Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  352  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108859707--108859836
58
2.2
59
82
12
160
41
0
2
55
1.18
108860663--108860693
6
5.3
6
96
3
55
32
51
0
16
1.44
108862257--108862319
31
2.0
31
96
0
117
49
14
25
11
1.76
108864558--108864623
29
2.3
29
97
0
123
31
24
21
22
1.98
108869072--108869106
14
2.3
16
90
9
56
11
8
0
80
0.92
108869070--108869110
15
2.6
16
85
14
59
14
7
0
78
0.96
108869099--108869149
21
2.4
21
83
0
57
27
3
1
66
1.20
108869649--108869681
5
6.6
5
100
0
66
81
0
0
18
0.68
108871188--108871225
20
1.9
20
94
0
67
71
2
5
21
1.19
108873798--108873822
7
3.6
7
100
0
50
88
0
0
12
0.53
108874108--108874161
24
2.3
23
83
3
63
42
11
0
46
1.39
108875825--108875857
6
5.5
6
100
0
66
0
51
0
48
1.00
108879821--108879852
5
6.4
5
100
0
64
40
0
0
59
0.97
108879893--108879926
13
2.5
13
90
4
50
58
2
38
0
1.13
108879904--108879937
17
2.1
17
94
5
61
64
0
35
0
0.94
108881158--108881196
18
2.1
19
90
4
62
41
0
10
48
1.37
108881436--108881570
39
3.4
39
74
6
112
23
20
28
28
1.99
108881693--108881733
19
2.2
19
87
12
59
46
0
24
29
1.53
108886049--108886090
16
2.7
15
82
17
50
42
0
2
54
1.13
108886472--108886496
2
12.5
2
100
0
50
48
0
0
52
1.00
108887862--108887887
2
13.0
2
100
0
52
50
0
0
50
1.00
108888867--108888897
13
2.4
13
100
0
62
48
51
0
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108893681--108893715
17
2.1
17
100
0
70
54
5
5
34
1.48
108894478--108894526
20
2.6
18
78
15
62
46
0
0
53
1.00
108894764--108894824
31
2.0
31
96
0
113
24
16
9
49
1.76
108899883--108899907
2
12.5
2
100
0
50
48
0
0
52
1.00
108904334--108904367
10
3.6
9
88
11
50
50
0
0
50
1.00
108907135--108907163
12
2.5
12
94
5
51
41
20
0
37
1.53
108911270--108911317
19
2.7
18
78
18
55
70
0
2
27
0.98
108911270--108911318
13
4.1
12
80
15
57
71
0
2
26
0.97
108911261--108911318
24
2.3
24
82
11
64
70
1
3
24
1.12
108914956--108915001
22
2.1
22
91
0
74
41
19
8
30
1.82
108916526--108916627
51
2.0
51
98
0
195
34
14
25
25
1.94
108926384--108926445
29
2.1
29
90
0
97
27
29
14
29
1.95
108941154--108941200
22
2.1
22
96
0
85
21
19
36
23
1.95
108944431--108944477
2
23.5
2
100
0
94
48
0
0
51
1.00
108945122--108945163
22
1.9
22
95
0
75
28
4
26
40
1.76
108946682--108946731
21
2.4
21
86
0
64
26
30
30
14
1.94
108948624--108948685
27
2.3
28
80
8
83
33
0
3
62
1.11
108948728--108948773
19
2.3
20
77
3
58
65
4
0
30
1.12
108950978--108951006
2
14.5
2
100
0
58
48
0
0
51
1.00
108951150--108951183
15
2.3
15
90
5
52
47
0
2
50
1.16
108953482--108953515
17
2.0
17
88
0
50
41
0
0
58
0.98
108957250--108957300
24
2.1
24
100
0
102
19
5
11
62
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108957373--108957415
22
2.0
22
86
4
61
32
13
23
30
1.93
108960640--108960719
39
2.1
39
95
0
142
33
11
27
27
1.91
108970959--108971044
31
2.9
29
78
13
93
43
10
10
36
1.74
108972189--108972230
2
21.0
2
100
0
84
50
0
0
50
1.00
108977147--108977192
23
2.0
23
87
8
67
36
15
6
41
1.73
108983789--108983836
25
1.9
25
83
8
62
50
0
4
45
1.21
108985032--108985062
2
15.5
2
100
0
62
51
0
0
48
1.00
108985294--108985320
2
13.5
2
100
0
54
48
0
0
51
1.00
108987143--108987181
2
19.5
2
89
10
62
46
0
2
51
1.14
108988599--108988636
20
1.9
19
94
5
67
39
5
0
55
1.23
108998399--108998451
3
17.7
3
100
0
106
67
0
0
32
0.91
108998553--108998616
23
3.0
20
82
13
74
62
1
10
25
1.37
108998566--108998611
15
2.9
15
83
6
56
63
2
10
23
1.38
108998560--108998616
29
2.0
27
81
18
64
63
1
12
22
1.38
108998604--108998637
14
2.4
14
90
9
52
67
0
5
26
1.13
109000823--109000868
6
7.8
6
83
11
60
50
0
15
34
1.44
109001196--109001237
