Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  40  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10482801--10482861
31
1.9
31
83
3
77
47
8
3
40
1.49
10487998--10488048
21
2.4
22
90
9
79
37
11
0
50
1.39
10492205--10492273
35
2.0
35
82
0
84
36
18
10
34
1.85
10492427--10492460
14
2.4
14
85
0
50
32
0
17
50
1.47
10495505--10495535
2
15.5
2
100
0
62
51
0
0
48
1.00
10498889--10498920
6
4.9
7
92
7
50
25
0
0
75
0.81
10498898--10498946
19
2.5
20
80
6
57
18
10
0
71
1.13
10505149--10505271
3
41.0
3
100
0
246
66
0
0
33
0.92
10510940--10510967
2
14.0
2
100
0
56
50
0
0
50
1.00
10512555--10512603
20
2.7
18
77
22
57
51
4
2
42
1.32
10519753--10519873
46
2.6
48
88
2
165
28
16
29
25
1.97
10519748--10520010
137
1.9
138
80
8
313
26
15
28
28
1.96
10522718--10522749
15
2.1
15
100
0
64
46
21
6
25
1.74
10526323--10526415
23
3.8
23
71
16
71
15
3
34
47
1.61
10526296--10526379
28
3.0
28
87
1
123
19
2
30
47
1.62
10526586--10526666
21
3.7
23
79
11
82
14
22
27
35
1.93
10527749--10527898
46
3.1
45
74
14
138
26
16
28
29
1.97
10535255--10535341
25
3.6
24
73
11
70
16
5
5
72
1.24
10535470--10535531
3
20.3
3
96
3
115
33
0
0
66
0.92
10537133--10537196
26
2.5
26
70
14
60
20
9
3
67
1.33
10537787--10537828
20
2.0
21
81
9
50
23
14
14
47
1.80
10538116--10538150
15
2.3
15
90
9
54
88
0
8
2
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10540511--10540645
70
1.9
70
90
0
216
31
12
18
37
1.88
10541419--10541575
43
3.6
43
86
0
215
26
21
29
23
1.99
10546780--10546838
23
2.5
24
78
10
68
44
0
1
54
1.10
10552032--10552062
3
10.3
3
100
0
62
67
0
0
32
0.91
10554788--10554855
3
22.7
3
82
5
66
26
1
8
63
1.32
10557001--10557032
16
2.0
16
93
0
55
40
6
0
53
1.26
10557903--10557993
40
2.2
41
94
1
157
21
25
31
20
1.98
10561407--10561622
108
2.0
108
94
0
378
41
23
4
31
1.73
10562962--10563003
17
2.5
17
88
3
59
28
11
0
59
1.33
10564389--10564433
21
2.1
21
84
8
56
62
0
0
37
0.96
10564502--10564563
31
2.0
30
85
14
83
40
1
0
58
1.08
10564555--10564588
15
2.1
16
89
10
52
58
0
0
41
0.98
10564518--10564581
31
2.1
31
82
8
78
43
1
0
54
1.09
10564621--10564677
15
3.5
15
71
17
51
49
0
1
49
1.11
10564623--10564659
19
1.9
19
88
0
56
48
0
0
51
1.00
10565013--10565218
101
2.0
101
93
0
349
44
12
9
33
1.75
10566200--10566262
32
2.0
32
100
0
126
38
22
9
30
1.86
10566481--10566559
34
2.3
33
81
10
81
22
25
20
31
1.98
10576158--10576326
46
3.6
46
82
7
200
23
30
18
27
1.98
10576158--10576329
94
1.8
92
84
9
233
23
30
18
27
1.98
10581530--10581574
19
2.4
19
100
0
90
33
8
6
51
1.59
10581885--10581951
34
2.0
33
88
8
100
22
23
22
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10582535--10582575
20
2.1
19
86
4
55
19
39
24
17
1.92
10592397--10592531
50
2.7
50
91
0
216
28
33
22
16
1.95
10596550--10596658
50
2.2
48
79
11
112
34
6
0
58
1.24
10596585--10596676
33
2.8
33
81
8
89
32
5
1
60
1.26
10596594--10596644
19
2.4
22
84
15
63
33
7
0
58
1.27
10596617--10596713
11
8.6
11
72
22
62
34
2
1
62
1.13
10596617--10596697
33
2.4
32
85
8
99
33
2
1
62
1.16
10613822--10613998
46
3.8
46
91
0
264
21
19
27
31
1.97
10625496--10625584
46
2.0
44
86
8
126
31
14
26
26
1.95
10629710--10629757
25
1.9
25
86
0
69
33
25
16
25
1.96
10629801--10629859
20
3.0
20
92
0
100
37
11
20
30
1.89
10629910--10630004
24
4.0
24
85
10
124
28
21
24
26
1.99
10629911--10630004
47
2.0
49
85
12
133
27
21
24
26
1.99
10630196--10630357
38
4.4
38
83
12
223
38
16
22
22
1.93
10630220--10630334
31
3.5
31
78
17
133
41
13
20
23
1.88
10630196--10630334
68
2.0
69
97
1
262
39
15
21
23
1.91
10638058--10638105
