genome.fa.s8.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  144  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43821608--43821844	47	5.0	47	89	1	332	33	10	29	27	1.89
43821652--43821776	25	5.2	24	62	30	63	32	11	28	28	1.91
43821677--43821751	22	3.3	22	66	23	64	32	13	29	25	1.93
43821608--43821844	94	2.5	93	90	1	366	33	10	29	27	1.89
43822802--43822831	2	15.0	2	100	0	60	50	0	0	50	1.00
43826284--43826473	29	6.6	29	85	2	240	25	32	16	25	1.96
43833536--43833724	29	6.6	29	84	3	222	25	32	16	25	1.96
43837073--43837108	19	1.9	19	88	5	56	33	0	0	66	0.92
43841933--43842091	67	2.3	70	78	10	186	35	13	29	21	1.92
43843465--43843635	93	1.8	93	96	0	315	28	29	21	21	1.98
43843460--43843632	46	3.7	46	80	13	219	28	28	21	21	1.98
43844055--43844114	30	2.0	30	90	0	93	30	25	8	36	1.85
43851042--43851212	93	1.8	93	92	2	290	29	28	21	21	1.98
43851037--43851209	46	3.7	46	78	14	194	30	27	20	21	1.98
43851631--43851690	30	2.0	30	90	0	93	30	25	8	36	1.85
43852956--43852995	19	2.1	19	95	0	71	0	17	5	77	0.94
43854384--43854448	22	3.0	22	82	6	71	18	20	13	47	1.82
43859474--43859532	3	20.0	3	89	10	95	32	1	0	66	1.02
43860441--43860495	28	2.0	28	82	7	67	30	0	25	43	1.55
43861122--43861171	13	3.8	13	91	2	73	26	2	22	50	1.60
43865274--43865442	48	3.6	48	84	4	245	22	28	19	28	1.98
43868755--43868804	20	2.6	19	84	9	57	36	22	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43871918--43871944	14	1.9	14	100	0	54	0	0	25	74	0.83
43873576--43873638	25	2.4	25	84	5	72	34	9	12	42	1.76
43881918--43882077	29	5.5	30	88	8	222	27	25	13	33	1.94
43881918--43882077	59	2.8	57	89	4	223	27	25	13	33	1.94
43887361--43887407	24	2.0	24	91	0	76	8	12	34	44	1.73
43887444--43887668	110	2.1	109	82	0	270	26	16	24	33	1.95
43905995--43906124	40	3.2	40	82	2	172	24	27	23	24	2.00
43906011--43906161	40	3.8	39	81	6	153	22	27	23	27	1.99
43905995--43906161	80	2.1	79	83	7	205	23	26	22	26	2.00
43908525--43908602	29	2.7	29	83	0	102	26	17	33	21	1.96
43916381--43916458	29	2.7	29	83	0	102	26	17	33	21	1.96
43936196--43936256	30	2.0	30	90	3	95	29	19	14	36	1.92
43947359--43947542	40	4.6	39	75	6	138	26	23	27	22	2.00
43947399--43947587	80	2.4	81	77	4	186	23	24	29	22	1.99
43955479--43955662	40	4.6	39	75	6	138	26	23	27	22	2.00
43955519--43955707	80	2.4	81	77	4	186	23	24	29	22	1.99
43962567--43962593	2	13.5	2	100	0	54	51	0	0	48	1.00
43963302--43963446	40	3.6	40	86	4	202	25	25	26	22	2.00
43971331--43971475	40	3.6	40	83	6	177	24	24	25	25	2.00
43979754--43979860	44	2.5	42	83	6	126	23	17	26	32	1.97
43979754--43979868	42	2.7	44	76	15	125	22	18	26	32	1.97
43981419--43981456	12	3.3	12	85	10	53	63	0	7	28	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43988127--43988165	18	2.0	21	85	14	57	35	2	25	35	1.70
43997162--43997368	53	3.8	54	81	1	245	21	23	16	38	1.93
43999247--43999321	5	13.6	5	72	22	53	20	1	1	77	0.92
43999245--43999316	12	6.3	12	75	13	64	20	1	1	76	0.94
44001033--44001287	55	4.8	55	82	7	280	21	25	17	34	1.95
44001078--44001280	108	1.9	110	90	4	331	23	25	18	32	1.97
44004568--44004740	46	3.7	46	72	14	158	29	28	19	21	1.98
44004621--44004783	47	3.5	47	70	17	158	30	30	17	21	1.96
44004575--44004826	93	2.7	93	90	1	380	30	29	17	22	1.97
44004567--44004833	46	5.8	45	66	18	136	30	28	17	22	1.97
44010850--44010887	16	2.4	16	86	0	58	28	15	18	36	1.92
44013214--44013377	40	4.1	40	82	6	188	25	20	28	26	1.99
44013214--44013391	80	2.2	80	83	4	209	25	20	27	25	1.99
44021335--44021498	40	4.1	40	82	6	188	25	20	28	26	1.99
44021335--44021512	80	2.2	80	83	4	209	25	20	27	25	1.99
