Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  187  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56715158--56715212
11
5.4
11
70
16
55
38
10
20
30
1.87
56715263--56715452
24
8.0
24
92
4
269
27
22
22
27
1.99
56715263--56715453
95
2.0
95
87
4
278
28
21
22
27
1.99
56715644--56715707
31
2.1
31
96
0
119
39
15
21
23
1.92
56723100--56723303
40
5.1
39
85
4
230
26
26
21
24
1.99
56723390--56723578
64
3.0
64
58
16
142
33
26
11
28
1.91
56723272--56723610
123
2.8
123
95
0
590
33
25
11
30
1.91
56726545--56726601
20
2.8
20
97
0
105
36
10
19
33
1.86
56726549--56726601
11
5.2
11
69
17
51
37
11
18
32
1.87
56726653--56726794
24
6.0
24
90
5
191
27
22
22
27
1.99
56726653--56726773
46
2.6
47
92
2
190
28
22
21
28
1.99
56726654--56726794
70
2.0
72
87
5
207
26
22
22
27
1.99
56726986--56727049
31
2.1
31
96
0
119
39
15
21
23
1.92
56735791--56735853
25
2.5
25
82
5
74
25
23
17
33
1.96
56737695--56738948
626
2.0
626
93
0
2134
33
17
9
39
1.81
56739394--56739600
53
3.8
54
81
1
245
19
24
18
37
1.94
56742030--56742196
46
3.8
45
79
13
186
29
29
19
20
1.97
56742087--56742152
20
3.3
20
73
12
73
27
33
19
19
1.96
56742038--56742198
85
1.9
85
92
0
268
29
29
20
21
1.98
56744541--56744629
30
3.0
30
79
11
94
58
15
15
10
1.63
56744541--56744620
15
5.4
15
79
10
85
60
13
16
10
1.59
56744552--56744629
15
5.2
15
81
9
88
57
15
15
11
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56744775--56744859
35
2.3
36
82
12
100
52
12
11
22
1.71
56744794--56744863
35
2.0
35
94
0
122
54
11
11
22
1.68
56752237--56752343
24
4.6
23
83
10
119
34
23
16
25
1.95
56752236--56752343
48
2.3
47
87
7
157
34
23
16
25
1.95
56752262--56752343
24
3.5
23
93
3
130
37
24
15
21
1.93
56775492--56775623
28
4.7
28
75
8
106
23
29
17
29
1.97
56775520--56775643
56
2.2
56
82
5
153
25
29
16
28
1.96
56779077--56779517
27
16.6
27
85
6
508
28
21
8
41
1.82
56779125--56779528
80
5.1
78
79
11
293
28
22
7
40
1.82
56780838--56780880
20
2.2
20
100
0
86
37
11
18
32
1.87
56780845--56780888
20
2.2
20
91
0
70
34
11
22
31
1.90
56780936--56781126
24
8.0
24
91
2
287
29
23
21
26
1.99
56781319--56781381
30
2.1
31
90
3
101
36
15
23
23
1.94
56784199--56784642
27
16.6
27
84
5
562
27
22
9
40
1.84
56785964--56786020
9
5.9
9
73
15
51
35
8
21
35
1.84
56785962--56786024
20
3.2
20
95
0
117
36
12
19
31
1.89
56786081--56786271
24
8.0
24
89
2
269
29
22
20
26
1.99
56793464--56793649
40
4.7
40
84
5
209
25
26
22
25
2.00
56801097--56801280
40
4.6
39
75
6
138
26
23
27
22
2.00
56801137--56801325
80
2.4
81
77
4
186
23
24
29
22
1.99
56809217--56809399
40
4.6
39
74
8
129
26
24
26
22
2.00
56810211--56810378
40
4.2
41
79
8
177
26
26
22
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56810203--56810378
80
2.2
80
78
13
195
25
26
22
25
2.00
56818628--56818663
18
2.0
19
89
10
58
2
5
22
69
1.22
56820333--56820462
58
2.3
57
94
1
224
9
10
42
38
1.70
56830300--56830472
39
4.4
39
91
0
265
24
32
19
24
1.97
56834136--56834236
28
3.5
28
86
6
114
28
13
27
29
1.95
56834165--56834236
29
2.5
28
91
6
110
29
13
27
29
1.95
56838767--56838808
20
2.1
20
82
8
50
16
26
16
40
1.90
56841038--56841070
12
2.8
12
100
0
66
0
33
27
39
1.57
56842023--56842142
43
2.8
41
75
7
123
25
25
16
31
1.97
56843592--56843663
23
3.1
23
68
20
69
43
9
19
27
1.82
56843591--56843681
46
2.0
46
95
2
166
40
9
19
29
1.84
56843591--56843657
22
3.0
22
70
20
66
41
10
20
26
1.85
56843611--56843682
24
3.1
24
68
22
71
41
9
18
30
1.82
56844268--56844324
28
2.0
29
86
3
80
33
7
8
50
1.60
56844384--56844425
22
2.1
19
86
13
57
45
0
0
54
0.99
56844384--56844422
16
2.5
15
83
8
