361545--105361828
141
2.0
141
84
2
365
33
10
29
27
1.89
105367266--105367309
23
1.9
23
85
0
61
40
2
11
45
1.53
105369556--105369655
19
5.3
18
73
11
67
60
0
3
37
1.12
105369556--105369655
9
10.7
9
72
11
67
60
0
3
37
1.12
105369556--105369655
28
3.6
28
82
6
123
60
0
3
37
1.12
105370012--105370205
85
2.3
84
81
7
230
34
6
17
42
1.74
105372059--105372099
22
1.9
21
85
5
55
14
4
19
60
1.51
105372264--105372301
18
2.1
18
100
0
76
26
21
23
28
1.99
105376491--105376873
126
3.0
126
92
0
615
34
19
19
25
1.96
105379472--105379506
18
1.9
18
94
0
61
40
2
28
28
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105381101--105381203
48
2.1
48
87
7
147
51
7
9
31
1.63
105381101--105381235
48
2.8
47
81
8
132
51
6
8
32
1.59
105383482--105383527
14
3.2
14
82
17
51
34
8
2
54
1.43
105384074--105384116
20
2.2
20
82
0
50
53
6
13
25
1.65
105386814--105386869
26
2.2
26
100
0
112
35
26
7
30
1.83
105393008--105393051
13
3.4
13
80
0
61
45
2
20
31
1.64
105393422--105393455
17
2.0
17
94
0
59
26
5
29
38
1.80
105404722--105404819
49
2.0
50
91
2
162
41
17
18
22
1.90
105407470--105407514
4
11.2
4
80
0
54
24
0
22
53
1.46
105407470--105407509
12
3.3
12
89
0
62
22
0
22
55
1.44
105417849--105417890
9
4.6
9
80
14
50
54
0
0
45
0.99
105418698--105418774
36
2.2
35
83
4
100
64
6
3
24
1.34
105418826--105418912
27
3.2
27
75
6
95
19
21
35
22
1.96
105418945--105418985
3
13.7
3
89
0
64
0
39
0
60
0.96
105418945--105419018
12
6.2
12
76
6
69
2
35
0
62
1.10
105419171--105419215
22
2.0
22
83
8
56
6
15
13
64
1.47
105420255--105420352
21
4.7
21
70
5
72
19
22
15
42
1.88
105420247--105420385
42
3.3
42
80
2
127
17
19
17
46
1.85
105420249--105420388
63
2.2
62
78
6
156
16
20
17
46
1.84
105421029--105421056
14
2.0
14
100
0
56
21
35
14
28
1.92
105430384--105430418
14
2.5
14
90
0
52
37
14
25
22
1.92
105435330--105435389
30
1.9
32
86
6
88
50
10
1
38
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105443413--105443442
8
3.9
8
95
4
53
0
6
0
93
0.35
105443413--105443442
15
1.9
16
93
6
53
0
6
0
93
0.35
105452979--105453100
58
2.1
58
80
8
133
45
5
21
27
1.74
105456521--105456612
44
2.1
44
81
0
103
30
21
19
28
1.98
105461046--105461070
11
2.3
11
100
0
50
52
28
0
20
1.47
105468638--105468772
41
3.2
42
72
17
100
31
25
16
26
1.96
105468617--105468780
43
3.9
41
76
7
132
33
26
15
24
1.95
105472079--105472145
33
2.0
33
100
0
134
38
26
14
19
1.91
105474356--105474386
16
1.9
16
93
0
53
25
0
6
67
1.14
105486663--105486772
26
4.2
26
97
0
184
36
24
5
33
1.79
105488414--105488495
42
1.9
42
90
7
130
35
28
14
21
1.93
105491264--105491310
17
2.8
16
75
18
51
36
12
0
51
1.40
105497972--105498002
2
15.5
2
100
0
62
48
0
0
51
1.00
105506250--105506283
2
17.5
2
93
6
61
47
0
0
52
1.00
105507128--105507196
8
8.0
8
75
15
66
36
0
18
44
1.50
105507133--105507198
18
3.7
18
84
11
100
34
0
21
43
1.53
105507126--105507195
35
2.0
35
100
0
140
37
0
20
42
1.52
105507542--105507599
20
3.0
20
80
9
68
46
0
24
29
1.53
105507688--105507717
2
15.0
2
100
0
60
50
0
0
50
1.00
105507780--105507834
27
2.0
28
96
3
103
30
10
10
47
1.73
105512579--105512603
5
5.0
5
100
0
50
60
20
20
0
1.37
105512970--105513003
2
17.5
2
87
6
52
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105516745--105516778
