genome.fa.s8.2.7.7.80.10.50.1000.229.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  229  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69791006--69791084	6	13.2	6	77	19	69	45	3	0	50	1.19
69792863--69792902	21	2.0	20	85	14	55	52	22	0	25	1.47
69794597--69794669	29	2.5	29	93	0	101	26	31	16	26	1.96
69797812--69797841	13	2.3	13	100	0	60	13	0	6	80	0.91
69802292--69802361	27	2.5	28	95	2	124	28	14	27	30	1.95
69802292--69802373	27	3.0	27	85	8	78	29	15	24	30	1.96
69809477--69809546	27	2.5	28	95	2	124	28	14	27	30	1.95
69809477--69809558	27	3.0	27	85	8	78	29	15	24	30	1.96
69816675--69816744	27	2.5	28	95	2	124	28	14	27	30	1.95
69816675--69816756	27	3.0	27	85	8	78	29	15	24	30	1.96
69819650--69819690	21	1.9	22	90	5	66	70	12	2	14	1.26
69819655--69819708	28	2.0	27	82	10	65	74	9	1	14	1.15
69821387--69821457	35	2.0	35	94	0	124	32	30	8	28	1.87
69824929--69824988	6	9.3	6	75	20	50	13	1	6	78	1.02
69824953--69824993	21	1.9	22	95	5	75	14	2	9	73	1.19
69827235--69827342	45	2.4	45	80	8	116	41	19	21	17	1.90
69829764--69829884	47	2.5	48	76	10	122	27	21	27	23	1.99
69833646--69833715	27	2.6	27	93	2	113	30	28	14	27	1.95
69841150--69841219	27	2.6	27	93	2	113	30	28	14	27	1.95
69843941--69843989	22	2.3	22	82	10	57	46	22	8	22	1.77
69853784--69853829	20	2.3	20	92	0	74	19	36	17	26	1.94
69854968--69855085	59	2.0	59	98	0	227	31	27	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69855338--69855475	27	5.1	27	83	3	145	29	10	22	37	1.87
69862011--69862043	16	2.0	17	94	5	59	36	24	3	36	1.71
69862146--69862353	53	3.9	54	81	4	231	22	25	17	35	1.95
69862159--69862345	55	3.5	53	81	7	207	21	25	18	35	1.95
69868487--69868646	29	5.5	29	81	4	162	26	31	16	26	1.96
69877859--69877945	37	2.3	36	94	5	147	26	33	19	20	1.97
69878014--69878373	49	7.4	49	95	0	569	30	29	8	31	1.87
69877994--69878360	195	1.9	197	89	1	576	29	29	8	31	1.88
69882213--69882435	119	1.9	119	92	1	376	26	29	21	23	1.99
69882213--69882435	40	5.6	40	95	1	378	26	29	21	23	1.99
69882404--69882552	40	3.7	40	79	5	149	27	28	20	23	1.99
69882230--69882549	119	2.7	119	83	6	337	27	29	20	23	1.99
69884413--69884499	37	2.3	36	94	5	147	26	33	19	20	1.97
69884568--69884878	49	6.4	49	95	0	480	30	29	8	31	1.87
69884548--69884865	146	2.2	148	89	1	478	29	30	9	31	1.88
69895127--69895152	12	2.2	12	100	0	52	76	7	0	15	0.99
69900934--69901213	47	6.0	47	90	0	425	31	11	30	26	1.92
69900961--69901036	23	3.2	25	62	24	63	28	13	34	23	1.92
69900933--69901221	141	2.0	140	94	1	506	31	11	30	27	1.91
69901102--69901177	23	3.2	25	62	24	63	28	13	34	23	1.92
69900955--69901268	141	2.2	140	89	6	449	31	12	29	26	1.93
69901376--69901592	37	5.9	37	96	0	380	23	18	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69902861--69903012	40	3.8	40	91	0	223	26	20	28	25	1.99
69907171--69907450	47	6.0	47	90	0	425	31	11	29	27	1.91
69907198--69907273	23	3.2	25	62	24	63	28	13	34	23	1.92
69907277--69907352	25	3.2	25	65	24	72	34	11	26	27	1.91
69907170--69907458	141	2.0	140	94	1	506	31	11	29	27	1.91
69907615--69907794	37	4.9	37	94	0	297	22	18	33	25	1.96
69908562--69908622	30	2.0	30	83	0	77	26	22	34	16	1.95
69912717--69912752	16	2.3	15	95	4	63	5	0	27	66	1.13
69912748--69912783	16	2.3	15	90	4	54	0	8	2	88	0.59
69913596--69913657	30	2.1	30	90	6	99	41	29	9	19	1.83
69913462--69913844	88	4.5	86	70	16	274	36	19	15	28	1.93
69913808--69914146	72	4.5	75	81	7	361	33	18	17	30	1.94
69913806--69914333	79	6.8	73	74	13	407	33	18	17	29	1.95
69914172--69914333	74	2.1	75	85	7	222	32	20	18	28	1.97
69914003--69914644	165	3.9	166	89	2	904	33	20	18	28	1.96