51
46
0
0
53
1.00
56847079--56847286
40
5.2
39
83
3
211
25
25
23
25
2.00
56847079--56847284
80
2.6
81
83
4
240
25
26
23
25
2.00
56849703--56849910
40
5.2
40
85
2
258
25
21
26
26
1.99
56860103--56860163
30
2.0
30
83
0
77
31
22
8
37
1.84
56865635--56865735
28
3.5
28
86
6
114
29
13
26
29
1.94
56867298--56867333
19
1.9
19
88
5
56
44
11
0
44
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56871978--56872092
29
4.0
28
87
2
140
26
14
30
28
1.95
56878315--56878404
46
2.0
46
90
0
144
36
21
10
32
1.86
56878567--56878679
41
2.7
42
82
4
138
24
25
20
29
1.99
56878567--56878687
42
2.9
41
80
4
134
25
25
19
29
1.98
56881498--56881645
77
1.9
77
91
0
242
23
14
22
39
1.90
56881960--56882008
22
2.2
22
85
3
62
53
26
2
18
1.56
56889619--56889719
28
3.5
28
86
6
114
28
13
27
29
1.95
56889648--56889719
29
2.5
28
91
6
110
29
13
27
29
1.95
56897463--56897563
28
3.5
28
86
6
114
28
13
27
29
1.95
56897492--56897563
29
2.5
28
91
6
110
29
13
27
29
1.95
56906793--56907008
47
4.6
45
73
14
129
24
27
18
29
1.98
56907307--56907341
17
2.1
17
88
0
52
51
8
0
40
1.33
56916932--56917023
47
2.0
47
86
4
132
22
30
18
28
1.97
56916936--56917055
47
2.6
47
80
6
129
24
30
18
27
1.98
56924978--56925067
30
2.9
31
68
6
76
38
6
1
53
1.35
56925137--56925167
15
2.0
16
93
6
55
70
0
3
25
1.02
56931118--56931174
24
2.4
24
80
13
64
75
1
17
5
1.07
56935908--56935972
33
2.0
33
96
3
123
53
9
6
30
1.57
56938917--56938986
27
2.5
28
88
2
106
28
14
25
31
1.95
56938917--56938998
27
3.0
27
80
8
103
29
13
23
34
1.93
56946835--56946904
27
2.5
28
88
2
106
28
14
25
31
1.95
56946835--56946916
27
3.0
27
80
8
103
29
13
23
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56949762--56949806
20
2.2
20
84
7
65
62
6
0
31
1.21
56951962--56952023
30
2.1
30
93
0
106
53
19
8
19
1.69
56960605--56960642
19
2.0
20
85
15
53
39
23
0
36
1.55
56960863--56961035
46
3.7
46
74
10
181
30
27
18
23
1.98
56960872--56961041
93
1.8
93
90
0
277
29
27
18
24
1.98
56966510--56966695
40
4.7
40
82
6
182
27
27
21
23
1.99
56973439--56973476
19
2.0
20
85
15
53
39
23
0
36
1.55
56973694--56973868
46
3.8
46
79
7
210
28
26
21
23
1.99
56973699--56973869
93
1.8
93
93
0
297
28
27
21
22
1.99
56976690--56976733
22
2.1
21
87
8
63
29
0
25
45
1.54
56976952--56977088
40
3.3
41
79
11
129
29
15
27
27
1.96
56986458--56986501
22
2.0
22
100
0
88
22
22
18
36
1.95
56988756--56988941
40
4.7
40
93
2
297
25
29
20
23
1.99
57000044--57000230
40
4.7
40
89
2
270
25
28
21
24
1.99
57000024--57000234
80
2.7
79
88
4
309
27
27
20
24
1.99
57009749--57009841
40
2.3
40
83
3
107
29
16
29
25
1.96
57010981--57011014
17
2.0
17
88
0
50
47
5
11
35
1.65
57015635--57015735
28
3.5
28
86
6
114
29
26
13
29
1.94
57027902--57028078
39
4.7
39
87
9
267
26
21
29
22
1.99
57027903--57028047
72
2.0
73
94
1
256
26
22
29
21
1.99
57029686--57029788
29
3.6
29
95
0
179
31
14
24
30
1.95
57031414--57031561
67
2.2
69
78
10
162
32
16
28
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57034757--57034925
37
4.7
38
80
15
207
22
30
20
26
1.98
57042771--57042913
39
3.7
39
92
0
241
23
30
20
26
1.98
57042731--57042912
78
2.3
78
90
0
274
23
29
21
24
1.99
57046085--57046262
52
3.5
51
86
4
218
27
13
32
26
1.94
57047876--57047920
6
7.5
6
94
0
81
20
17
15
46
1.84
57048033--57048093
18
3.4
18
76
0
50
39
16
9
34
1.82
57048125--57048181
18
3.2
18
82
9
71
35
5
19
40
1.74
57059740--57059834
44
2.2
44
88
7
142
30
28
17
23
1.97
57060305--57060349
21
2.1
21
100
0
90
35
17
13
33
1.89
57064003--57064164
43
3.8
43
75
12
127
33
26
17
22
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425