genome.fa.s8.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  154  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46842107--46842190	42	2.0	42	85	0	114	27	25	19	28	1.98
46852016--46852145	40	3.2	40	81	4	165	23	28	25	22	1.99
46855245--46855274	2	15.0	2	100	0	60	50	0	0	50	1.00
46857643--46857707	29	2.2	29	100	0	130	73	9	3	13	1.19
46857676--46857714	19	2.1	19	85	0	51	74	7	5	12	1.20
46860673--46860698	13	2.0	13	100	0	52	38	7	15	38	1.76
46866212--46866300	43	2.1	42	95	2	160	33	7	0	58	1.27
46871761--46871909	80	1.9	80	81	2	183	22	30	24	22	1.99
46871802--46871909	40	2.7	38	85	8	128	21	29	25	23	1.99
46879874--46880022	80	1.9	80	81	2	183	22	30	24	22	1.99
46879915--46880022	40	2.7	38	85	8	128	21	29	25	23	1.99
46885737--46886119	40	9.6	40	90	4	448	25	25	20	27	1.99
46885737--46886119	79	4.8	80	92	5	593	25	25	20	27	1.99
46890822--46891003	40	4.5	40	85	2	195	25	25	22	26	2.00
46893251--46893639	40	9.8	40	90	0	600	25	28	22	23	1.99
46895049--46895300	47	5.3	47	94	1	387	28	30	8	32	1.87
46895099--46895177	25	3.3	25	66	16	76	31	29	5	34	1.79
46895049--46895300	49	5.3	49	93	2	390	28	30	8	32	1.87
46899431--46899549	43	2.8	43	80	7	154	29	22	15	32	1.94
46900117--46900182	32	2.1	32	100	0	132	50	9	9	31	1.65
46900126--46900177	16	3.2	16	70	20	54	50	9	5	34	1.59
46903603--46903713	27	4.1	27	88	3	145	37	21	23	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46904951--46905005	28	2.0	28	82	6	69	60	0	34	5	1.20
46905142--46905218	24	3.2	24	94	0	127	20	42	3	32	1.70
46907134--46907167	17	1.9	18	88	5	52	44	17	5	32	1.73
46914378--46914461	27	3.1	27	84	5	91	38	21	22	17	1.94
46915890--46915951	24	2.6	24	97	0	115	20	41	4	32	1.74
46922183--46922220	20	1.9	20	88	0	58	34	2	10	52	1.50
46928213--46928380	40	4.2	40	80	1	167	23	27	23	25	2.00
46928229--46928378	80	1.9	80	83	5	196	22	27	24	26	2.00
46933374--46933411	20	1.9	20	88	0	58	34	2	10	52	1.50
46936540--46936587	25	1.9	25	86	0	69	33	25	16	25	1.96
46936635--46936690	11	5.5	11	71	16	57	35	12	19	32	1.89
46936624--46936690	20	3.3	20	93	0	116	34	11	20	32	1.90
46936740--46936858	24	5.0	24	89	5	179	29	20	21	28	1.98
46936741--46936837	47	2.1	47	96	0	176	29	19	20	29	1.97
46937051--46937114	31	2.1	31	87	0	92	35	14	23	26	1.93
46944384--46944431	25	1.9	25	86	0	69	33	25	16	25	1.96
46944479--46944534	11	5.5	11	71	16	57	35	12	19	32	1.89
46944468--46944534	20	3.3	20	93	0	116	34	11	20	32	1.90
46944584--46944725	24	6.0	24	92	5	227	28	21	21	28	1.99
46944584--46944725	47	3.0	48	90	7	227	28	21	21	28	1.99
46969540--46969671	29	4.6	29	84	1	140	25	17	32	25	1.97
46977405--46977536	29	4.6	29	84	1	140	25	17	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46979089--46979124	18	1.9	19	88	5	56	63	0	25	11	1.27
46980463--46980594	29	4.5	29	97	1	237	37	14	23	24	1.92
46980463--46980594	59	2.3	58	95	1	237	37	14	23	24	1.92
46987018--46987119	29	3.5	28	76	7	89	27	34	17	20	1.95
46993690--46993777	29	3.1	28	71	12	88	29	27	15	27	1.96
46993690--46993803	58	2.0	58	92	0	192	30	24	18	26	1.98
46993703--46993804	29	3.5	29	72	10	100	30	24	19	25	1.98
46993961--46994335	43	8.7	43	92	1	590	31	32	24	12	1.92
46994311--46994351	16	2.6	16	96	0	73	26	26	34	12	1.92
46995768--46995840	35	2.1	35	97	0	137	38	19	6	35	1.78
46998646--46998832	27	6.9	27	87	3	205	38	19	19	21	1.94
46998731--46998849	54	2.2	54	84	3	150	38	16	21	23	1.93
47002186--47002245	30	2.0	30	96	0	111	33	25	16	25	1.96
47004196--47004427	27	8.5	27	79	5	216	38	23	17	20	1.93
47004196--47004417	82	2.7	81	83	4	250	39	22	18	19	1.93
47004356--47004446	27	3.4	27	87	0	119	39	16	17	26	1.91
