Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  337  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104599145--104599203
21
2.8
21
78
12
59
69
8
0
22
1.15
104606302--104606508
53
3.8
53
78
1
180
20
25
19
35
1.96
104609248--104609304
30
1.9
30
85
7
80
26
29
28
15
1.96
104609929--104609961
15
2.2
15
94
0
57
18
18
24
39
1.92
104613646--104613702
28
2.0
28
100
0
114
19
14
17
49
1.80
104615058--104615121
25
2.5
24
78
9
65
20
6
3
70
1.23
104615058--104615121
26
2.5
26
80
7
69
20
6
3
70
1.23
104615031--104615075
6
7.7
6
85
5
56
15
0
6
77
0.96
104619178--104619210
11
2.9
12
91
8
52
69
0
0
30
0.88
104620193--104620222
14
2.1
14
93
0
51
30
6
20
43
1.77
104620439--104620485
19
2.5
19
86
3
69
55
4
0
40
1.19
104620453--104620511
31
2.0
29
83
6
73
62
1
1
33
1.15
104620810--104620849
21
1.9
21
89
0
62
55
12
10
22
1.67
104623463--104623537
29
2.5
29
82
4
87
48
13
13
25
1.79
104625227--104625288
31
2.0
31
100
0
124
38
9
6
45
1.63
104626381--104626436
19
2.9
20
80
12
64
35
3
3
57
1.34
104626466--104626511
16
2.8
17
90
6
76
28
2
0
69
1.00
104626475--104626507
8
4.1
8
100
0
66
27
0
0
72
0.85
104626476--104626534
8
6.3
9
81
12
50
22
1
3
72
1.08
104626571--104626601
2
15.5
2
100
0
62
48
0
0
51
1.00
104639508--104639715
102
2.0
103
80
2
231
33
15
14
37
1.88
104650382--104650506
62
2.0
62
100
0
250
28
18
32
20
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104653118--104653184
33
2.0
33
91
0
107
31
22
11
34
1.90
104660180--104660222
3
14.3
3
100
0
86
32
0
0
67
0.91
104662547--104662614
35
1.9
35
91
5
111
44
10
4
41
1.58
104663161--104663210
25
2.0
25
100
0
100
20
12
8
60
1.57
104675732--104676204
237
2.0
238
89
2
727
43
17
13
24
1.85
104678178--104678211
11
3.0
12
87
12
54
32
0
0
67
0.91
104678212--104678252
18
2.2
20
82
8
50
65
7
0
26
1.18
104678423--104678470
22
2.2
22
81
7
53
58
4
18
18
1.55
104680352--104680486
39
3.4
39
73
10
114
28
27
20
23
1.99
104682004--104682038
17
2.1
17
88
0
52
5
14
5
74
1.19
104682068--104682101
13
2.6
13
90
0
50
52
0
2
44
1.16
104684551--104684674
42
3.0
42
76
5
110
29
24
14
32
1.94
104684781--104684929
31
4.8
31
90
0
217
26
28
18
26
1.98
104684913--104685032
49
2.4
50
82
14
149
24
23
15
37
1.93
104687822--104687899
31
2.5
30
79
8
77
30
7
11
50
1.67
104688434--104688480
21
2.3
21
81
3
60
23
2
4
70
1.16
104692967--104693020
27
2.0
27
96
0
99
55
1
5
37
1.34
104693121--104693167
25
1.9
24
82
4
58
55
2
2
40
1.24
104695665--104695732
21
3.2
21
76
0
73
16
22
16
45
1.85
104695660--104695774
42
2.7
42
79
0
122
16
24
17
41
1.89
104695717--104695774
21
2.8
21
75
0
71
15
29
18
36
1.92
104710522--104710843
48
6.9
47
69
13
171
28
18
25
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104710485--104710657
95
1.8
96
89
1
276
27
17
26
28
1.98
104718800--104718849
22
2.3
22
80
16
59
38
6
0
56
1.24
104727662--104727707
23
2.1
23
84
8
60
43
6
2
47
1.41
104728922--104728955
17
1.9
18
88
5
52
11
8
8
70
1.34
104731851--104731906
29
1.9
29
85
7
78
48
0
0
51
1.00
104731884--104731908
12
2.1
12
100
0
50
44
0
0
56
0.99
104732384--104732429
22
2.1
22
84
8
58
67
2
0
30
1.03
104733044--104733097
23
2.3
23
96
0
99
38
0
12
48
1.42
104733053--104733095
13
3.5
13
75
18
56
37
0
13
48
1.43
104742729--104742853
28
4.4
28
71
6
90
28
16
24
30
1.96
104742728--104742855
57
2.3
56
84
1
157
29
15
25
29
1.96
104744324--104744495
93
1.8
93
96
0
317
27
30
22
20
1.98
104744316--104744491
46
3.8
46
81
10
232
28
29
21
20
1.98
104747946--104747979
17
1.9
18
88
5
52
58
2
14
23
1.50
104758226--104758344
58
2.1
58
100
0
238
31
16
15
36
1.90
104760665--104760713
21
2.3
21
79
6
55
18
24
26
30
1.98