11
3.1
11
88
12
52
2
26
0
70
1.01
105518247--105518340
25
3.9
23
74
16
66
58
0
9
31
1.30
105518446--105518491
15
2.9
15
90
6
65
67
0
6
26
1.15
105518440--105518526
44
2.0
44
82
13
108
65
0
8
26
1.20
105518438--105518563
15
8.7
14
71
18
64
65
1
7
25
1.27
105518459--105518563
29
3.6
28
73
21
67
64
1
7
25
1.30
105519525--105520289
86
8.9
86
91
1
1108
19
22
21
36
1.95
105520378--105520772
84
4.7
84
90
0
603
18
24
22
34
1.96
105520777--105520878
44
2.3
46
83
11
124
29
20
17
32
1.96
105520890--105520986
45
2.2
44
87
7
133
28
22
17
30
1.97
105520781--105521194
178
2.3
178
90
1
625
27
21
18
32
1.97
105521068--105521164
45
2.2
45
83
3
115
27
20
17
34
1.95
105527105--105527157
27
2.0
27
85
7
72
52
0
11
35
1.37
105527167--105527219
24
2.0
24
86
13
70
58
3
9
28
1.47
105527167--105527221
28
2.0
28
82
13
69
60
3
9
27
1.44
105529694--105529924
125
1.8
125
83
0
300
36
17
16
29
1.92
105530273--105530318
15
2.9
15
90
6
65
67
0
6
26
1.15
105530240--105530306
21
3.0
23
76
21
72
64
0
5
29
1.17
105530267--105530353
44
2.0
44
82
13
108
65
0
8
26
1.20
105530265--105530393
15
8.9
14
70
20
63
66
1
6
24
1.25
105530286--105530392
29
3.7
29
72
12
76
65
1
7
25
1.29
105536411--105536455
19
2.2
21
88
7
67
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105536479--105536519
21
2.0
21
85
9
57
63
0
0
36
0.95
105536471--105536521
16
3.3
16
75
8
61
64
0
0
35
0.94
105542812--105542903
46
2.0
44
83
8
114
40
22
4
32
1.74
105542882--105542932
16
3.2
16
91
0
84
25
29
5
39
1.79
105546792--105546819
14
2.0
14
100
0
56
35
28
7
28
1.84
105552049--105552080
2
16.0
2
100
0
64
50
0
0
50
1.00
105554175--105554239
29
2.2
30
78
13
73
41
6
26
26
1.79
105557051--105557291
129
1.9
129
85
1
340
33
15
26
24
1.95
105557747--105557771
12
2.1
12
100
0
50
48
0
0
52
1.00
105557810--105557858
20
2.7
18
77
22
57
51
4
2
42
1.32
105559502--105559535
16
2.1
16
94
0
59
76
8
5
8
1.15
105563753--105563794
2
22.0
2
80
9
52
50
0
0
50
1.00
105563744--105563780
18
2.1
18
100
0
74
48
0
0
51
1.00
105564119--105564165
9
5.2
9
86
0
67
44
21
8
25
1.80
105564228--105564258
13
2.4
13
94
0
53
9
3
48
38
1.52
105566322--105566378
26
2.2
26
81
6
62
40
0
3
56
1.17
105566530--105566555
2
13.0
2
100
0
52
50
0
0
50
1.00
105575786--105575840
16
3.4
16
75
12
58
63
0
3
32
1.12
105576992--105577024
16
2.1
16
100
0
66
51
6
0
42
1.26
105582504--105582707
48
4.4
48
72
16
176
26
20
22
30
1.98
105590342--105590493
74
2.1
74
96
0
277
25
17
25
31
1.97
105592472--105592595
33
3.9
32
71
15
103
29
16
27
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105592338--105592523
101
1.8
100
85
6
259
35
15
22
26
1.94
105592371--105592560
101
1.9
101
81
2
229
32
16
25
25
1.96
105597961--105598021
30
2.0
30
90
0
95
37
8
24
29
1.84
105600487--105600523
19
1.9
19
94
0
65
27
24
13
35
1.93
105601036--105601060
13
1.9
13
100
0
50
16
16
40
28
1.89
105604785--105604838
26
2.1
26
100
0
108
11
18
7
62
1.50
105605664--105605741
33
2.4
33
79
12
97
33
16
23
26
1.96
105612303--105612391
26
3.6
23
81
13
88
67
1
0
31
0.98
105612315--105612390
23
3.2
23
83
9
82
65
0
0
34
0.93
105613246--105613306
29
2.1
30
90
3
97
24
1
13
60
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425