25
1.9
25
86
0
69
33
25
16
25
1.96
10638149--10638207
20
3.0
20
92
0
100
37
11
20
30
1.89
10638258--10638352
24
4.0
24
85
10
124
28
21
24
26
1.99
10638259--10638352
47
2.0
49
85
12
133
27
21
24
26
1.99
10638544--10638635
38
2.5
36
92
5
148
36
17
23
21
1.94
10643311--10643370
26
2.3
26
82
8
68
38
21
20
20
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10643321--10643377
26
2.3
25
85
8
73
38
19
22
19
1.93
10643414--10643474
26
2.3
26
83
5
70
40
19
16
22
1.90
10643517--10643704
65
2.9
63
83
3
232
34
22
21
22
1.97
10644611--10644672
31
2.0
31
81
9
74
19
19
0
61
1.35
10645670--10645702
17
1.9
17
93
0
57
45
0
3
51
1.16
10649596--10649660
33
2.0
33
100
0
130
24
18
12
44
1.84
10652573--10652671
50
2.0
50
97
0
189
45
23
11
20
1.82
10656750--10656806
29
1.9
29
85
3
78
38
15
10
35
1.82
10663088--10663161
31
2.4
31
80
11
80
45
4
4
45
1.41
10664050--10664144
47
2.0
47
89
4
147
29
4
22
44
1.71
10664073--10664172
47
2.1
47
83
7
123
26
6
23
45
1.75
10664257--10664305
19
2.6
19
74
25
50
24
2
6
67
1.24
10664641--10664680
19
2.1
20
86
9
57
80
5
10
5
1.02
10666975--10667004
15
2.0
15
93
0
51
30
10
0
60
1.30
10667383--10667509
63
2.0
63
100
0
254
18
20
27
33
1.96
10667446--10667754
129
2.4
127
87
3
442
25
18
20
35
1.95
10673859--10674039
64
2.8
64
91
0
281
30
15
14
39
1.87
10674112--10674282
86
2.0
85
91
1
279
31
22
23
21
1.98
10674443--10674836
44
9.0
43
63
14
133
28
23
21
26
1.99
10674418--10675023
88
6.9
88
85
2
770
27
23
21
27
1.99
10675039--10675778
89
8.4
88
71
12
392
31
18
21
28
1.97
10675270--10675999
44
16.4
44
70
10
383
30
18
23
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10675519--10675768
133
1.9
134
85
2
351
27
19
24
28
1.99
10675522--10675814
89
3.3
89
85
1
266
29
19
23
27
1.98
10675522--10675812
133
2.2
133
82
4
320
29
19
23
27
1.98
10675039--10675999
316
3.1
315
84
5
1165
30
18
22
28
1.97
10675656--10675993
183
1.8
183
80
5
405
28
19
22
28
1.98
10677425--10677465
11
3.5
11
86
6
55
29
12
0
58
1.34
10677526--10677555
15
2.0
15
93
0
51
30
10
0
60
1.30
10677893--10678212
130
2.5
130
88
2
459
30
16
18
35
1.93
10679321--10679421
47
2.1
47
90
0
157
34
22
14
27
1.94
10679567--10679607
2
20.5
2
100
0
82
48
0
0
51
1.00
10680631--10680889
129
2.0
128
97
0
491
37
8
30
23
1.85
10683467--10683518
25
2.1
25
100
0
104
44
15
11
28
1.81
10686977--10687038
26
2.4
26
97
0
115
29
24
20
25
1.99
10695438--10695468
2
15.5
2
100
0
62
48
0
0
51
1.00
10696592--10696630
19
2.1
19
100
0
78
35
10
15
38
1.81
10697835--10697942
55
2.0
55
81
3
128
18
23
29
28
1.98
10702616--10702662
24
2.0
24
91
0
76
8
4
25
61
1.43
10704368--10704454
39
2.2
40
83
6
106
39
19
19
21
1.93
10704573--10704675
40
2.6
40
80
11
122
31
20
19
29
1.97
10704683--10704768
41
2.1
41
97
0
163
25
17
23
33
1.96
10705023--10705067
22
2.0
22
82
0
54
22
0
33
44
1.53
10705028--10705062
15
2.4
15
90
4
54
20
0
34
45
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10705368--10705400
14
2.3
15
89
5
50
18
0
45
36
1.49
10705435--10705475
7
5.7
7
82
5
55
19
0
36
43
1.51
10705435--10705476
15
2.9
14
79
6
57
21
0
35
42
1.53
10705747--10705789
19
2.3
19
88
8
61
65
6
4
23
1.37
10705784--10705820
19
1.9
19
94
0
65
72
2
5
18
1.15
10708734--10708780
23
2.0
23
100
0
94
17
8
17
57
1.63
10711968--10711995
12
2.3
12
100
0
56
46
7
0
46
1.30
10712216--10712352
43
3.2
43
85
3
179
21
18
32
27
1.97
10714333--10714420
31
2.8
31
79
6
90
40
12
18
28
1.87
10719238--10719318
10
7.9
10
74
15
76
64
2
12
20
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425