genome.fa.s8.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  301  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93615978--93616024	3	15.7	3	100	0	94	31	0	0	68	0.90
93616255--93616280	2	13.0	2	100	0	52	50	0	0	50	1.00
93616388--93616432	21	2.1	22	91	4	74	26	0	26	46	1.53
93616545--93616597	21	2.5	21	78	6	54	30	3	18	47	1.67
93616642--93616673	7	4.6	7	100	0	64	15	0	59	25	1.36
93617242--93617522	155	1.8	155	84	4	388	27	22	19	30	1.98
93617488--93617571	40	2.1	40	84	4	107	22	28	15	33	1.95
93617744--93617875	46	2.7	49	87	4	180	34	22	14	28	1.93
93621339--93621580	40	6.1	40	83	5	280	24	23	27	24	2.00
93621339--93621554	79	2.7	79	83	7	278	24	23	27	24	2.00
93621339--93621580	119	2.0	118	85	5	328	24	23	27	24	2.00
93624170--93624300	59	2.3	58	94	2	228	38	14	22	24	1.92
93624140--93624300	88	1.8	88	89	2	252	36	14	23	25	1.93
93624170--93624300	29	4.5	29	96	2	228	38	14	22	24	1.92
93632019--93632150	59	2.3	58	94	1	228	38	14	22	24	1.91
93631989--93632150	88	1.8	89	89	1	254	37	14	23	25	1.92
93632019--93632150	29	4.5	29	96	1	228	38	14	22	24	1.91
93632943--93632977	16	2.1	18	89	10	56	57	0	14	28	1.38
93634707--93634837	30	4.5	30	86	8	171	28	25	13	32	1.94
93634706--93634837	58	2.3	58	85	4	176	28	26	13	31	1.94
93640635--93640681	21	2.2	22	84	3	60	59	4	4	31	1.36
93640659--93640722	19	3.2	19	74	14	58	56	1	0	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93642722--93642781	29	2.1	29	100	0	120	28	16	16	38	1.91
93653450--93653627	49	3.6	49	75	11	164	30	27	17	24	1.97
93655974--93656021	25	1.9	25	86	0	69	33	25	16	25	1.96
93656065--93656123	20	3.0	20	92	0	100	37	11	20	30	1.89
93656174--93656268	24	4.0	24	85	10	124	28	21	24	26	1.99
93656175--93656268	47	2.0	49	85	12	133	27	21	24	26	1.99
93656478--93656593	31	3.5	31	80	15	142	41	14	20	23	1.89
93656463--93656616	38	4.2	38	83	13	207	38	16	22	22	1.93
93656463--93656593	69	1.9	69	96	0	244	39	16	21	22	1.92
93660162--93660195	15	2.2	16	94	5	61	61	17	8	11	1.54
93660133--93660190	30	2.0	29	83	10	73	60	12	17	10	1.58
93662851--93663276	81	5.3	81	82	5	423	28	22	9	38	1.86
93662882--93663247	27	13.6	27	86	3	443	28	22	9	40	1.84
93664483--93664530	25	1.9	25	86	0	69	33	25	16	25	1.96
93664573--93664631	19	3.0	20	90	5	102	33	11	20	33	1.89
93664682--93664824	24	6.0	24	91	4	209	28	22	22	26	1.99
93664682--93664824	47	3.0	47	90	5	207	28	22	22	26	1.99
93664682--93664825	71	2.0	72	89	4	220	29	22	22	26	1.99
93667854--93668218	27	13.6	27	87	2	439	27	21	9	41	1.83
93669457--93669504	25	1.9	25	86	0	69	33	25	16	25	1.96
93669548--93669606	20	3.0	20	92	0	100	35	11	20	32	1.89
93669657--93669799	24	6.0	24	91	4	209	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93669657--93669799	47	3.0	47	90	5	207	28	22	22	26	1.99
93669657--93669800	71	2.0	72	89	4	220	29	22	22	26	1.99
93671885--93672060	50	3.5	49	81	3	172	29	25	18	26	1.98
93677487--93677552	33	2.0	33	96	0	123	30	16	15	37	1.90
93680313--93680388	40	1.9	40	88	0	116	17	13	32	36	1.88
93689723--93689830	26	4.2	26	93	0	189	32	7	24	36	1.83
93691427--93691531	27	3.9	27	86	9	135	19	24	21	34	1.96
93696039--93696225	71	2.7	68	93	5	281	18	28	18	34	1.95
93696062--93696225	71	2.3	71	100	0	328	18	28	17	35	1.94
93696062--93696259	71	2.8	70	92	3	276	20	28	17	33	1.95
93705242--93705491	40	6.3	41	82	5	239	24	22	28	25	1.99
93718181--93718218	20	2.0	20	94	5	69	60	5	7	26	1.46
93719124--93719151	14	2.0	14	100	0	56	42	0	14	42	1.45
93720134--93720165	10	3.2	10	95	0	55	50	6	0	43	1.27
93720130--93720160	14	2.2	14	94	0	53	51	9	0	38	1.35
