genome.fa.s8.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  158  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48069107--48069293	6	30.3	6	74	15	159	48	14	18	18	1.81
48069107--48069293	25	7.6	24	79	11	159	48	14	18	18	1.81
48069130--48069249	37	3.2	37	85	4	145	49	15	17	17	1.80
48069139--48069293	62	2.5	62	93	0	61	47	15	18	18	1.82
48069139--48069271	19	6.8	19	75	19	130	48	15	18	17	1.82
48069739--48069963	27	8.3	27	78	5	206	26	19	16	37	1.93
48069743--48069963	81	2.7	81	88	2	320	26	19	16	38	1.92
48070009--48070232	27	8.3	26	81	7	112	31	9	19	39	1.83
48069997--48070285	54	5.4	54	85	2	312	31	9	20	39	1.84
48069992--48070277	81	3.5	80	82	4	315	31	9	19	38	1.85
48070053--48070285	27	8.6	27	88	0	340	30	9	20	39	1.84
48077343--48077507	40	4.2	39	83	5	188	24	21	27	26	2.00
48081514--48081677	43	3.8	43	80	10	183	23	17	25	33	1.96
48089070--48089117	25	1.9	25	86	0	69	33	25	16	25	1.96
48089161--48089219	20	3.0	20	97	0	109	37	10	20	32	1.86
48089165--48089219	11	5.4	11	70	16	55	38	10	20	30	1.87
48089270--48089434	24	7.0	24	91	6	248	29	22	22	26	1.99
48089626--48089688	30	2.1	31	93	3	110	39	14	22	23	1.91
48093932--48094065	29	4.7	29	83	3	94	26	32	16	25	1.96
48093991--48094088	29	3.4	29	95	0	178	26	28	14	30	1.95
48100245--48100291	18	2.6	18	93	0	85	17	17	34	31	1.92
48104831--48105018	27	7.0	26	80	4	169	37	20	10	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48104840--48105019	54	3.4	53	80	2	207	37	20	10	31	1.86
48104998--48105194	27	7.4	27	88	1	263	35	19	20	24	1.96
48105335--48105412	27	2.9	27	83	5	79	24	23	17	34	1.96
48105362--48105412	26	1.9	27	88	4	77	25	23	17	33	1.96
48105565--48105654	33	2.7	33	82	0	99	26	20	25	27	1.99
48106258--48106285	13	2.2	13	100	0	56	46	7	14	32	1.71
48107217--48107259	21	2.0	21	100	0	86	30	13	27	27	1.95
48107240--48107344	42	2.4	43	84	3	140	26	18	24	30	1.98
48107241--48107353	43	2.7	41	77	16	122	25	18	24	30	1.98
48119115--48119174	27	2.3	27	79	2	68	41	20	20	18	1.90
48119331--48119642	27	11.6	27	80	4	330	24	22	19	33	1.97
48119331--48119640	107	2.9	108	84	1	401	24	22	19	33	1.97
48124589--48124764	46	3.8	46	81	10	232	20	21	29	28	1.98
48124585--48124756	93	1.8	93	96	0	317	20	22	30	27	1.98
48127704--48127774	15	4.8	15	77	10	83	11	18	12	57	1.64
48127695--48127774	29	2.7	30	79	11	92	11	17	15	56	1.67
48130136--48130262	46	2.8	46	89	7	197	19	22	29	28	1.98
48133200--48133279	15	5.4	15	77	7	83	10	18	13	57	1.64
48133191--48133278	30	3.0	30	80	11	92	10	18	15	55	1.68
48135657--48135785	46	2.8	46	96	0	231	19	22	29	28	1.98
48139273--48139307	15	2.3	15	95	0	61	20	45	0	34	1.51
48142317--48142534	40	5.5	40	85	4	264	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48160528--48160678	43	3.4	45	73	10	107	31	15	22	30	1.95
48161340--48161384	23	1.9	24	82	13	58	28	4	33	33	1.77
48166103--48166316	46	4.6	46	79	11	206	28	19	29	22	1.98
48166197--48166368	46	3.7	46	86	11	187	27	19	29	22	1.98
48168578--48168620	16	2.7	16	96	0	77	13	25	20	39	1.90
48170183--48170265	40	2.1	40	93	4	141	27	26	19	26	1.99
48189466--48189637	46	3.7	45	77	13	188	22	20	27	29	1.98
48191198--48191298	28	3.5	29	86	6	125	29	27	13	28	1.95
48199277--48199377	28	3.5	29	86	6	125	29	27	13	28	1.95
48203697--48203814	29	4.1	30	77	12	115	27	27	14	30	1.95
48203698--48203810	58	2.0	57	82	5	138	25	29	15	30	1.95
48206439--48206497	30	2.0	30	89	0	91	28	25	5	40	1.77
48209633--48209796	71	2.3	71	100	0	328	18	28	17	35	1.94
48209633--48209830	71	2.8	69	91	3	247	21	28	16	33	1.95
48210823--48210861	21	1.9	20	89	5	60	15	41	28	15	1.87