5
8.2
5
91
2
57
38
0
23
38
1.55
109001646--109001838
45
4.3
45
89
1
271
19
19
20
40
1.92
109002014--109002198
18
10.3
18
74
13
139
34
12
15
37
1.85
109003262--109003354
36
2.6
36
100
0
186
56
0
4
38
1.19
109003275--109003331
17
3.2
17
72
18
62
57
0
7
35
1.26
109003853--109003889
9
4.1
9
92
0
65
29
10
13
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109008818--109008887
35
2.0
35
100
0
140
31
2
17
48
1.61
109008829--109008885
18
3.2
18
65
5
53
29
3
19
47
1.66
109015909--109015995
27
3.2
27
80
9
115
18
24
22
34
1.96
109017167--109017317
53
2.8
53
89
4
214
29
27
16
25
1.97
109018673--109018749
27
2.9
26
86
7
93
18
23
22
36
1.95
109021348--109021511
71
2.3
71
100
0
328
18
28
17
35
1.94
109021348--109021545
71
2.8
70
91
3
258
20
28
17
33
1.95
109026601--109026632
2
16.0
2
100
0
64
50
0
0
50
1.00
109029315--109029379
34
1.9
34
93
0
112
27
16
9
46
1.78
109030455--109030529
32
2.3
32
84
4
98
26
40
5
28
1.78
109030629--109030717
42
2.3
39
84
9
119
31
30
0
38
1.58
109033166--109033222
29
1.9
30
85
3
80
31
1
1
64
1.13
109033167--109033234
30
2.3
28
80
9
73
30
4
1
63
1.23
109033247--109033329
12
7.3
12
74
20
63
30
0
3
66
1.09
109033255--109033327
19
4.1
19
71
16
66
30
0
4
65
1.11
109033248--109033329
33
2.4
33
89
4
119
30
0
3
65
1.09
109033343--109033383
13
2.9
15
75
10
50
41
4
0
53
1.22
109033631--109033688
22
2.5
23
78
16
57
18
0
12
68
1.19
109033698--109033732
18
1.9
18
88
0
52
17
0
8
74
1.06
109047422--109047475
22
2.5
22
100
0
108
20
14
0
64
1.28
109047415--109047478
22
2.6
25
78
19
80
20
12
0
67
1.23
109049572--109049615
3
14.7
3
100
0
88
34
65
0
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109052030--109052116
26
3.3
26
95
0
147
32
9
21
36
1.85
109053713--109053853
27
5.2
27
81
8
162
17
21
24
36
1.94
109053713--109053853
54
2.6
53
90
2
210
17
21
24
36
1.94
109066247--109066275
15
1.9
15
100
0
58
31
13
27
27
1.94
109072580--109072621
20
2.1
20
86
0
57
35
11
2
50
1.52
109075804--109075962
43
3.7
43
78
10
173
32
27
16
23
1.96
109079584--109079627
19
2.3
19
96
4
79
29
40
18
11
1.85
109085072--109085131
15
3.9
15
79
12
68
56
3
5
35
1.37
109085164--109085230
17
3.8
17
68
24
50
67
7
1
23
1.25
109091095--109091206
29
3.9
29
86
2
127
14
28
31
25
1.95
109091133--109091206
29
2.6
29
95
0
130
13
28
29
28
1.94
109093883--109093932
11
4.5
11
87
7
75
18
2
0
80
0.82
109093883--109093929
6
8.3
6
88
6
64
17
2
0
80
0.80
109095562--109095591
14
2.1
14
100
0
60
20
20
6
53
1.67
109097584--109097724
27
5.2
27
81
11
173
17
23
23
35
1.95
109097581--109097724
54
2.7
54
93
2
236
17
23
23
35
1.95
109097597--109097741
27
5.4
27
77
17
108
20
24
20
35
1.95
109097584--109097741
81
2.0
80
82
8
196
18
24
21
35
1.96
109101155--109101257
17
6.6
16
66
26
53
42
1
2
52
1.27
109101167--109101215
18
2.5
19
87
9
64
42
0
2
55
1.11
109106890--109106995
44
2.5
42
80
7
106
27
15
23
33
1.94
109106970--109107028
30
2.0
30
96
0
109
25
18
23
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109110247--109110302
26
2.2
26
96
0
103
30
5
26
37
1.79
109114422--109114498
23
3.7
21
74
17
63
63
3
2
29
1.25
109114550--109114593
23
1.9
23
81
9
54
45
2
4
47
1.35
109116174--109116754
44
13.2
44
71
14
376
28
25
15
29
1.96
109116176--109116605
176
2.4
176
89
1
666
29
26
14
29
1.95
109116300--109116754
220
2.1
220
85
2
610
27
25
16
31
1.96
109117694--109117751
5
9.8
6
80
15
52
0
15
0
84
0.62
109117694--109117753
7
8.7
7
77
15
63
0
15
0
85
0.61
109117709--109117753
5
9.8
5
88
11
62
0
13
0
86
0.57
109130692--109130782
19
4.9
19
92
8
161
37
10
15
36
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425