genome.fa.s8.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  135  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40713573--40713791	80	2.8	81	80	10	247	25	28	21	25	1.99
40717151--40717187	16	2.3	16	90	0	56	62	8	8	21	1.49
40723815--40723915	50	2.0	50	90	1	159	32	2	8	55	1.46
40723822--40723927	50	2.1	49	84	1	131	33	4	8	52	1.53
40723958--40723990	17	1.9	17	100	0	66	33	12	6	48	1.65
40725726--40725910	40	4.7	40	80	11	204	25	27	22	24	2.00
40725726--40725909	79	2.3	81	83	9	227	25	27	22	25	2.00
40729197--40729252	16	3.4	17	76	16	55	71	0	17	10	1.14
40729276--40729341	18	3.7	16	77	18	60	68	1	19	10	1.27
40731021--40731121	50	2.0	49	94	1	175	29	4	9	55	1.54
40731164--40731196	17	1.9	17	100	0	66	33	12	6	48	1.65
40732644--40732671	2	14.0	2	100	0	56	0	0	50	50	1.00
40733078--40733124	23	2.1	21	84	7	58	51	2	6	40	1.39
40742495--40742560	34	2.0	33	84	3	87	39	22	10	27	1.87
40751386--40751527	49	3.0	47	93	4	257	33	8	28	30	1.87
40751519--40751718	48	4.2	47	87	5	276	36	6	26	31	1.82
40751519--40751718	96	2.1	96	92	0	328	36	6	26	31	1.82
40751758--40751885	37	3.4	37	97	1	229	22	18	33	25	1.97
40753721--40754001	40	7.0	40	94	0	445	23	22	29	25	1.99
40761572--40761623	20	2.6	20	87	0	77	44	26	13	15	1.84
40761545--40761623	40	2.0	40	84	0	104	48	22	13	15	1.80
40765691--40765873	79	2.3	81	85	7	241	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40765670--40765873	40	5.1	40	83	8	247	25	27	22	24	1.99
40773664--40773846	79	2.3	81	85	7	241	25	27	22	24	2.00
40773643--40773846	40	5.1	40	83	8	247	25	27	22	24	1.99
40777412--40777440	14	2.1	14	100	0	58	41	0	6	51	1.28
40788719--40788837	29	4.2	30	74	8	106	26	30	15	27	1.96
40788906--40788942	19	2.0	18	89	5	56	18	37	16	27	1.92
40789047--40789098	8	6.6	8	80	2	52	9	23	19	48	1.78
40790374--40790528	42	3.7	41	78	6	168	30	24	12	32	1.92
40793611--40793731	43	2.9	42	72	2	116	33	23	12	29	1.92
40801756--40801948	94	2.1	94	98	0	377	37	4	7	51	1.49
40801996--40802035	2	20.0	2	100	0	80	50	0	0	50	1.00
40809198--40809404	40	5.2	40	82	7	242	25	21	27	26	1.99
40809198--40809384	79	2.3	81	83	8	247	24	21	27	26	1.99
40809202--40809419	79	2.7	80	78	9	241	25	21	27	25	1.99
40813547--40813597	25	2.0	25	100	0	102	29	7	27	35	1.85
40814519--40814583	34	1.9	34	93	3	114	27	23	20	29	1.98
40817184--40817311	37	3.4	37	97	1	229	25	33	18	22	1.97
40817351--40817598	48	5.2	48	91	0	397	31	25	6	36	1.81
40817590--40817731	49	3.0	47	93	4	257	30	28	8	33	1.87
40821501--40821772	40	6.8	40	94	0	445	25	29	21	24	1.99
40823600--40823727	37	3.4	37	93	4	204	25	33	18	22	1.97
40831273--40831432	29	5.5	29	82	4	180	25	31	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40833975--40834144	43	4.0	43	73	9	132	28	14	24	33	1.94
40836568--40836769	40	5.1	39	88	2	260	23	20	27	27	1.99
40844678--40844841	40	4.1	40	79	6	179	24	20	28	27	1.99
40844678--40844841	80	2.0	80	82	6	199	24	20	28	27	1.99
40869177--40869369	39	4.9	39	90	0	251	23	31	21	23	1.98
40869207--40869369	39	4.2	39	93	0	263	24	31	20	23	1.98
40876928--40877081	39	3.9	39	86	0	191	24	31	21	22	1.98
40876958--40877081	39	3.2	39	90	1	194	25	32	20	22	1.98
40880807--40880876	32	2.2	32	94	2	124	37	31	7	24	1.82
40885143--40885260	48	2.5	48	86	5	161	25	27	16	30	1.97
40894839--40895065	46	4.8	47	78	10	198	23	30	18	27	1.97
40894839--40895065	94	2.4	92	83	8	260	23	30	18	27	1.97
40900097--40900254	27	5.9	27	86	0	192	41	18	15	24	1.89
40902632--40902780	80	1.9	80	81	2	183	22	30	24	22	1.99
40902673--40902780	40	2.7	38	85	8	128	21	29	25	23	1.99
40910021--40910629	47	13.0	47	88	0	894	31	11	29	26	1.92