93721328--93721353	11	2.4	11	100	0	52	23	0	7	69	1.14
93735786--93735894	27	4.1	27	85	4	132	42	17	8	32	1.79
93735786--93735894	53	2.0	54	85	5	150	42	17	8	32	1.79
93735806--93735905	26	3.8	27	84	7	125	42	16	9	33	1.79
93735356--93736462	556	2.0	557	95	0	1975	27	18	24	29	1.98
93736363--93736521	27	6.0	27	78	8	119	37	19	12	30	1.89
93736482--93736643	27	6.0	27	86	1	209	35	20	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93736484--93736625	53	2.6	54	91	2	223	36	20	19	23	1.95
93736846--93736940	25	3.8	25	95	0	163	26	26	23	24	2.00
93745328--93745365	17	2.1	19	85	14	53	50	5	2	42	1.39
93751146--93751189	13	3.4	13	81	6	54	65	2	2	29	1.16
93751183--93751214	14	2.3	14	94	0	55	81	3	12	3	0.93
93751247--93751277	14	2.3	14	94	5	55	74	3	22	0	0.96
93754746--93754782	18	2.1	18	90	5	58	54	0	0	45	1.00
93755268--93755296	13	2.1	14	93	6	51	48	0	0	51	1.00
93755361--93755419	30	2.0	30	86	6	84	49	11	6	32	1.66
93762909--93762955	17	2.8	17	86	0	67	61	6	0	31	1.21
93770829--93770863	19	1.9	19	88	11	56	22	14	0	62	1.31
93773485--93773520	18	2.1	17	89	5	54	61	8	2	27	1.39
93774218--93774257	16	2.5	16	83	0	53	22	5	25	47	1.71
93780701--93780744	9	4.9	9	88	0	61	36	6	40	15	1.74
93780710--93780748	18	2.2	18	95	0	69	35	5	41	17	1.72
93780953--93781033	22	3.7	21	72	6	56	7	9	23	59	1.55
93781601--93781660	26	2.3	25	80	11	66	65	1	6	26	1.27
93783987--93784150	71	2.3	71	100	0	328	18	28	17	35	1.94
93783987--93784184	71	2.8	70	91	3	258	20	28	17	33	1.95
93786187--93786234	24	2.0	24	100	0	96	33	0	16	50	1.46
93787976--93788023	21	2.3	21	85	0	60	29	37	16	16	1.91
93788203--93788323	60	2.0	59	81	12	140	27	14	11	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93802796--93802845	26	2.0	26	88	7	77	34	0	4	62	1.14
93805184--93805404	27	8.2	26	87	6	289	35	23	24	16	1.95
93805184--93805404	54	4.1	54	93	1	363	35	23	24	16	1.95
93806023--93806156	26	5.2	26	95	0	241	36	26	5	31	1.80
93811413--93811578	27	6.1	27	81	11	189	37	22	23	16	1.93
93811413--93811578	54	3.1	54	91	1	253	37	22	23	16	1.93
93812244--93812351	26	4.2	26	96	0	198	36	26	7	29	1.84
93815199--93815275	27	2.8	25	79	18	73	64	2	2	29	1.20
93815257--93815314	20	2.8	21	85	15	77	65	1	5	27	1.23
93815289--93815352	24	2.5	25	85	7	76	62	1	3	32	1.20
93816895--93817024	44	3.0	44	87	0	179	28	24	15	31	1.95
93817148--93817374	44	5.1	44	79	7	237	27	25	15	31	1.96
93817186--93817374	88	2.1	88	90	1	290	30	24	14	30	1.94
93816915--93817635	350	2.1	350	92	0	1183	28	23	17	30	1.97
93817498--93817635	44	3.1	44	82	5	143	26	24	15	33	1.95
93829454--93829482	2	14.5	2	100	0	58	51	0	0	48	1.00
93829679--93829736	21	2.9	19	75	9	55	62	1	5	31	1.27
93829900--93829976	27	2.8	25	79	18	73	64	2	2	29	1.20
93829961--93830015	20	2.7	21	81	13	71	63	1	7	27	1.31
93829990--93830053	24	2.5	25	85	7	76	62	1	3	32	1.20
93831476--93832665	396	3.0	396	98	0	2299	38	11	21	28	1.89
93837317--93837483	40	4.2	40	79	6	160	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93840439--93840470	14	2.4	13	90	10	55	62	12	6	18	1.50
93841164--93841309	53	2.9	48	80	11	168	31	26	15	27	1.95
93842669--93842699	10	3.1	10	100	0	62	48	0	29	22	1.51
93846763--93846820	28	2.1	28	100	0	116	46	24	12	17	1.81
93857690--93857731	20	2.2	19	87	12	59	42	7	11	38	1.69
93857715--93857823	28	3.9	28	80	4	121	56	5	15	22	1.59
93862381--93862698	29	11.0	28	79	8	237	39	15	24	20	1.91
93862356--93862697	87	3.9	87	77	5	305	39	14	24	21	1.91
93865478--93865546	28	2.5	28	92	2	113	20	10	26	43	1.83
93866167--93866228	27	2.3	27	91	0	97	27	16	16	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425