genome.fa.s8.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  163  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49606709--49606892	78	2.3	81	86	6	252	26	27	22	24	2.00
49610953--49611173	40	5.6	41	81	9	255	25	23	26	24	2.00
49614776--49614960	40	4.6	40	80	7	214	25	22	27	24	2.00
49617981--49618005	2	12.5	2	100	0	50	52	0	0	48	1.00
49621286--49621313	14	2.0	14	100	0	56	35	7	21	35	1.81
49621919--49621981	29	2.2	29	97	0	117	42	7	14	34	1.75
49625840--49625982	52	2.8	51	88	6	211	30	29	13	26	1.95
49629843--49630026	40	4.6	39	75	6	138	26	23	27	22	2.00
49629883--49630071	80	2.4	81	77	4	186	23	24	29	22	1.99
49641426--49641557	29	4.6	29	84	1	149	25	16	32	25	1.96
49643212--49643684	27	17.7	26	79	8	384	38	18	10	32	1.85
49643233--49643684	81	5.6	80	81	6	436	38	18	10	32	1.85
49643212--49643684	54	8.8	54	80	6	439	38	18	10	32	1.85
49643636--49643727	27	3.4	27	92	0	130	36	18	17	27	1.93
49647517--49647550	13	2.6	13	100	0	68	17	52	17	11	1.73
49649113--49649212	19	5.3	19	87	7	150	35	16	10	39	1.82
49649104--49649212	36	2.8	37	86	9	139	36	15	10	37	1.81
49649579--49649709	45	2.9	45	85	3	149	26	29	12	32	1.92
49649783--49650077	134	2.2	134	91	0	473	28	23	16	32	1.96
49649783--49650121	44	7.6	44	71	10	215	28	23	15	32	1.96
49650043--49651199	44	26.4	44	68	17	319	30	25	15	29	1.95
49650199--49650586	87	4.4	87	89	1	564	32	26	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49650377--49651111	306	2.4	306	92	0	1182	29	25	15	29	1.96
49650711--49650847	41	3.2	41	65	20	109	32	22	16	28	1.95
49650680--49650892	87	2.4	87	92	0	354	30	25	16	27	1.97
49650768--49651199	219	2.0	219	88	0	648	28	26	15	28	1.96
49650896--49651216	175	1.8	175	89	1	509	28	25	14	30	1.95
49652131--49652178	1	48.0	1	78	0	51	0	10	0	89	0.48
49652130--49652178	20	2.5	19	93	6	89	0	12	0	87	0.54
49657326--49657416	19	4.7	21	83	9	72	37	17	9	35	1.83
49657336--49657416	19	4.3	19	87	9	121	35	17	9	37	1.83
49657337--49657410	36	2.0	38	92	5	125	35	16	10	37	1.83
49657339--49657421	36	2.3	35	84	14	107	34	18	9	37	1.83
49660833--49660923	37	2.4	37	92	1	155	24	32	18	24	1.97
49661019--49661610	49	11.4	49	79	13	623	28	33	9	28	1.89
49661210--49661243	17	2.0	17	100	0	68	17	35	23	23	1.95
49661161--49661292	66	2.0	66	95	0	237	26	34	12	27	1.92
49661112--49661341	115	2.0	115	97	0	433	28	33	10	27	1.90
49661063--49661554	164	3.0	164	91	4	730	28	33	9	28	1.89
49661019--49661610	213	2.8	213	97	0	1085	28	33	9	28	1.89
49661423--49661456	17	2.0	17	100	0	68	17	35	23	23	1.95
49661325--49661554	115	2.0	115	93	0	388	26	33	10	28	1.90
49661374--49661505	66	2.0	66	93	0	228	24	34	12	28	1.92
49664403--49664501	41	2.4	41	79	11	105	25	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49664984--49665378	29	13.6	29	95	0	709	24	31	15	28	1.96
49667439--49667529	37	2.4	37	92	1	155	24	32	18	24	1.97
49667625--49668167	49	10.4	49	78	14	525	28	33	9	28	1.89
49667816--49667849	17	2.0	17	100	0	68	17	35	23	23	1.95
49667767--49667898	66	2.0	66	95	0	237	26	34	12	27	1.92
49667718--49668062	115	3.0	115	87	6	454	27	33	10	28	1.90
49667669--49668160	164	3.0	164	97	0	903	27	33	10	28	1.89
49667625--49668167	213	2.6	212	89	4	803	28	33	9	28	1.89
49667980--49668013	17	2.0	17	100	0	68	17	35	23	23	1.95
49667931--49668062	66	2.0	66	93	0	228	24	34	12	28	1.92
49667767--49668111	115	3.0	115	86	6	427	27	33	10	28	1.90
49671050--49671124	38	2.0	38	82	15	93	24	22	13	40	1.90
49671333--49671544	24	9.0	24	87	5	299	28	20	21	29	1.98
49671333--49671545	71	3.0	70	89	4	304	28	20	22	29	1.98
49671333--49671544	47	4.5	48	89	4	299	28	20	21	29	1.98