40910021--40910629	94	6.5	94	93	0	1029	31	11	29	26	1.92
40910330--40910405	23	3.2	25	62	24	63	28	13	34	23	1.92
40910435--40910505	22	3.1	22	66	18	54	29	14	30	25	1.94
40910491--40910569	25	3.3	25	65	22	69	30	10	30	29	1.90
40910518--40910593	23	3.2	25	62	24	63	28	13	34	23	1.92
40910792--40910974	37	4.9	37	93	0	303	22	19	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40913296--40913439	54	2.7	54	94	2	245	17	25	23	33	1.96
40913299--40913457	27	5.9	27	82	11	184	18	25	22	33	1.97
40913299--40913457	81	2.0	80	84	8	207	18	25	22	33	1.97
40920390--40920532	54	2.6	54	92	2	234	17	26	22	33	1.96
40920392--40920550	27	5.9	27	81	11	184	18	26	21	33	1.97
40920392--40920550	81	2.0	80	84	8	207	18	26	21	33	1.97
40923818--40923887	21	3.3	21	95	0	122	12	21	44	21	1.85
40926631--40926852	40	5.6	40	90	1	331	23	22	26	27	1.99
40931662--40931892	39	6.0	39	93	2	394	21	25	29	23	1.99
40931662--40931900	77	3.1	77	92	1	390	23	24	28	23	2.00
40938461--40938509	11	4.3	11	75	10	53	36	2	2	59	1.21
40938429--40938508	27	3.0	27	70	18	76	40	1	3	55	1.26
40938456--40938511	24	2.3	24	81	3	67	39	1	1	57	1.20
40940633--40940977	46	8.0	40	83	15	324	36	15	25	22	1.94
40940672--40941017	46	7.7	46	89	6	451	37	15	25	21	1.93
40940623--40941017	84	4.5	86	87	7	496	37	15	25	21	1.93
40940756--40941017	91	2.9	92	87	2	366	38	15	25	20	1.91
40940637--40941004	137	2.8	129	86	7	457	37	15	25	21	1.93
40941842--40941983	71	2.0	71	100	0	284	39	12	12	35	1.82
40943971--40944019	22	2.3	21	82	10	55	57	8	2	32	1.40
40946568--40946595	5	5.6	5	100	0	56	17	0	0	82	0.68
40947127--40947171	23	2.0	23	86	0	63	31	4	0	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40948869--40948911	17	2.5	17	80	3	50	30	2	4	62	1.28
40949075--40949120	23	2.0	23	95	0	83	26	6	52	15	1.67
40956167--40956215	11	4.3	11	75	10	53	36	2	2	59	1.21
40956135--40956214	27	3.0	27	70	18	76	40	1	3	55	1.26
40956162--40956217	24	2.3	24	81	3	67	39	1	1	57	1.20
40958378--40958722	46	7.7	46	89	6	451	37	15	24	21	1.93
40958329--40958722	84	4.5	86	87	7	487	37	15	24	21	1.93
40958461--40958722	91	2.9	92	88	2	368	39	15	24	20	1.91
40959547--40959688	71	2.0	71	100	0	284	39	12	12	35	1.82
40961665--40961713	22	2.3	21	82	10	55	57	8	2	32	1.40
40964261--40964288	5	5.6	5	100	0	56	17	0	0	82	0.68
40964818--40964863	23	2.0	23	86	4	65	32	4	0	63	1.14
40971353--40971556	40	5.1	40	85	4	214	26	22	27	24	1.99
40971353--40971570	80	2.7	80	80	3	244	27	22	27	23	1.99
40979489--40979692	40	5.1	40	85	4	214	26	22	27	24	1.99
40979489--40979692	80	2.5	80	80	1	239	26	22	27	24	1.99
40987268--40987404	40	3.4	40	84	0	175	31	13	19	35	1.90
40987370--40987521	78	1.9	78	93	2	261	33	14	20	31	1.93
40990133--40990245	6	18.3	6	67	21	56	50	14	15	20	1.78
40990177--40990234	19	3.4	19	65	30	58	46	17	17	18	1.84
40990144--40990245	31	3.3	31	93	2	161	50	13	14	20	1.76
40990382--40990457	28	2.8	27	80	4	80	36	19	22	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40990616--40990680	22	3.0	22	80	8	78	33	23	23	20	1.97
40990936--40990966	16	1.9	16	93	0	53	35	16	19	29	1.93
40991107--40991561	27	17.0	27	87	1	583	24	21	19	35	1.96
40991554--40991738	81	2.3	81	79	1	201	33	8	20	37	1.83
40991608--40991807	54	3.7	54	86	2	251	30	9	21	39	1.85
40991592--40991807	81	2.7	81	83	1	254	30	9	21	39	1.84
40991607--40991807	27	7.4	27	87	1	226	29	9	21	38	1.85
40993087--40993259	46	3.7	47	81	9	187	26	19	30	23	1.98
40996709--40996753	22	2.0	22	83	8	56	17	28	22	31	1.97
41000055--41000094	17	2.4	17	82	0	53	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425