Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  343  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106201719--106201810
42
2.2
42
86
3
123
27
10
21
40
1.87
106204506--106204595
27
3.3
28
81
6
105
38
18
10
32
1.84
106204506--106204624
54
2.2
54
82
5
143
38
21
10
30
1.86
106204530--106204605
27
2.8
26
76
7
80
38
19
10
31
1.86
106204608--106205082
27
17.6
27
86
0
536
28
22
7
41
1.81
106204980--106205231
27
9.3
27
78
7
116
36
18
8
36
1.82
106204601--106205081
81
5.9
81
90
2
698
27
23
7
41
1.82
106204954--106205121
81
2.1
81
78
4
178
29
19
10
40
1.84
106205290--106205354
27
2.4
27
82
5
78
35
18
24
21
1.96
106206505--106206552
25
1.9
25
91
0
78
35
25
14
25
1.94
106206591--106206647
9
5.9
9
73
15
51
35
8
21
35
1.84
106206589--106206659
20
3.5
20
94
0
124
35
11
21
32
1.89
106206600--106206654
11
5.4
11
70
16
55
36
12
20
30
1.90
106206706--106206870
23
7.1
23
89
4
260
27
22
21
27
1.99
106206706--106206872
47
3.6
47
92
2
275
28
22
22
27
1.99
106207012--106207103
42
2.2
42
86
3
123
27
10
21
40
1.87
106211280--106211386
55
1.9
55
84
3
144
21
25
32
20
1.97
106213842--106213949
30
3.7
30
81
9
134
25
25
11
37
1.89
106213839--106213952
60
1.9
58
91
7
185
24
26
11
37
1.89
106214483--106214515
15
2.2
15
94
0
57
24
24
18
33
1.97
106216876--106217022
30
5.0
30
74
13
135
24
23
12
38
1.90
106222591--106222626
8
4.5
8
100
0
72
25
25
0
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106224237--106224300
31
2.1
31
96
0
119
23
21
15
39
1.92
106224492--106224609
24
5.0
24
87
7
161
27
22
22
28
1.99
106224492--106224609
46
2.5
48
86
8
161
27
22
22
28
1.99
106224660--106224719
20
3.0
20
92
0
102
31
21
11
35
1.90
106224762--106224809
25
1.9
25
86
0
69
25
16
25
33
1.96
106231663--106231780
31
3.5
35
89
9
135
22
23
16
37
1.94
106231686--106231780
31
3.1
31
98
0
181
23
22
15
38
1.92
106231972--106232114
24
6.0
24
91
4
209
26
22
22
28
1.99
106231972--106232113
47
3.0
48
90
5
207
26
22
22
28
1.99
106231971--106232114
71
2.0
72
89
4
220
26
22
22
29
1.99
106232165--106232224
20
3.0
20
92
0
102
31
21
11
35
1.90
106232267--106232314
25
1.9
25
86
0
69
25
16
25
33
1.96
106240250--106240282
17
1.9
17
88
11
50
30
0
0
69
0.88
106240568--106240654
19
4.7
19
92
5
151
37
11
14
35
1.83
106240587--106240643
17
3.5
15
84
15
53
38
10
15
35
1.82
106240568--106240658
36
2.5
37
87
8
141
39
10
15
34
1.82
106248130--106248244
38
2.8
42
73
17
132
33
19
20
26
1.97
106248329--106249183
175
4.9
175
86
5
1002
32
19
20
27
1.97
106248940--106249253
87
3.6
87
84
3
434
31
19
21
27
1.97
106248940--106249299
87
4.1
87
82
4
431
31
19
21
26
1.97
106248553--106249270
175
4.1
174
85
6
608
32
19
20
27
1.96
106249849--106249886
17
2.5
15
80
19
51
39
10
15
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106249849--106249927
36
2.1
38
88
9
117
37
8
16
36
1.80
106249849--106249927
19
4.2
19
87
9
117
37
8
16
36
1.80
106253665--106253822
79
2.0
79
97
0
298
20
15
22
41
1.90
106253684--106253858
79
2.2
79
84
4
201
25
13
21
39
1.90
106256595--106256619
4
6.2
4
100
0
50
76
0
0
24
0.80
106258330--106258381
24
2.2
24
82
6
61
42
1
0
55
1.10
106259272--106259332
33
1.9
31
83
12
79
36
8
11
44
1.71
106262989--106263068
38
2.2
36
85
12
103
33
0
23
42
1.55
106263010--106263082
20
3.8
20
71
18
73
31
0
24
43
1.54
106263620--106264001
126
3.0
126
87
1
541
36
18
17
27
1.94
106271193--106271224
7
4.6
7
100
0
64
56
15
0
28
1.40
106271247--106271302
18
3.5
18
66
31
54
32
1
3
62
1.23
106271250--106271310
29
2.1
30
96
3
115
32
3
3
60
1.29
106272238--106272366
48
2.7
47
82
10
163
54
6
9
29
1.58
106272508--106272539
11
2.9
11
95
0
55
43
0
18
37
1.51
106272966--106273016
2