104762860--104762904
8
5.4
8
82
10
54
37
0
0
62
0.96
104762861--104762904
13
3.4
13
78
12
54
38
0
0
61
0.96
104762859--104762906
18
2.8
17
84
9
62
37
0
0
62
0.95
104765220--104765399
51
3.6
50
84
7
220
28
14
28
28
1.95
104770073--104770156
43
2.0
43
85
4
116
44
8
9
38
1.67
104776531--104776706
42
4.0
42
76
13
160
31
26
13
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104776601--104776706
49
2.2
48
89
3
158
32
26
12
29
1.92
104776806--104776954
31
4.8
31
90
0
235
25
26
20
27
1.99
104776930--104777106
50
3.5
50
92
0
291
25
22
15
35
1.94
104779564--104779620
28
2.0
28
100
0
114
38
17
14
29
1.89
104782122--104782162
20
2.0
20
90
0
64
26
0
24
48
1.51
104782854--104782879
11
2.4
11
100
0
52
34
26
7
30
1.85
104792022--104792088
12
5.5
12
72
19
50
65
1
2
29
1.16
104792169--104792239
28
2.5
28
79
6
72
57
4
5
32
1.41
104792236--104792317
17
4.9
17
75
19
66
62
1
4
31
1.24
104794181--104794856
205
3.3
206
90
0
1012
27
21
19
31
1.97
104802972--104803001
14
2.1
14
93
0
51
46
10
6
36
1.64
104806516--104806579
27
2.4
27
75
17
71
62
1
6
29
1.29
104812049--104812087
20
2.0
20
90
10
62
51
10
0
38
1.36
104812591--104812628
19
2.0
19
90
10
60
21
10
0
68
1.19
104812608--104812635
13
2.2
13
100
0
56
21
14
0
64
1.29
104814196--104814221
2
13.0
2
100
0
52
50
0
0
50
1.00
104816660--104816725
31
2.3
29
76
18
77
28
0
7
63
1.21
104816791--104816837
23
2.1
22
85
14
62
19
4
2
74
1.09
104816854--104816882
2
14.5
2
100
0
58
48
0
0
51
1.00
104818232--104818261
15
2.0
15
100
0
60
53
26
13
6
1.64
104820690--104820747
23
2.5
23
88
0
98
20
32
25
20
1.97
104827057--104827106
27
1.9
27
88
8
77
22
22
14
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104827099--104827166
25
2.7
25
81
2
82
17
26
14
41
1.88
104828456--104828735
139
2.0
139
92
0
461
28
16
22
32
1.96
104831735--104831776
20
2.1
20
86
0
66
16
16
16
50
1.79
104831727--104831776
20
2.5
20
83
3
57
16
14
14
56
1.69
104833507--104833589
40
2.1
40
97
0
157
42
10
8
38
1.70
104833499--104833597
40
2.7
36
82
13
137
42
13
7
37
1.71
104839581--104839624
22
2.0
23
90
4
72
52
2
20
25
1.58
104856281--104856660
69
5.5
69
82
1
415
20
21
22
35
1.96
104856294--104856660
136
2.7
136
83
4
450
20
21
21
35
1.96
104856273--104856659
205
1.9
206
85
1
544
20
21
22
35
1.96
104860167--104860271
43
2.4
43
93
3
176
32
15
20
32
1.93
104864750--104864797
18
2.6
18
83
12
53
33
10
2
54
1.46
104875017--104875081
23
2.9
23
77
6
80
40
23
20
16
1.92
104875452--104875509
15
3.8
15
86
2
80
50
13
0
36
1.42
104876778--104876819
5
8.2
5
97
2
75
57
0
0
42
0.99
104876779--104876869
15
6.0
14
73
13
65
58
2
0
39
1.10
104877021--104877070
19
2.6
19
96
0
91
44
10
0
46
1.37
104878469--104878517
25
2.0
25
87
0
71
38
6
18
36
1.76
104883337--104883364
7
4.0
7
100
0
56
42
42
0
14
1.45
104884492--104884544
22
2.4
22
75
18
56
66
1
0
32
1.03
104885550--104885576
2
13.5
2
100
0
54
48
0
0
51
1.00
104886014--104886070
15
3.8
15
83
0
78
47
14
38
0
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104886007--104886086
18
4.7
18
71
21
57
45
15
40
0
1.46
104886013--104886171
33
4.8
33
82
4
153
50
14
34
0
1.43
104886076--104886174
18
5.7
18
78
7
96
55
13
31
0
1.38
104886012--104886165
51
3.1
50
85
8
181
50
14
34
0
1.44
104890493--104890763
134
2.0
135
98
0
526
36
8
11
43
1.72
104891374--104891430
17
3.2
17
70
18
53
14
49
15
21
1.80
104891374--104891476
36
2.9
36
83
0
125
15
44
13
26
1.83
104892478--104892528
25
2.0
25
96
0
93
41
23
9
25
1.85
104893047--104893095
24
2.0
24
100
0
98
26
16
12
44
1.82
104893074--104893243
46
3.7
46
86
3
227
21
23
14
41
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425