69914327--69914500	76	2.3	78	82	6	212	33	18	18	28	1.96
69914480--69914514	14	2.5	14	90	0	52	57	5	20	17	1.60
69914505--69915064	72	7.8	71	73	10	444	35	22	16	25	1.95
69914505--69915086	141	4.1	142	77	9	610	36	21	16	25	1.94
69922821--69922857	17	2.2	17	90	9	58	0	8	2	89	0.58
69924729--69924754	7	3.7	7	100	0	52	46	0	26	26	1.53
69924906--69925052	71	2.1	71	98	0	285	40	12	17	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69925642--69925675	17	2.0	17	88	0	50	11	5	11	70	1.32
69929324--69929431	44	2.5	44	78	0	135	34	20	15	29	1.94
69931117--69931298	40	4.7	39	85	9	230	24	21	27	26	1.99
69931118--69931298	76	2.3	80	83	10	230	24	22	27	25	2.00
69939099--69939281	39	4.7	40	86	8	243	24	21	27	25	1.99
69939099--69939314	78	2.8	78	81	14	257	25	21	27	25	2.00
69940210--69941081	436	2.0	435	97	2	1635	32	17	21	27	1.96
69946142--69947008	431	2.0	436	98	1	1699	33	11	26	29	1.91
69947967--69948148	40	4.6	39	86	8	237	24	21	27	26	1.99
69947968--69948148	39	4.6	39	85	9	219	24	21	27	25	1.99
69955941--69956143	40	5.1	40	83	7	220	24	20	28	27	1.99
69955941--69956124	79	2.3	80	83	6	214	23	20	28	27	1.99
69955974--69956147	79	2.2	79	79	11	203	25	20	26	27	1.99
69959170--69959221	24	2.2	24	92	0	86	44	9	0	46	1.36
69959491--69959517	2	13.5	2	100	0	54	51	0	0	48	1.00
69959783--69959839	24	2.4	24	100	0	114	49	12	5	33	1.63
69960210--69960263	26	2.0	26	82	3	63	48	7	20	24	1.75
69960438--69960468	16	1.9	16	100	0	62	51	3	19	25	1.62
69965095--69965361	44	6.0	44	80	7	272	31	27	16	24	1.97
69965146--69965363	45	4.9	45	83	5	264	30	27	16	24	1.97
69965095--69965353	89	2.9	89	88	2	353	30	27	16	24	1.97
69965572--69966156	301	1.9	301	97	0	1107	38	21	8	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69966583--69966610	2	14.0	2	100	0	56	50	0	0	50	1.00
69968432--69968470	20	2.0	20	89	0	60	33	17	10	38	1.84
69968671--69968803	22	5.8	23	77	10	139	32	16	23	27	1.96
69968672--69968803	45	2.9	47	78	8	148	32	16	22	28	1.96
69968645--69968828	67	2.6	71	78	14	184	32	16	21	28	1.96
69976352--69976515	47	3.5	44	80	7	157	22	28	19	29	1.98
69976352--69976609	46	5.5	46	74	9	168	22	27	18	30	1.98
69976352--69976607	140	1.8	140	83	3	345	23	27	19	30	1.98
69981317--69981386	27	2.6	27	95	2	122	30	27	14	28	1.95
69985758--69985798	11	3.7	11	96	0	73	48	0	41	9	1.36
69986670--69986727	30	1.9	30	89	0	89	27	27	13	31	1.94
69987553--69987630	20	3.9	20	78	9	88	37	15	10	37	1.81
69987554--69987649	40	2.4	40	84	8	124	39	15	9	35	1.80
69987580--69987649	20	3.5	20	74	3	70	41	14	8	35	1.76
69987829--69987916	22	4.0	22	80	4	97	35	17	21	26	1.95
69987829--69987916	44	2.0	45	86	6	126	35	17	21	26	1.95
69987829--69987939	45	2.5	44	82	5	125	35	17	20	27	1.95
69987933--69987987	26	2.2	26	90	6	87	38	20	20	21	1.94
69992723--69992990	48	5.6	48	80	5	267	27	29	16	25	1.97
69998591--69998633	22	1.9	23	85	4	61	39	16	32	11	1.84
70000654--70000721	6	11.2	6	73	14	59	16	4	2	76	1.07
70000645--70000741	5	18.8	5	72	22	60	17	4	2	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70000645--70000741	16	6.2	15	71	17	65	17	4	2	76	1.04
70003614--70003646	13	2.6	13	90	4	50	39	0	12	48	1.40
70016057--70016192	55	2.5	55	73	4	130	13	24	30	30	1.94
70020112--70020275	71	2.3	71	97	0	310	34	18	28	18	1.95
70021849--70021933	29	3.0	28	84	3	107	28	28	15	28	1.96
70025040--70025074	18	2.0	18	88	5	54	28	14	20	37	1.91
70026128--70026241	29	4.0	29	84	6	135	29	28	14	27	1.95
70026121--70026229	29	3.8	29	85	6	141	29	28	14	27	1.95
70036834--70036864	2	15.5	2	100	0	62	48	0	0	51	1.00
70041879--70041907	15	1.9	15	100	0	58	41	13	10	34	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425