44027843--44027994	37	4.1	37	77	5	128	38	32	10	19	1.85
44027859--44027995	37	3.7	37	79	3	150	38	32	10	18	1.85
44028844--44028913	36	1.9	36	97	0	131	51	2	24	21	1.61
44034385--44034536	29	5.2	29	90	0	214	22	23	31	23	1.98
44035438--44035558	37	3.3	35	79	11	102	38	29	12	19	1.89
44036863--44036897	16	2.2	16	89	0	52	51	5	8	34	1.56
44037524--44037621	39	2.5	39	88	0	151	43	22	5	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44043382--44043584	47	4.3	47	92	1	298	33	7	30	29	1.86
44045903--44046050	46	3.2	46	87	0	215	33	17	25	23	1.96
44046403--44047150	44	15.8	48	67	17	313	30	20	22	26	1.98
44046401--44047150	143	5.3	142	87	2	999	31	20	22	26	1.98
44050622--44050684	13	4.8	13	72	5	56	30	3	3	63	1.25
44050715--44050783	10	6.6	10	70	15	50	31	7	2	57	1.40
44050930--44050976	14	3.1	15	79	20	53	40	4	0	55	1.19
44059800--44059858	13	4.1	15	75	20	54	30	5	0	64	1.15
44059784--44059915	26	5.1	24	74	21	90	31	6	2	60	1.33
44060085--44060183	46	2.2	46	81	7	112	28	4	7	60	1.41
44062298--44062327	15	2.0	15	100	0	60	20	20	20	40	1.92
44064682--44064747	14	4.9	14	67	16	50	7	19	0	72	1.08
44064651--44064735	39	2.2	39	81	10	95	5	18	0	75	1.00
44064686--44064751	26	2.5	26	87	7	89	7	21	0	71	1.11
44064834--44064878	20	2.3	19	84	3	54	0	44	0	55	0.99
44073286--44073453	40	4.2	40	80	1	167	23	27	23	25	2.00
44073302--44073451	80	1.9	80	83	5	196	22	27	24	26	2.00
44081702--44081740	18	2.2	18	95	0	69	33	0	15	51	1.44
44085662--44085795	64	2.1	64	95	0	241	37	11	4	47	1.60
44085675--44085809	64	2.1	64	86	4	193	40	8	4	46	1.55
44085854--44085912	24	2.5	24	88	2	84	23	18	8	49	1.75
44085954--44086614	240	2.7	240	97	0	1241	33	18	15	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44089438--44089612	46	3.8	46	80	10	221	28	28	21	21	1.99
44089446--44089616	93	1.8	93	94	0	306	28	28	21	21	1.99
44095755--44095853	28	3.5	29	83	6	114	30	27	15	27	1.96
44103777--44103846	28	2.5	28	88	4	97	30	24	15	30	1.96
44105438--44105568	30	4.5	30	86	8	171	32	13	25	28	1.94
44105438--44105568	58	2.2	58	86	4	174	32	13	25	28	1.94
44109535--44109616	31	2.5	33	80	7	96	14	4	19	60	1.51
44109693--44109929	43	5.7	43	78	8	274	26	28	21	23	1.99
44110864--44110922	27	2.1	28	81	9	68	61	11	0	27	1.31
44120857--44120892	19	1.9	19	88	5	56	66	0	0	33	0.92
44124248--44124437	29	6.6	29	84	2	231	25	16	32	25	1.96
44131492--44131598	42	2.5	42	96	0	196	28	14	33	22	1.94
44131606--44131675	27	2.5	28	86	2	97	27	14	25	32	1.94
44136035--44136187	40	3.8	40	79	5	148	25	28	23	22	2.00
44149565--44149712	40	3.7	40	84	3	172	25	23	27	22	2.00
44149565--44149726	80	2.0	80	84	2	209	24	22	27	25	2.00
44151411--44151636	40	5.7	40	85	4	246	25	25	20	28	1.99
44151448--44151636	80	2.4	80	86	7	276	25	25	19	29	1.99
44156598--44156820	47	4.8	46	83	11	251	28	18	30	22	1.97
44156562--44156820	140	1.8	141	86	5	373	28	18	29	23	1.98
44161243--44161275	3	11.0	3	100	0	66	66	0	33	0	0.92
44162703--44162744	21	2.0	21	100	0	84	47	0	9	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44162688--44162714	2	13.5	2	100	0	54	51	0	0	48	1.00
44163293--44163320	10	2.8	10	100	0	56	92	0	0	7	0.37
44163528--44163580	24	2.3	24	87	6	74	52	1	1	43	1.23
44163550--44163597	20	2.4	19	79	6	51	47	4	0	47	1.21
44163625--44163665	20	2.2	20	83	12	52	34	2	7	56	1.40
44163841--44163873	16	2.0	17	88	5	50	45	0	9	45	1.35
44168290--44168463	40	4.3	40	80	8	167	26	21	27	24	1.99
44172627--44172784	40	4.0	41	84	6	184	26	25	20	27	1.99
44172599--44172784	80	2.3	80	78	10	193	26	25	20	26	1.99
44180558--44180779	46	4.8	46	81	9	263	21	19	28	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425