Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  378  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116212178--116212222
11
3.9
11
80
11
54
35
0
2
62
1.08
116214349--116214668
46
7.0
46
92
0
489
38
14
25
22
1.91
116229878--116229927
25
2.0
25
96
0
91
10
8
30
52
1.64
116240677--116240718
3
14.3
3
85
14
61
28
0
0
71
0.86
116240677--116240721
16
3.1
14
85
14
65
28
0
0
71
0.87
116240677--116240726
19
2.9
16
81
16
64
30
0
0
70
0.88
116241384--116241433
25
2.0
25
100
0
100
16
20
40
24
1.91
116256986--116257082
49
2.0
49
95
0
176
41
10
28
19
1.84
116259281--116259370
29
3.1
27
85
7
108
28
28
13
28
1.94
116259583--116259618
16
2.2
16
95
0
63
8
25
19
47
1.77
116268881--116268928
21
2.3
21
92
0
78
66
29
0
4
1.10
116269788--116269820
2
16.5
2
93
0
57
48
3
0
48
1.17
116271834--116271886
16
3.3
16
83
0
70
43
20
24
11
1.85
116271834--116271886
8
6.6
8
80
8
54
43
20
24
11
1.85
116272092--116272170
29
2.8
28
76
3
86
26
13
31
27
1.94
116276518--116276552
18
1.9
18
88
11
54
8
8
28
54
1.60
116284785--116284821
17
2.2
17
90
0
56
51
21
5
21
1.68
116286863--116286905
6
7.0
6
91
2
68
34
13
16
34
1.88
116286853--116286900
12
4.0
12
86
7
62
33
12
16
37
1.86
116289733--116289800
18
4.0
18
70
14
63
61
0
1
36
1.05
116293897--116293949
3
17.7
3
76
0
52
58
1
5
33
1.32
116293898--116293938
21
2.0
21
95
0
73
56
0
4
39
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116293900--116293948
21
2.3
21
86
6
64
57
2
6
34
1.35
116294050--116294117
34
2.0
34
86
8
95
75
1
5
17
1.08
116295345--116295625
44
6.2
45
70
13
168
29
21
16
32
1.95
116295310--116296150
88
9.3
88
73
11
524
29
20
16
32
1.95
116295723--116296152
44
9.8
44
76
6
359
29
20
17
33
1.95
116295693--116296063
133
2.8
133
87
2
534
29
21
17
31
1.96
116297802--116297837
18
2.0
18
100
0
72
38
16
22
22
1.93
116304137--116304201
23
2.8
23
79
9
62
43
15
6
35
1.72
116311883--116311947
23
2.8
23
79
9
62
43
15
6
35
1.72
116321467--116321524
3
19.0
3
75
3
53
58
1
5
34
1.30
116321468--116321508
21
2.0
21
95
0
73
56
0
4
39
1.21
116321470--116321518
21
2.3
21
86
6
64
57
2
6
34
1.35
116321644--116321670
12
2.2
12
100
0
54
66
0
7
25
1.17
116321623--116321657
18
1.9
18
94
0
61
71
2
2
22
1.13
116332983--116333025
21
2.1
20
91
4
68
27
11
4
55
1.55
116333111--116333177
3
21.7
3
86
6
89
28
2
1
67
1.14
116333112--116333198
27
3.1
27
84
9
104
25
3
2
68
1.16
116333258--116333304
3
15.7
3
78
8
51
27
6
0
65
1.16
116333431--116333505
24
3.2
23
81
10
89
28
5
1
65
1.22
116333440--116333515
24
3.2
22
82
12
89
30
5
0
64
1.15
116334097--116334143
24
2.0
24
82
0
58
6
6
29
57
1.49
116334919--116334964
23
2.0
23
84
12
60
45
10
6
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116334926--116334970
23
2.0
23
82
8
56
40
13
8
37
1.76
116338129--116338319
28
6.8
28
90
2
258
44
18
23
13
1.85
116338129--116338319
56
3.4
56
90
2
285
44
18
23
13
1.85
116338129--116338319
84
2.3
84
93
0
319
44
18
23
13
1.85
116339062--116339177
57
2.0
58
84
1
153
48
5
18
28
1.69
116342738--116342789
23
2.3
23
80
6
61
36
7
0
55
1.29
116344102--116344155
15
3.3
15
74
18
54
44
0
1
53
1.11
116344188--116344224
16
2.3
16
86
13
58
40
0
0
59
0.97
116344236--116344291
22
2.6
22
83
5
62
51
0
0
48
1.00
116344270--116344302
16
2.1
16
94
0
57
45
0
3
51
1.16
116356187--116356293
15
7.4
15
67
23
68
47
1
0
49
1.18
116356670--116356716
22
2.1
22
84
4
58
48
0
6
44
1.28
116364078--116364114
19
1.9
19
88
0
56
24
37
24
13
1.91
116365301--116365337
19
1.9
19
88
0
56
43
2
16
37
1.62
116374078--116374185
26
4.2
26
93
0
189
36
24
7
32
1.83
116374601--116374776
70
2.3
75
84
11
211
42
0
19
38
1.56