48228751--48228914	71	2.3	71	100	0	328	18	28	17	35	1.94
48228751--48228948	71	2.8	70	91	3	258	20	28	17	33	1.95
48230746--48230830	43	2.0	43	81	4	100	25	1	34	38	1.64
48230780--48230830	14	3.6	14	81	2	66	29	0	31	39	1.57
48230924--48231024	14	7.1	14	69	11	71	25	0	24	48	1.57
48231605--48231645	14	2.9	14	92	3	55	75	2	0	21	0.92
48231605--48231645	22	1.9	21	90	5	64	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48231605--48231637	7	4.7	7	100	0	66	75	0	0	24	0.80
48235103--48235312	40	5.2	40	88	2	305	21	28	24	25	1.99
48243238--48243447	40	5.2	40	88	2	305	21	28	24	25	1.99
48245689--48245815	40	3.2	41	84	11	133	23	29	25	22	1.99
48245714--48245819	40	2.7	37	90	10	158	23	28	24	23	2.00
48253489--48253640	38	3.9	38	91	5	225	23	28	23	24	2.00
48253489--48253640	79	2.0	76	90	6	243	23	28	23	24	2.00
48262560--48262608	17	2.8	18	74	22	50	24	18	22	34	1.96
48263425--48263591	40	4.2	40	79	6	169	25	21	27	25	1.99
48265303--48265488	40	4.7	40	88	5	227	25	21	26	25	1.99
48265337--48265521	80	2.3	79	80	11	200	28	21	25	24	1.99
48268024--48268059	2	17.5	2	94	5	63	50	2	0	47	1.15
48283303--48283357	25	2.2	25	87	6	76	50	5	25	18	1.67
48283329--48283441	41	2.8	40	87	4	163	51	7	20	20	1.72
48286300--48286333	16	2.1	16	88	0	50	61	0	5	32	1.20
48286354--48286405	23	2.3	23	82	0	68	36	5	11	46	1.64
48287697--48287741	22	2.0	22	100	0	90	22	13	13	51	1.75
48293433--48293531	39	2.5	39	76	0	99	42	19	7	31	1.78
48295362--48295556	49	3.9	49	84	2	255	25	20	25	28	1.99
48295364--48295556	100	1.9	100	93	0	332	25	20	24	29	1.99
48300104--48300288	40	4.6	40	82	2	228	26	23	25	24	2.00
48308244--48308427	40	4.6	40	80	3	210	26	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48308244--48308466	79	2.8	80	81	6	240	26	21	26	26	2.00
48310593--48310629	15	2.3	17	86	9	51	67	5	0	27	1.12
48318386--48318472	44	2.0	43	90	2	138	49	13	6	29	1.68
48323110--48323196	44	2.0	43	93	2	147	49	14	6	28	1.70
48323730--48323754	13	1.9	13	100	0	50	0	16	0	84	0.63
48327409--48327588	48	3.9	48	74	12	176	28	22	20	29	1.98
48327893--48327954	31	2.0	31	96	0	115	40	11	6	41	1.66
48333702--48333742	21	2.0	21	85	9	57	21	14	0	63	1.30
48336682--48336751	25	2.8	25	91	0	104	30	22	21	25	1.99
48336956--48337117	27	6.0	27	86	0	216	24	21	19	34	1.96
48336957--48337118	54	3.0	54	91	0	243	24	21	19	34	1.96
48337145--48337558	27	15.3	26	80	6	283	29	9	21	39	1.85
48337164--48337538	54	6.9	54	82	3	373	30	9	21	38	1.85
48337164--48337538	81	4.6	82	78	7	390	30	9	21	38	1.85
48341422--48341524	29	3.6	29	78	2	100	20	17	33	28	1.95
48349274--48349376	29	3.6	29	78	2	100	20	17	33	28	1.95
48356663--48356731	28	2.5	28	95	2	122	18	10	27	43	1.82
48359168--48359780	49	12.1	49	83	11	736	33	9	27	30	1.88
48359168--48359780	98	6.1	98	84	9	829	33	9	27	30	1.88
48359318--48359355	19	2.0	19	100	0	76	31	10	26	31	1.90
48359269--48359404	68	2.0	68	98	0	263	33	9	26	30	1.88
48359220--48359453	117	2.0	117	100	0	468	33	9	26	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48359166--48359502	166	2.0	166	97	0	629	33	9	26	30	1.88
48359337--48359780	147	3.0	147	97	0	852	33	9	27	29	1.89
48359853--48359939	37	2.3	36	92	5	138	21	19	32	26	1.97
48364090--48364210	30	4.0	30	86	4	154	33	10	25	30	1.90
48367679--48367748	25	2.8	25	93	0	113	24	22	25	27	2.00
48367951--48368197	27	9.1	27	90	0	377	24	21	19	34	1.96
48368185--48368336	27	5.7	26	82	6	162	28	7	21	42	1.80
48368185--48368350	54	3.1	54	81	5	185	28	7	22	40	1.82
48368156--48368336	81	2.2	80	80	6	213	28	9	20	40	1.84
48368185--48368533	27	13.3	26	77	9	160	31	8	21	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425