49671602--49671658	9	5.9	9	73	15	51	35	21	8	35	1.84
49671590--49671660	20	3.5	20	94	0	124	32	21	11	35	1.89
49671595--49671649	11	5.4	11	70	16	55	30	20	12	36	1.90
49671697--49671744	25	1.9	25	82	0	60	25	14	25	35	1.94
49672984--49673541	27	20.7	27	84	4	543	40	9	22	27	1.84
49672986--49673541	81	6.9	81	84	4	665	40	9	22	27	1.84
49672986--49673541	54	10.3	54	85	2	654	40	9	22	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49685689--49685796	43	2.5	42	85	5	137	23	21	25	30	1.99
49693785--49694458	48	14.0	48	93	3	1162	35	6	26	31	1.82
49694599--49694743	37	3.9	37	92	0	236	23	17	31	27	1.97
49697944--49698100	43	3.7	43	88	3	244	28	28	17	25	1.97
49699544--49699613	27	2.5	28	88	2	106	31	25	14	28	1.95
49707469--49707538	27	2.5	28	88	2	106	31	25	14	28	1.95
49711350--49711386	18	2.1	18	100	0	74	32	0	21	45	1.52
49711860--49711960	43	2.4	42	74	11	98	29	18	21	29	1.97
49713833--49713960	43	3.0	43	85	7	172	28	10	25	35	1.90
49718630--49719156	27	19.6	27	83	3	605	27	21	9	41	1.84
49720389--49720435	24	2.0	24	91	0	76	34	25	14	25	1.94
49720482--49720536	11	5.4	11	70	16	55	36	12	20	30	1.90
49720478--49720541	20	3.2	20	95	0	110	34	10	21	32	1.89
49720586--49720799	24	9.0	24	92	3	319	28	22	21	27	1.99
49720588--49720778	47	4.1	47	94	2	330	28	22	20	28	1.99
49720992--49721081	30	2.7	32	79	17	103	34	17	24	23	1.96
49723725--49724183	27	17.6	27	86	7	583	28	22	8	39	1.84
49723725--49724183	53	8.8	54	84	8	583	28	22	8	39	1.84
49723725--49724183	80	5.9	81	85	6	592	28	22	8	39	1.84
49723959--49724156	52	4.1	45	74	17	132	29	23	7	39	1.81
49724135--49724194	27	2.2	27	81	0	66	33	23	6	36	1.81
49725424--49725471	25	1.9	25	91	0	78	33	27	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49725510--49725566	9	5.9	9	73	15	51	35	8	21	35	1.84
49725508--49725578	20	3.5	20	94	0	124	35	11	21	32	1.89
49725519--49725573	11	5.4	11	70	16	55	36	12	20	30	1.90
49725624--49725884	23	11.1	23	95	2	432	27	22	21	28	1.99
49725623--49725906	24	12.0	23	93	3	426	28	22	21	27	1.99
49725622--49725905	94	3.0	94	96	2	507	27	22	21	27	1.99
49727006--49727077	32	2.3	32	87	2	110	15	30	34	19	1.93
49730328--49730489	49	3.3	49	96	1	301	30	28	7	33	1.85
49732824--49732898	28	2.7	28	85	8	107	29	30	12	28	1.92
49732909--49732984	40	1.9	40	88	0	116	32	25	15	26	1.95
49733193--49733231	21	1.9	20	84	5	51	38	20	0	41	1.53
49734749--49734842	31	3.1	31	80	4	111	47	13	18	20	1.82
49734704--49734790	6	14.3	6	81	11	106	49	14	18	17	1.80
49734704--49734842	49	2.8	49	85	3	181	48	13	18	19	1.81
49735020--49735055	2	18.0	2	100	0	72	50	0	0	50	1.00
49735375--49735809	27	16.2	27	88	3	583	42	7	20	28	1.80
49735798--49735983	27	6.9	27	83	6	153	30	8	21	39	1.82
49735805--49735983	54	3.3	54	80	2	180	29	7	21	40	1.81
49735978--49736048	27	2.6	27	88	0	106	28	23	18	29	1.98
49739391--49739557	40	4.2	40	77	7	144	23	26	22	26	2.00
49743766--49743803	20	1.9	20	88	0	58	34	2	10	52	1.50
49745426--49745480	28	2.0	28	100	0	110	47	21	10	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49754287--49754369	29	2.9	29	94	0	139	27	14	31	26	1.95
49759142--49759211	27	2.5	28	97	2	133	28	12	27	31	1.93
49762636--49762777	41	3.5	41	91	0	230	30	26	19	23	1.98
49763946--49763972	13	2.1	13	100	0	54	48	22	0	29	1.51
49768071--49768289	41	5.4	41	78	11	227	19	28	16	35	1.94
49768043--49768289	81	3.0	81	82	6	252	19	28	16	35	1.93
49768075--49768289	82	2.7	81	83	2	263	20	28	16	34	1.94
49768074--49768309	122	1.9	121	82	9	293	19	28	16	35	1.94
49771476--49771544	27	2.6	27	80	0	75	30	36	15	17	1.91
49774373--49774528	43	3.6	44	76	14	173	24	19	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425