116374784--116374823
13
2.9
14
85
7
55
62
0
10
27
1.27
116374646--116374796
79
1.9
78
83
5
194
42
1
19
36
1.60
116375136--116375188
23
2.3
23
96
0
97
20
24
22
32
1.98
116375136--116375222
23
3.9
23
80
7
81
18
21
22
36
1.95
116377919--116378202
134
2.1
137
96
2
520
31
25
18
24
1.97
116378445--116378497
26
2.0
27
85
7
74
24
15
22
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116379976--116380109
26
5.2
26
94
3
218
36
24
5
33
1.78
116379976--116380109
50
2.6
51
94
3
225
36
24
5
33
1.78
116383857--116384142
136
2.1
137
96
0
520
32
25
18
24
1.97
116385918--116386053
26
5.2
26
96
0
245
36
25
5
32
1.78
116390707--116390746
13
2.9
14
85
7
55
0
10
12
77
0.99
116396254--116396279
3
8.7
3
100
0
52
69
0
0
30
0.89
116402112--116402167
16
3.5
16
87
0
85
26
28
7
37
1.83
116437161--116437195
6
5.8
6
100
0
70
0
14
0
85
0.59
116437163--116437206
18
2.4
18
88
7
63
0
15
4
79
0.89
116441412--116441455
9
4.8
9
77
5
52
34
2
40
22
1.67
116442747--116442977
124
1.9
124
90
0
372
30
16
11
42
1.82
116444391--116444445
16
3.4
16
70
5
56
21
5
5
67
1.32
116444382--116444453
33
2.2
33
97
0
135
20
9
5
63
1.44
116444385--116444438
17
3.2
17
68
5
56
22
5
7
64
1.40
116449649--116449713
30
2.2
30
88
5
96
61
12
3
23
1.45
116451596--116451652
28
2.0
29
86
3
80
29
21
17
31
1.96
116451663--116451762
29
3.5
29
79
1
103
42
22
12
24
1.87
116451751--116451853
29
3.6
29
77
9
111
34
22
17
25
1.95
116452539--116452816
46
6.0
46
89
2
380
20
22
14
42
1.89
116454941--116454987
3
16.3
3
79
16
55
68
0
2
29
1.02
116454947--116454987
11
3.7
11
87
6
57
68
0
2
29
1.03
116454940--116454987
14
3.4
14
80
13
62
68
0
2
29
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116454941--116454987
17
2.8
16
83
9
58
68
0
2
29
1.02
116456380--116456493
56
2.0
56
100
0
228
35
21
7
35
1.81
116457917--116458178
46
5.7
46
84
4
316
21
22
15
41
1.90
116457922--116458193
91
3.0
91
86
4
370
21
22
14
41
1.89
116460303--116460351
3
17.3
3
76
19
52
69
0
2
28
1.00
116460309--116460347
11
3.5
11
92
0
69
69
0
2
28
1.02
116460310--116460351
19
2.2
19
87
8
59
71
0
2
26
0.98
116460321--116460396
20
3.7
21
77
10
68
59
6
1
32
1.32
116466750--116466774
13
1.9
13
100
0
50
56
20
0
24
1.43
116468108--116468161
14
3.6
14
76
14
54
46
5
0
48
1.25
116474812--116474836
13
1.9
13
100
0
50
56
20
0
24
1.43
116478360--116478425
21
3.2
21
84
2
80
25
24
37
12
1.90
116479620--116479994
48
7.8
48
85
3
337
23
27
20
28
1.99
116479620--116479995
144
2.6
144
79
3
373
23
27
20
28
1.99
116479851--116479930
23
3.4
23
63
19
56
25
23
20
31
1.98
116485116--116485162
21
2.2
21
100
0
94
34
17
27
21
1.95
116498175--116498226
27
2.0
26
84
3
68
34
21
26
17
1.95
116498488--116498533
19
2.4
19
96
0
83
6
34
26
32
1.82
116506942--116506966
2
12.5
2
100
0
50
52
48
0
0
1.00
116506966--116506994
2
14.5
2
100
0
58
51
0
0
48
1.00
116508384--116508505
42
2.8
42
75
13
113
30
25
17
27
1.97
116508373--116508535
43
3.8
44
73
8
147
30
24
17
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116508857--116508881
12
2.1
12
100
0
50
48
8
0
44
1.32
116509646--116509672
13
2.1
13
100
0
54
48
22
0
29
1.51
116519146--116519206
30
2.0
30
83
0
77
31
22
8
37
1.84
116523594--116523654
30
2.0
30
83
0
77
31
22
8
37
1.84
116526201--116526264
31
2.1
31
90
0
101
25
23
15
35
1.94
116526456--116526620
23
7.0
24
92
4
257
29
22
20
27
1.99
116526456--116526620
47
3.5
48
90
6
257
29
22
20
27
1.99
116526679--116526755
9
7.9
9
72
16
64
35
20
7
36
1.82
116526675--116526757
20
4.2
20
93
0
148
32
19
10
37
1.86
116526686--116526757
11
7.1
11
70
17
66
33
19
9
37
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425