25.5
2
100
0
102
49
0
0
50
1.00
106273221--106273272
26
2.0
26
84
0
68
42
9
9
38
1.70
106287889--106288060
40
4.3
40
82
5
215
27
26
21
24
1.99
106287889--106288065
80
2.2
80
85
8
245
26
27
22
24
2.00
106295232--106295356
40
3.2
40
80
10
148
28
26
22
23
1.99
106295247--106295368
40
3.0
40
80
4
156
27
27
22
22
1.99
106296984--106297143
46
3.4
46
75
17
143
25
28
17
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106299589--106299691
43
2.4
43
82
4
129
32
25
19
23
1.98
106300480--106300554
37
2.0
37
94
0
132
18
24
10
46
1.80
106303444--106303663
47
4.7
47
79
8
216
22
31
19
26
1.98
106303452--106303666
94
2.3
93
86
3
279
23
31
18
26
1.97
106315465--106315510
20
2.4
19
88
3
65
15
6
2
76
1.09
106315465--106315538
5
14.4
5
72
20
55
20
5
1
72
1.11
106318433--106318475
17
2.6
16
85
10
59
51
2
2
44
1.27
106320847--106321109
47
5.6
48
74
10
172
23
27
19
30
1.98
106320894--106321112
46
4.7
46
74
10
160
22
27
20
29
1.98
106339987--106340016
16
1.9
15
93
6
51
66
3
10
20
1.35
106341598--106341636
21
1.9
21
94
5
71
20
30
38
10
1.86
106342768--106342989
46
4.7
46
82
7
236
23
31
18
27
1.97
106342768--106342987
94
2.3
92
85
6
282
23
30
18
27
1.97
106344677--106344707
16
1.9
16
93
0
53
48
0
9
41
1.36
106348723--106348764
19
2.2
19
91
0
66
40
4
14
40
1.67
106352164--106352252
35
2.6
35
82
7
101
24
12
30
32
1.92
106352292--106352568
68
4.1
67
83
2
322
38
16
20
25
1.92
106352306--106352576
136
2.0
136
86
2
375
38
16
20
24
1.92
106358148--106358204
30
1.9
30
92
0
96
33
15
19
31
1.93
106358451--106358511
29
2.1
29
93
0
104
34
13
13
39
1.83
106360314--106360353
9
4.4
9
83
0
53
35
0
5
60
1.19
106372924--106373094
2
85.5
2
100
0
342
0
0
49
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106373847--106373888
22
1.9
22
95
0
75
54
0
42
2
1.13
106374157--106374598
113
3.9
113
91
4
660
31
1
15
51
1.51
106374167--106374598
227
1.9
221
88
6
611
31
1
15
51
1.50
106374663--106374694
15
2.1
16
94
5
57
37
0
6
56
1.25
106380717--106380797
42
1.9
42
89
0
126
19
19
37
23
1.95
106384173--106384210
17
2.2
17
86
9
51
13
10
18
57
1.63
106385834--106385913
27
3.0
28
72
7
76
57
3
3
35
1.34
106385961--106386006
21
2.2
21
85
14
60
58
4
6
30
1.43
106385969--106386018
21
2.5
18
79
20
55
62
2
4
32
1.25
106386002--106386063
16
3.9
16
76
2
54
58
1
3
37
1.24
106387768--106387799
16
2.0
16
100
0
64
25
6
25
43
1.77
106396301--106396508
85
2.4
85
77
10
201
37
15
8
38
1.78
106396636--106396683
19
2.5
20
83
13
64
58
2
2
37
1.22
106396654--106396775
9
12.9
9
72
14
59
61
3
2
32
1.25
106396649--106396689
19
2.2
19
86
8
57
60
0
0
39
0.96
106396678--106396735
19
3.1
19
80
7
57
70
6
3
18
1.24
106396722--106396876
40
3.9
39
72
10
118
60
1
5
32
1.28
106397063--106397134
19
3.7
19
77
3
81
23
4
4
68
1.25
106397140--106397202
27
2.3
28
83
8
85
38
3
1
57
1.24
106397153--106397192
19
2.0
20
85
4
55
37
0
2
60
1.11
106402762--106402808
21
2.4
19
82
10
58
46
23
2
27
1.63
106405727--106405772
23
2.1
21
84
8
56
10
13
2
73
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106406115--106406164
15
3.4
14
78
15
57
60
0
2
38
1.09
106408808--106408916
52
2.1
52
83
6
132
24
20
11
44
1.84
106408900--106408997
50
1.9
52
89
4
155
25
26
10
37
1.88
106413348--106413393
23
2.0
23
95
0
83
26
6
4
63
1.38
106413468--106413502
11
3.0
11
88
12
52
42
0
0
57
0.99
106418349--106418380
2
16.0
2
100
0
64
0
50
0
50
1.00
106418380--106418408
2
14.5
2
100
0
58
48
0
0
51
1.00
106422521--106422583
29
2.2
29
83
8
76
34
1
0
63
1.04
106422552--106422591
11
3.6
11
89
0
53
35
0
2
62
1.09
106427942--106427978
14
2.6
14
100
0
74
51
18
5
24
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425