47004845--47004909	34	1.9	34	90	0	103	27	20	24	27	1.99
47006337--47006453	27	4.3	27	85	4	155	28	23	8	40	1.84
47006337--47006453	54	2.2	54	92	0	189	28	23	8	40	1.84
47006485--47006637	27	5.7	27	87	2	191	39	20	9	30	1.85
47006452--47006635	54	3.4	53	79	5	145	38	19	11	30	1.88
47006485--47006634	81	1.9	81	85	2	212	40	20	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47006485--47006745	27	9.6	27	78	7	156	39	19	9	31	1.84
47006505--47006717	54	3.9	54	79	7	173	40	17	9	31	1.83
47006485--47006661	81	2.2	81	82	2	203	40	19	9	29	1.84
47007649--47007726	25	3.2	24	85	7	104	28	20	24	26	1.99
47007938--47008020	31	2.7	30	92	3	132	28	15	25	30	1.96
47010419--47010565	37	4.0	37	79	7	154	29	30	16	23	1.96
47010727--47010912	47	4.0	47	90	0	282	25	28	12	33	1.93
47010763--47010838	23	3.2	25	63	24	63	22	34	14	28	1.93
47010812--47010887	22	3.3	22	68	22	66	26	28	11	32	1.92
47014659--47015049	40	9.8	39	90	3	584	25	29	21	23	1.99
47016315--47016451	37	3.7	37	91	0	220	26	32	18	23	1.97
47016621--47016853	47	5.0	47	91	0	367	25	27	13	33	1.93
47016657--47016732	23	3.2	25	63	24	63	22	32	14	30	1.94
47016706--47016828	22	5.3	22	62	21	63	26	26	13	33	1.94
47016613--47016874	141	1.9	138	81	9	318	29	26	11	32	1.92
47020235--47020351	27	4.3	27	89	4	164	28	22	8	41	1.83
47020350--47020505	54	2.9	54	82	5	156	41	19	10	29	1.84
47020384--47020508	27	4.6	27	86	3	180	41	21	7	29	1.80
47020384--47020534	54	2.8	53	82	6	144	41	20	7	30	1.79
47020384--47020532	81	1.8	81	85	5	212	42	20	7	30	1.79
47020499--47020592	27	3.4	27	75	8	91	41	15	7	35	1.76
47020463--47020561	27	3.6	27	76	10	76	45	18	4	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47021524--47021592	24	2.8	24	84	2	84	26	26	20	27	1.99
47021549--47021605	24	2.4	24	88	5	80	29	21	21	28	1.98
47021812--47021894	31	2.7	31	88	3	125	30	14	25	30	1.95
47025524--47025965	27	16.4	27	87	1	582	30	22	6	40	1.79
47025997--47026093	27	3.6	27	82	10	94	45	22	5	26	1.73
47027076--47027153	25	3.2	25	77	13	74	26	23	23	26	2.00
47027283--47027374	42	2.2	42	88	0	130	31	11	21	34	1.90
47027398--47027537	31	4.5	31	95	0	235	30	17	25	27	1.97
47040293--47040351	31	1.9	31	86	6	84	16	23	3	55	1.56
47040820--47041047	114	2.0	114	99	0	447	24	31	21	23	1.98
47042075--47042157	42	2.0	43	90	2	132	36	27	13	22	1.92
47051307--47051468	39	4.1	39	91	0	261	22	20	33	23	1.97
47051307--47051499	39	4.9	39	88	0	251	22	21	32	22	1.98
47057471--47057632	39	4.2	39	91	2	263	22	20	32	24	1.98
47057471--47057663	39	4.9	39	89	1	253	22	21	32	23	1.98
47070159--47070322	71	2.3	71	100	0	328	18	28	17	35	1.94
47070159--47070356	71	2.8	70	91	3	258	20	28	17	33	1.95
47077732--47077895	71	2.3	71	100	0	328	18	28	17	35	1.94
47077732--47077929	71	2.8	70	91	3	258	20	28	17	33	1.95
47089372--47089409	20	1.9	20	88	0	58	34	2	10	52	1.50
47091034--47091102	28	2.5	28	90	2	113	43	26	10	20	1.83
47097377--47097414	20	1.9	20	88	0	58	34	2	10	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47099037--47099105	27	2.6	27	93	4	113	46	26	8	18	1.78
47101666--47101697	11	2.9	11	95	0	55	28	18	18	34	1.95
47109079--47109192	43	2.7	43	81	5	151	28	21	15	34	1.94
47109764--47109829	32	2.1	32	100	0	132	50	9	9	31	1.65
47109773--47109824	16	3.2	16	70	20	54	50	9	5	34	1.59
47113250--47113360	27	4.1	27	88	3	145	38	22	22	16	1.92
47114595--47114649	28	2.0	28	82	6	69	60	0	34	5	1.20
47121123--47121233	27	4.1	27	84	3	102	38	19	23	18	1.93
47121651--47121687	8	4.6	8	86	0	56	2	21	21	54	1.58
47122672--47122764	24	3.9	24	92	0	159	23	39	5	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425